About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

NICHE - DNA-seq of MMR proficient and MMR deficient early stage colon cancers

The dataset includes 174 FASTQ files from paired-end WXS sequencing on Illumina HiSeq2500 for 39 patients.

Request Access

Data Access Policy for the NICHE DNA and RNA sequencing datasets

To request access to the NICHE DNA/RNA sequencing datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Abstract of the Project in which the Data will be used (research proposal and research questions) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt, review and approval of your Data Access Request by the Data Access Committee and the IRB, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). Please note the Data Access Committee reserves the right to withhold granting access to requested datasets.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004160 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00003447656 fastq.gz 3.3 GB Report
EGAF00003447657 fastq.gz 3.5 GB Report
EGAF00003447658 fastq.gz 3.3 GB Report
EGAF00003447659 fastq.gz 3.5 GB Report
EGAF00003447660 fastq.gz 3.4 GB Report
EGAF00003447661 fastq.gz 3.5 GB Report
EGAF00003491096 fastq.gz 3.1 GB Report
EGAF00003491097 fastq.gz 3.2 GB Report
EGAF00003491098 fastq.gz 3.3 GB Report
EGAF00003491099 fastq.gz 2.9 GB Report
EGAF00003491100 fastq.gz 3.2 GB Report
EGAF00003491101 fastq.gz 3.3 GB Report
EGAF00003491102 fastq.gz 3.2 GB Report
EGAF00003491103 fastq.gz 3.3 GB Report
EGAF00003491104 fastq.gz 3.3 GB Report
EGAF00003491105 fastq.gz 3.4 GB Report
EGAF00003491106 fastq.gz 3.7 GB Report
EGAF00003491107 fastq.gz 3.9 GB Report
EGAF00003491108 fastq.gz 3.3 GB Report
EGAF00003491109 fastq.gz 3.4 GB Report
EGAF00003491110 fastq.gz 3.5 GB Report
EGAF00003491111 fastq.gz 3.7 GB Report
EGAF00003491112 fastq.gz 3.3 GB Report
EGAF00003491113 fastq.gz 3.4 GB Report
EGAF00003491114 fastq.gz 3.2 GB Report
EGAF00003491115 fastq.gz 3.3 GB Report
EGAF00003491116 fastq.gz 3.2 GB Report
EGAF00003491117 fastq.gz 3.4 GB Report
EGAF00003491118 fastq.gz 3.4 GB Report
EGAF00003491119 fastq.gz 3.5 GB Report
EGAF00003491120 fastq.gz 3.1 GB Report
EGAF00003491121 fastq.gz 3.3 GB Report
EGAF00003491122 fastq.gz 3.2 GB Report
EGAF00003491123 fastq.gz 3.4 GB Report
EGAF00003491124 fastq.gz 3.2 GB Report
EGAF00003491125 fastq.gz 2.6 GB Report
EGAF00003491126 fastq.gz 2.9 GB Report
EGAF00003491127 fastq.gz 3.1 GB Report
EGAF00003491128 fastq.gz 3.4 GB Report
EGAF00003491129 fastq.gz 3.5 GB Report
EGAF00003491130 fastq.gz 3.3 GB Report
EGAF00003491131 fastq.gz 2.9 GB Report
EGAF00003491132 fastq.gz 2.9 GB Report
EGAF00003491133 fastq.gz 3.0 GB Report
EGAF00003491134 fastq.gz 3.4 GB Report
EGAF00003491135 fastq.gz 3.6 GB Report
EGAF00003491136 fastq.gz 3.1 GB Report
EGAF00003491137 fastq.gz 2.5 GB Report
EGAF00003491138 fastq.gz 3.0 GB Report
EGAF00003491139 fastq.gz 3.1 GB Report
EGAF00003491140 fastq.gz 2.3 GB Report
EGAF00003491141 fastq.gz 2.4 GB Report
EGAF00003491142 fastq.gz 2.3 GB Report
EGAF00003491143 fastq.gz 2.3 GB Report
EGAF00003491144 fastq.gz 3.4 GB Report
EGAF00003491145 fastq.gz 3.5 GB Report
EGAF00003491146 fastq.gz 3.4 GB Report
EGAF00003491147 fastq.gz 3.1 GB Report
EGAF00003491148 fastq.gz 3.5 GB Report
EGAF00003491149 fastq.gz 3.7 GB Report
EGAF00003491150 fastq.gz 3.0 GB Report
EGAF00003491151 fastq.gz 2.5 GB Report
EGAF00003491152 fastq.gz 2.7 GB Report
EGAF00003491153 fastq.gz 2.2 GB Report
EGAF00003491154 fastq.gz 3.4 GB Report
EGAF00003491155 fastq.gz 2.8 GB Report
EGAF00003491156 fastq.gz 2.7 GB Report
EGAF00003491157 fastq.gz 2.2 GB Report
EGAF00003491158 fastq.gz 2.6 GB Report
EGAF00003491159 fastq.gz 2.1 GB Report
EGAF00003491160 fastq.gz 2.5 GB Report
EGAF00003491161 fastq.gz 2.0 GB Report
EGAF00003491162 fastq.gz 4.5 GB Report
EGAF00003491163 fastq.gz 4.0 GB Report
EGAF00003491164 fastq.gz 3.5 GB Report
