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NICHE - DNA-seq of MMR proficient and MMR deficient early stage colon cancers

The dataset includes 174 FASTQ files from paired-end WXS sequencing on Illumina HiSeq2500 for 39 patients.

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Data Access Policy for the NICHE DNA and RNA sequencing datasets

To request access to the NICHE DNA/RNA sequencing datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Abstract of the Project in which the Data will be used (research proposal and research questions) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt, review and approval of your Data Access Request by the Data Access Committee and the IRB, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). Please note the Data Access Committee reserves the right to withhold granting access to requested datasets.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004160 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003447656 fastq.gz 3.3 GB
EGAF00003447657 fastq.gz 3.5 GB
EGAF00003447658 fastq.gz 3.3 GB
EGAF00003447659 fastq.gz 3.5 GB
EGAF00003447660 fastq.gz 3.4 GB
EGAF00003447661 fastq.gz 3.5 GB
EGAF00003491096 fastq.gz 3.1 GB
EGAF00003491097 fastq.gz 3.2 GB
EGAF00003491098 fastq.gz 3.3 GB
EGAF00003491099 fastq.gz 2.9 GB
EGAF00003491100 fastq.gz 3.2 GB
EGAF00003491101 fastq.gz 3.3 GB
EGAF00003491102 fastq.gz 3.2 GB
EGAF00003491103 fastq.gz 3.3 GB
EGAF00003491104 fastq.gz 3.3 GB
EGAF00003491105 fastq.gz 3.4 GB
EGAF00003491106 fastq.gz 3.7 GB
EGAF00003491107 fastq.gz 3.9 GB
EGAF00003491108 fastq.gz 3.3 GB
EGAF00003491109 fastq.gz 3.4 GB
EGAF00003491110 fastq.gz 3.5 GB
EGAF00003491111 fastq.gz 3.7 GB
EGAF00003491112 fastq.gz 3.3 GB
EGAF00003491113 fastq.gz 3.4 GB
EGAF00003491114 fastq.gz 3.2 GB
EGAF00003491115 fastq.gz 3.3 GB
EGAF00003491116 fastq.gz 3.2 GB
EGAF00003491117 fastq.gz 3.4 GB
EGAF00003491118 fastq.gz 3.4 GB
EGAF00003491119 fastq.gz 3.5 GB
EGAF00003491120 fastq.gz 3.1 GB
EGAF00003491121 fastq.gz 3.3 GB
EGAF00003491122 fastq.gz 3.2 GB
EGAF00003491123 fastq.gz 3.4 GB
EGAF00003491124 fastq.gz 3.2 GB
EGAF00003491125 fastq.gz 2.6 GB
EGAF00003491126 fastq.gz 2.9 GB
EGAF00003491127 fastq.gz 3.1 GB
EGAF00003491128 fastq.gz 3.4 GB
EGAF00003491129 fastq.gz 3.5 GB
EGAF00003491130 fastq.gz 3.3 GB
EGAF00003491131 fastq.gz 2.9 GB
EGAF00003491132 fastq.gz 2.9 GB
EGAF00003491133 fastq.gz 3.0 GB
EGAF00003491134 fastq.gz 3.4 GB
EGAF00003491135 fastq.gz 3.6 GB
EGAF00003491136 fastq.gz 3.1 GB
EGAF00003491137 fastq.gz 2.5 GB
EGAF00003491138 fastq.gz 3.0 GB
EGAF00003491139 fastq.gz 3.1 GB
EGAF00003491140 fastq.gz 2.3 GB
EGAF00003491141 fastq.gz 2.4 GB
EGAF00003491142 fastq.gz 2.3 GB
EGAF00003491143 fastq.gz 2.3 GB
EGAF00003491144 fastq.gz 3.4 GB
EGAF00003491145 fastq.gz 3.5 GB
EGAF00003491146 fastq.gz 3.4 GB
EGAF00003491147 fastq.gz 3.1 GB
EGAF00003491148 fastq.gz 3.5 GB
EGAF00003491149 fastq.gz 3.7 GB
EGAF00003491150 fastq.gz 3.0 GB
EGAF00003491151 fastq.gz 2.5 GB
EGAF00003491152 fastq.gz 2.7 GB
EGAF00003491153 fastq.gz 2.2 GB
EGAF00003491154 fastq.gz 3.4 GB
EGAF00003491155 fastq.gz 2.8 GB
EGAF00003491156 fastq.gz 2.7 GB
EGAF00003491157 fastq.gz 2.2 GB
EGAF00003491158 fastq.gz 2.6 GB
EGAF00003491159 fastq.gz 2.1 GB
EGAF00003491160 fastq.gz 2.5 GB
EGAF00003491161 fastq.gz 2.0 GB
