GATCI whole exome somatic variants (MuTect)
Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK/MuTect, to generate somatic variant calls. Somatic variant calls are in VCF format. Details for the mutect call can be found in the vcf header.
- 28/01/2020
- DAC: EGAC00001002164
- Archive: European Genome-phenome Archive (EGA)
Data Access Agreement for the Nichols Group
Data will be available to qualified investigators upon request.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002234 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF00002012515 | vcf | 173.1 kB | Report |
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| EGAF00002012516 | vcf | 164.1 kB | Report |
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| EGAF00002012517 | vcf | 2.6 MB | Report |
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| EGAF00002012518 | vcf | 187.0 kB | Report |
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| EGAF00002012519 | vcf | 186.2 kB | Report |
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| EGAF00002012520 | vcf | 2.6 MB | Report |
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| EGAF00002012521 | vcf | 2.6 MB | Report |
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| EGAF00002012522 | vcf | 166.4 kB | Report |
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| EGAF00002012523 | vcf | 163.6 kB | Report |
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| EGAF00002012524 | vcf | 2.6 MB | Report |
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| EGAF00002012525 | vcf | 2.6 MB | Report |
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| EGAF00002012526 | vcf | 2.5 MB | Report |
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| EGAF00002012527 | vcf | 2.4 MB | Report |
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| EGAF00002012528 | vcf | 160.5 kB | Report |
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| EGAF00002012529 | vcf | 183.8 kB | Report |
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| EGAF00002012530 | vcf | 174.2 kB | Report |
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| EGAF00002012531 | vcf | 336.9 kB | Report |
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| EGAF00002012532 | vcf | 2.2 MB | Report |
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| EGAF00002012533 | vcf | 2.7 MB | Report |
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| EGAF00002012534 | vcf | 933.1 kB | Report |
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| EGAF00002012535 | vcf | 1.9 MB | Report |
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| EGAF00002012536 | vcf | 2.3 MB | Report |
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| EGAF00002012537 | vcf | 2.4 MB | Report |
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| EGAF00002012538 | vcf | 2.9 MB | Report |
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| EGAF00002012539 | vcf | 2.5 MB | Report |
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| EGAF00002012540 | vcf | 2.4 MB | Report |
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| EGAF00002012541 | vcf | 2.4 MB | Report |
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| EGAF00002012542 | vcf | 1.5 MB | Report |
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| EGAF00002012543 | vcf | 1.7 MB | Report |
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| EGAF00002012544 | vcf | 2.5 MB | Report |
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| EGAF00002012545 | vcf | 2.8 MB | Report |
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| EGAF00002012546 | vcf | 2.6 MB | Report |
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| EGAF00002012547 | vcf | 3.0 MB | Report |
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| EGAF00002012548 | vcf | 2.9 MB | Report |
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| EGAF00002012549 | vcf | 255.6 kB | Report |
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| EGAF00002012550 | vcf | 3.3 MB | Report |
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| EGAF00002012551 | vcf | 3.3 MB | Report |
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| EGAF00002012552 | vcf | 4.3 MB | Report |
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| EGAF00002012553 | vcf | 2.7 MB | Report |
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| EGAF00002012554 | vcf | 207.4 kB | Report |
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| EGAF00002012555 | vcf | 201.9 kB | Report |
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| EGAF00002012556 | vcf | 2.7 MB | Report |
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| EGAF00002012557 | vcf | 241.9 kB | Report |
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| EGAF00002012558 | vcf | 209.3 kB | Report |
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| EGAF00002012559 | vcf | 2.8 MB | Report |
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| EGAF00002012560 | vcf | 204.9 kB | Report |
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| EGAF00002012561 | vcf | 196.1 kB | Report |
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| EGAF00002012562 | vcf | 2.2 MB | Report |
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| EGAF00002012563 | vcf | 212.6 kB | Report |
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| EGAF00002012564 | vcf | 2.4 MB | Report |
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| EGAF00002012565 | vcf | 2.3 MB | Report |
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| EGAF00002012566 | vcf | 2.9 MB | Report |
