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NICHE - RNA-seq of MMR proficient and MMR deficient early stage colon cancers

The dataset includes 77 FASTQ files from single-end total RNA sequencing on Illumina HiSeq2500 for 39 patients.

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Data Access Policy for the NICHE DNA and RNA sequencing datasets

To request access to the NICHE DNA/RNA sequencing datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Abstract of the Project in which the Data will be used (research proposal and research questions) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt, review and approval of your Data Access Request by the Data Access Committee and the IRB, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). Please note the Data Access Committee reserves the right to withhold granting access to requested datasets.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004160 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003447662 fastq.gz 1.0 GB
EGAF00003447663 fastq.gz 1.1 GB
EGAF00003447664 fastq.gz 659.2 MB
EGAF00003447665 fastq.gz 692.6 MB
EGAF00003447666 fastq.gz 353.8 MB
EGAF00003447667 fastq.gz 1.6 GB
EGAF00003447668 fastq.gz 1.3 GB
EGAF00003447669 fastq.gz 1.3 GB
EGAF00003447670 fastq.gz 1.3 GB
EGAF00003447671 fastq.gz 1.3 GB
EGAF00003447672 fastq.gz 959.6 MB
EGAF00003447673 fastq.gz 436.0 MB
EGAF00003447674 fastq.gz 699.8 MB
EGAF00003447675 fastq.gz 721.2 MB
EGAF00003447676 fastq.gz 567.7 MB
EGAF00003447677 fastq.gz 737.1 MB
EGAF00003447678 fastq.gz 980.0 MB
EGAF00003447679 fastq.gz 511.2 MB
EGAF00003447680 fastq.gz 1.2 GB
EGAF00003447681 fastq.gz 562.0 MB
EGAF00003447682 fastq.gz 698.5 MB
EGAF00003447683 fastq.gz 1.5 GB
EGAF00003447684 fastq.gz 1.1 GB
EGAF00003447685 fastq.gz 1.0 GB
EGAF00003447686 fastq.gz 1.5 GB
EGAF00003447687 fastq.gz 827.2 MB
EGAF00003447688 fastq.gz 1.4 GB
EGAF00003447689 fastq.gz 1.2 GB
EGAF00003447690 fastq.gz 1.1 GB
EGAF00003447691 fastq.gz 826.5 MB
EGAF00003447692 fastq.gz 1.3 GB
EGAF00003447693 fastq.gz 607.1 MB
EGAF00003447694 fastq.gz 1.3 GB
EGAF00003447695 fastq.gz 548.2 MB
EGAF00003447696 fastq.gz 924.0 MB
EGAF00003447697 fastq.gz 1.6 GB
EGAF00003447698 fastq.gz 667.2 MB
EGAF00003447699 fastq.gz 1.1 GB
EGAF00003447700 fastq.gz 616.2 MB
EGAF00003447701 fastq.gz 1.2 GB
EGAF00003447702 fastq.gz 878.5 MB
EGAF00003447703 fastq.gz 1.1 GB
EGAF00003447704 fastq.gz 822.7 MB
EGAF00003447705 fastq.gz 857.8 MB
EGAF00003447706 fastq.gz 263.2 MB
EGAF00003447707 fastq.gz 824.1 MB
EGAF00003447708 fastq.gz 1.2 GB
EGAF00003447709 fastq.gz 850.5 MB
EGAF00003447710 fastq.gz 1.7 GB
EGAF00003447711 fastq.gz 388.5 MB
EGAF00003447712 fastq.gz 1.1 GB
EGAF00003447713 fastq.gz 893.8 MB
EGAF00003447714 fastq.gz 1.1 GB
EGAF00003447715 fastq.gz 866.5 MB
EGAF00003447716 fastq.gz 1.1 GB
EGAF00003447717 fastq.gz 480.1 MB
EGAF00003447718 fastq.gz 954.2 MB
EGAF00003447719 fastq.gz 1.2 GB
EGAF00003447720 fastq.gz 635.8 MB
EGAF00003447721 fastq.gz 1.0 GB
EGAF00003447722 fastq.gz 463.5 MB
EGAF00003447723 fastq.gz 691.4 MB
EGAF00003447724 fastq.gz 674.0 MB
EGAF00003447725 fastq.gz 1.5 GB
EGAF00003447726 fastq.gz 512.4 MB
EGAF00003447727 fastq.gz 942.9 MB
EGAF00003447728 fastq.gz 917.2 MB
EGAF00003447729 fastq.gz 1.5 GB
EGAF00003447730 fastq.gz 1.0 GB
EGAF00003447731 fastq.gz 759.1 MB
EGAF00003447732 fastq.gz 665.2 MB
EGAF00003447733 fastq.gz 470.9 MB
EGAF00003447734 fastq.gz 678.2 MB
EGAF00003447735 fastq.gz 1.5 GB
EGAF00003447736 fastq.gz 1.5 GB
EGAF00003447737 fastq.gz 1.3 GB
EGAF00003447738 fastq.gz 770.7 MB
77 Files (73.2 GB)