EGAF00003491162 fastq.gz 4.5 GB
EGAF00003491163 fastq.gz 4.0 GB
EGAF00003491164 fastq.gz 3.5 GB
EGAF00003491165 fastq.gz 2.9 GB
EGAF00003491166 fastq.gz 4.6 GB
EGAF00003491167 fastq.gz 3.9 GB
EGAF00003491168 fastq.gz 4.2 GB
EGAF00003491169 fastq.gz 3.6 GB
EGAF00003491170 fastq.gz 3.1 GB
EGAF00003491171 fastq.gz 2.6 GB
EGAF00003491172 fastq.gz 3.8 GB
EGAF00003491173 fastq.gz 3.2 GB
EGAF00003491174 fastq.gz 3.0 GB
EGAF00003491175 fastq.gz 2.5 GB
EGAF00003491176 fastq.gz 3.0 GB
EGAF00003491177 fastq.gz 2.6 GB
EGAF00003491178 fastq.gz 3.3 GB
EGAF00003491179 fastq.gz 2.7 GB
EGAF00003491180 fastq.gz 3.6 GB
EGAF00003491181 fastq.gz 3.1 GB
EGAF00003491182 fastq.gz 2.9 GB
EGAF00003491183 fastq.gz 2.4 GB
EGAF00003491184 fastq.gz 3.4 GB
EGAF00003491185 fastq.gz 2.8 GB
EGAF00003491186 fastq.gz 3.5 GB
EGAF00003491187 fastq.gz 3.1 GB
EGAF00003491188 fastq.gz 2.3 GB
EGAF00003491189 fastq.gz 2.3 GB
EGAF00003491190 fastq.gz 1.8 GB
EGAF00003491191 fastq.gz 1.8 GB
EGAF00003491192 fastq.gz 4.3 GB
EGAF00003491193 fastq.gz 3.6 GB
EGAF00003491194 fastq.gz 3.2 GB
EGAF00003491195 fastq.gz 2.7 GB
EGAF00003491196 fastq.gz 2.6 GB
EGAF00003491197 fastq.gz 2.1 GB
EGAF00003491198 fastq.gz 3.9 GB
EGAF00003491199 fastq.gz 3.5 GB
EGAF00003491200 fastq.gz 4.0 GB
EGAF00003491201 fastq.gz 3.4 GB
EGAF00003491202 fastq.gz 3.2 GB
EGAF00003491203 fastq.gz 2.7 GB
EGAF00003491204 fastq.gz 3.6 GB
EGAF00003491205 fastq.gz 3.1 GB
EGAF00003491206 fastq.gz 3.3 GB
EGAF00003491207 fastq.gz 2.8 GB
EGAF00003491208 fastq.gz 3.9 GB
EGAF00003491209 fastq.gz 3.3 GB
EGAF00003491210 fastq.gz 3.6 GB
EGAF00003491211 fastq.gz 3.2 GB
EGAF00003491212 fastq.gz 3.7 GB
EGAF00003491213 fastq.gz 3.0 GB
EGAF00003491214 fastq.gz 3.9 GB
EGAF00003491215 fastq.gz 3.3 GB
EGAF00003491216 fastq.gz 4.2 GB
EGAF00003491217 fastq.gz 3.5 GB
EGAF00003491218 fastq.gz 3.6 GB
EGAF00003491219 fastq.gz 3.2 GB
EGAF00003491220 fastq.gz 2.3 GB
EGAF00003491221 fastq.gz 1.8 GB
EGAF00003491222 fastq.gz 5.4 GB
EGAF00003491223 fastq.gz 4.5 GB
EGAF00003491224 fastq.gz 2.8 GB
EGAF00003491225 fastq.gz 2.4 GB
EGAF00003491226 fastq.gz 5.1 GB
EGAF00003491227 fastq.gz 4.3 GB
EGAF00003491228 fastq.gz 2.2 GB
EGAF00003491229 fastq.gz 2.2 GB
EGAF00003491230 fastq.gz 2.2 GB
EGAF00003491231 fastq.gz 2.3 GB
EGAF00003491232 fastq.gz 2.3 GB
EGAF00003491233 fastq.gz 2.3 GB
EGAF00003491234 fastq.gz 3.3 GB
EGAF00003491235 fastq.gz 2.8 GB
EGAF00003491236 fastq.gz 4.7 GB
EGAF00003491237 fastq.gz 3.9 GB
EGAF00003491238 fastq.gz 2.0 GB
EGAF00003491239 fastq.gz 1.7 GB
EGAF00003491240 fastq.gz 5.4 GB
EGAF00003491241 fastq.gz 4.5 GB
EGAF00003491242 fastq.gz 2.3 GB
EGAF00003491243 fastq.gz 2.4 GB
EGAF00003491244 fastq.gz 3.8 GB
EGAF00003491245 fastq.gz 3.3 GB
EGAF00003491246 fastq.gz 2.2 GB
EGAF00003491247 fastq.gz 2.3 GB
EGAF00003491248 fastq.gz 2.0 GB
EGAF00003491249 fastq.gz 2.0 GB
EGAF00003491250 fastq.gz 2.3 GB
EGAF00003491251 fastq.gz 2.3 GB
EGAF00003491252 fastq.gz 2.6 GB
EGAF00003491253 fastq.gz 2.7 GB
EGAF00003491254 fastq.gz 2.6 GB
EGAF00003491255 fastq.gz 2.7 GB
EGAF00003491256 fastq.gz 2.0 GB
EGAF00003491257 fastq.gz 1.6 GB
EGAF00003491258 fastq.gz 2.8 GB
EGAF00003491259 fastq.gz 2.8 GB
EGAF00003491260 fastq.gz 3.4 GB
EGAF00003491261 fastq.gz 3.6 GB
EGAF00003491262 fastq.gz 3.4 GB
EGAF00003491263 fastq.gz 3.5 GB
174 Files (541.2 GB)