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| EGAF00002012567 | vcf | 222.8 kB | Report |
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| EGAF00002012568 | vcf | 168.6 kB | Report |
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| EGAF00002012580 | vcf | 172.5 kB | Report |
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| EGAF00002012581 | vcf | 3.2 MB | Report |
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| EGAF00002012582 | vcf | 2.8 MB | Report |
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| EGAF00002012583 | vcf | 2.9 MB | Report |
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| EGAF00002012584 | vcf | 187.8 kB | Report |
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| EGAF00002012585 | vcf | 181.8 kB | Report |
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| EGAF00002012586 | vcf | 183.3 kB | Report |
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| EGAF00002012587 | vcf | 2.8 MB | Report |
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| EGAF00002012588 | vcf | 2.7 MB | Report |
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| EGAF00002012589 | vcf | 203.2 kB | Report |
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| EGAF00002012590 | vcf | 221.3 kB | Report |
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| EGAF00002012591 | vcf | 192.9 kB | Report |
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| EGAF00002012592 | vcf | 2.8 MB | Report |
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| EGAF00002012593 | vcf | 194.0 kB | Report |
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| EGAF00002012594 | vcf | 186.7 kB | Report |
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| EGAF00002012595 | vcf | 202.4 kB | Report |
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| EGAF00002012611 | vcf | 201.4 kB | Report |
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| EGAF00002012613 | vcf | 2.2 MB | Report |
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| EGAF00002012614 | vcf | 2.8 MB | Report |
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| EGAF00002012615 | vcf | 2.6 MB | Report |
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| EGAF00002012616 | vcf | 2.5 MB | Report |
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| EGAF00002012617 | vcf | 2.7 MB | Report |
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| EGAF00002012618 | vcf | 2.8 MB | Report |
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| EGAF00002012619 | vcf | 185.1 kB | Report |
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| EGAF00002012620 | vcf | 184.0 kB | Report |
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| EGAF00002012621 | vcf | 256.2 kB | Report |
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| EGAF00002012622 | vcf | 180.5 kB | Report |
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| EGAF00002012623 | vcf | 182.7 kB | Report |
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| EGAF00002012624 | vcf | 2.4 MB | Report |
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| EGAF00002012625 | vcf | 2.2 MB | Report |
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| EGAF00002012626 | vcf | 2.9 MB | Report |
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| EGAF00002012631 | vcf | 2.9 MB | Report |
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| EGAF00002012632 | vcf | 2.7 MB | Report |
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| EGAF00002012633 | vcf | 2.1 MB | Report |
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| EGAF00002012634 | vcf | 2.9 MB | Report |
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| EGAF00002012635 | vcf | 231.8 kB | Report |
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| EGAF00002012636 | vcf | 2.7 MB | Report |
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| EGAF00002012637 | vcf | 169.7 kB | Report |
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| EGAF00002012638 | vcf | 157.1 kB | Report |
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| EGAF00002012639 | vcf | 2.7 MB | Report |
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| EGAF00002012640 | vcf | 165.9 kB | Report |
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| EGAF00002012641 | vcf | 167.5 kB | Report |
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| EGAF00002012642 | vcf | 240.4 kB | Report |
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| EGAF00002012643 | vcf | 183.0 kB | Report |
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| EGAF00002012644 | vcf | 164.2 kB | Report |
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| EGAF00002012645 | vcf | 157.4 kB | Report |
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| EGAF00002012646 | vcf | 161.0 kB | Report |
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| EGAF00002012661 | vcf | 179.2 kB | Report |
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| EGAF00002012662 | vcf | 160.9 kB | Report |
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| EGAF00002012663 | vcf | 210.9 kB | Report |
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| EGAF00002012664 | vcf | 221.5 kB | Report |
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| EGAF00002012665 | vcf | 156.8 kB | Report |
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| EGAF00002012666 | vcf | 166.6 kB | Report |
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| EGAF00002012667 | vcf | 156.6 kB | Report |
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| EGAF00002012668 | vcf | 189.2 kB | Report |
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| EGAF00002012669 | vcf | 208.9 kB | Report |