EGAF00003491165 fastq.gz 2.9 GB Report
EGAF00003491166 fastq.gz 4.6 GB Report
EGAF00003491167 fastq.gz 3.9 GB Report
EGAF00003491168 fastq.gz 4.2 GB Report
EGAF00003491169 fastq.gz 3.6 GB Report
EGAF00003491170 fastq.gz 3.1 GB Report
EGAF00003491171 fastq.gz 2.6 GB Report
EGAF00003491172 fastq.gz 3.8 GB Report
EGAF00003491173 fastq.gz 3.2 GB Report
EGAF00003491174 fastq.gz 3.0 GB Report
EGAF00003491175 fastq.gz 2.5 GB Report
EGAF00003491176 fastq.gz 3.0 GB Report
EGAF00003491177 fastq.gz 2.6 GB Report
EGAF00003491178 fastq.gz 3.3 GB Report
EGAF00003491179 fastq.gz 2.7 GB Report
EGAF00003491180 fastq.gz 3.6 GB Report
EGAF00003491181 fastq.gz 3.1 GB Report
EGAF00003491182 fastq.gz 2.9 GB Report
EGAF00003491183 fastq.gz 2.4 GB Report
EGAF00003491184 fastq.gz 3.4 GB Report
EGAF00003491185 fastq.gz 2.8 GB Report
EGAF00003491186 fastq.gz 3.5 GB Report
EGAF00003491187 fastq.gz 3.1 GB Report
EGAF00003491188 fastq.gz 2.3 GB Report
EGAF00003491189 fastq.gz 2.3 GB Report
EGAF00003491190 fastq.gz 1.8 GB Report
EGAF00003491191 fastq.gz 1.8 GB Report
EGAF00003491192 fastq.gz 4.3 GB Report
EGAF00003491193 fastq.gz 3.6 GB Report
EGAF00003491194 fastq.gz 3.2 GB Report
EGAF00003491195 fastq.gz 2.7 GB Report
EGAF00003491196 fastq.gz 2.6 GB Report
EGAF00003491197 fastq.gz 2.1 GB Report
EGAF00003491198 fastq.gz 3.9 GB Report
EGAF00003491199 fastq.gz 3.5 GB Report
EGAF00003491200 fastq.gz 4.0 GB Report
EGAF00003491201 fastq.gz 3.4 GB Report
EGAF00003491202 fastq.gz 3.2 GB Report
EGAF00003491203 fastq.gz 2.7 GB Report
EGAF00003491204 fastq.gz 3.6 GB Report
EGAF00003491205 fastq.gz 3.1 GB Report
EGAF00003491206 fastq.gz 3.3 GB Report
EGAF00003491207 fastq.gz 2.8 GB Report
EGAF00003491208 fastq.gz 3.9 GB Report
EGAF00003491209 fastq.gz 3.3 GB Report
EGAF00003491210 fastq.gz 3.6 GB Report
EGAF00003491211 fastq.gz 3.2 GB Report
EGAF00003491212 fastq.gz 3.7 GB Report
EGAF00003491213 fastq.gz 3.0 GB Report
EGAF00003491214 fastq.gz 3.9 GB Report
EGAF00003491215 fastq.gz 3.3 GB Report
EGAF00003491216 fastq.gz 4.2 GB Report
EGAF00003491217 fastq.gz 3.5 GB Report
EGAF00003491218 fastq.gz 3.6 GB Report
EGAF00003491219 fastq.gz 3.2 GB Report
EGAF00003491220 fastq.gz 2.3 GB Report
EGAF00003491221 fastq.gz 1.8 GB Report
EGAF00003491222 fastq.gz 5.4 GB Report
EGAF00003491223 fastq.gz 4.5 GB Report
EGAF00003491224 fastq.gz 2.8 GB Report
EGAF00003491225 fastq.gz 2.4 GB Report
EGAF00003491226 fastq.gz 5.1 GB Report
EGAF00003491227 fastq.gz 4.3 GB Report
EGAF00003491228 fastq.gz 2.2 GB Report
EGAF00003491229 fastq.gz 2.2 GB Report
EGAF00003491230 fastq.gz 2.2 GB Report
EGAF00003491231 fastq.gz 2.3 GB Report
EGAF00003491232 fastq.gz 2.3 GB Report
EGAF00003491233 fastq.gz 2.3 GB Report
EGAF00003491234 fastq.gz 3.3 GB Report
EGAF00003491235 fastq.gz 2.8 GB Report
EGAF00003491236 fastq.gz 4.7 GB Report
EGAF00003491237 fastq.gz 3.9 GB Report
EGAF00003491238 fastq.gz 2.0 GB Report
EGAF00003491239 fastq.gz 1.7 GB Report
EGAF00003491240 fastq.gz 5.4 GB Report
EGAF00003491241 fastq.gz 4.5 GB Report
EGAF00003491242 fastq.gz 2.3 GB Report
EGAF00003491243 fastq.gz 2.4 GB Report
EGAF00003491244 fastq.gz 3.8 GB Report
EGAF00003491245 fastq.gz 3.3 GB Report
EGAF00003491246 fastq.gz 2.2 GB Report
EGAF00003491247 fastq.gz 2.3 GB Report
EGAF00003491248 fastq.gz 2.0 GB Report
EGAF00003491249 fastq.gz 2.0 GB Report
EGAF00003491250 fastq.gz 2.3 GB Report
EGAF00003491251 fastq.gz 2.3 GB Report
EGAF00003491252 fastq.gz 2.6 GB Report
EGAF00003491253 fastq.gz 2.7 GB Report
EGAF00003491254 fastq.gz 2.6 GB Report
EGAF00003491255 fastq.gz 2.7 GB Report
EGAF00003491256 fastq.gz 2.0 GB Report
EGAF00003491257 fastq.gz 1.6 GB Report
EGAF00003491258 fastq.gz 2.8 GB Report
EGAF00003491259 fastq.gz 2.8 GB Report
EGAF00003491260 fastq.gz 3.4 GB Report
EGAF00003491261 fastq.gz 3.6 GB Report
EGAF00003491262 fastq.gz 3.4 GB Report
EGAF00003491263 fastq.gz 3.5 GB Report
174 Files (541.2 GB)