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| EGAF00002012670 | vcf | 203.1 kB | Report |
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| EGAF00002012671 | vcf | 322.2 kB | Report |
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| EGAF00002012672 | vcf | 555.3 kB | Report |
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| EGAF00002012673 | vcf | 264.3 kB | Report |
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| EGAF00002012674 | vcf | 247.1 kB | Report |
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| EGAF00002012675 | vcf | 298.4 kB | Report |
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| EGAF00002012676 | vcf | 238.6 kB | Report |
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| EGAF00002012692 | vcf | 284.9 kB |
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| EGAF00002012693 | vcf | 165.1 kB | Report |
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| EGAF00002012694 | vcf | 178.5 kB | Report |
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| EGAF00002012695 | vcf | 183.3 kB | Report |
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| EGAF00002012696 | vcf | 171.7 kB | Report |
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| EGAF00002012697 | vcf | 177.0 kB | Report |
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| EGAF00002012698 | vcf | 178.4 kB | Report |
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| EGAF00002012699 | vcf | 168.7 kB | Report |
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| EGAF00002012700 | vcf | 186.1 kB | Report |
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| EGAF00002012701 | vcf | 195.0 kB | Report |
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| EGAF00002012702 | vcf | 261.0 kB | Report |
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| EGAF00002012703 | vcf | 173.0 kB | Report |
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| EGAF00002012704 | vcf | 187.1 kB | Report |
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| EGAF00002012705 | vcf | 187.0 kB | Report |
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| EGAF00002012706 | vcf | 172.3 kB | Report |
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| EGAF00002012707 | vcf | 621.8 kB | Report |
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| EGAF00002012723 | vcf | 170.5 kB | Report |
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| EGAF00002012724 | vcf | 164.9 kB | Report |
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| EGAF00002012725 | vcf | 168.3 kB | Report |
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| EGAF00002012726 | vcf | 191.7 kB |
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| EGAF00002012727 | vcf | 184.9 kB | Report |
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| EGAF00002012728 | vcf | 168.5 kB | Report |
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| EGAF00002012729 | vcf | 164.4 kB | Report |
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| EGAF00002012730 | vcf | 2.7 MB | Report |
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| EGAF00002012731 | vcf | 2.7 MB | Report |
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| EGAF00002012732 | vcf | 2.6 MB | Report |
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| EGAF00002012733 | vcf | 2.7 MB | Report |
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| EGAF00002012734 | vcf | 2.2 MB | Report |
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| EGAF00002012735 | vcf | 2.2 MB | Report |
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| EGAF00002012736 | vcf | 182.3 kB | Report |
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| EGAF00002012737 | vcf | 167.4 kB | Report |
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| EGAF00002012738 | vcf | 2.1 MB | Report |
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| EGAF00002012753 | vcf | 3.5 MB | Report |
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| EGAF00002012754 | vcf | 2.4 MB | Report |
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| EGAF00002012755 | vcf | 2.5 MB | Report |
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| EGAF00002012756 | vcf | 12.5 MB | Report |
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| EGAF00002012757 | vcf | 2.4 MB | Report |
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| EGAF00002012758 | vcf | 2.7 MB | Report |
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| EGAF00002012759 | vcf | 2.5 MB | Report |
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| EGAF00002012760 | vcf | 2.4 MB | Report |
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| EGAF00002012761 | vcf | 2.6 MB | Report |
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| EGAF00002012762 | vcf | 176.3 kB | Report |
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| EGAF00002012763 | vcf | 161.4 kB | Report |
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| EGAF00002012764 | vcf | 166.5 kB | Report |
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| EGAF00002012765 | vcf | 196.5 kB |
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| EGAF00002012766 | vcf | 162.5 kB | Report |
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| EGAF00002012767 | vcf | 2.3 MB | Report |
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| EGAF00002012768 | vcf | 171.5 kB | Report |
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| EGAF00003290613 | vcf.gz | 32.2 kB | Report |
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| 166 Files (214.4 MB) | ||||