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OSCC WES and genomes

WES (N=18) and WGS (N=2) of OSCC tumors and normals with the aim of identifying novel mutational signatures in Asian tumors

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DAC policy was copied from EGA example

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than DAC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Singapore and shall be subject to the exclusive jurisdiction of the Singaporean courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003131 Other
EGAS00001004376 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003605800 fq.gz 7.4 GB
EGAF00003605801 fq.gz 8.6 GB
EGAF00003605802 fq.gz 9.5 GB
EGAF00003605803 fq.gz 11.0 GB
EGAF00003605804 fq.gz 6.9 GB
EGAF00003605805 fq.gz 8.0 GB
EGAF00003605806 fq.gz 7.3 GB
EGAF00003605807 fq.gz 8.5 GB
EGAF00003605808 fq.gz 7.1 GB
EGAF00003605809 fq.gz 8.1 GB
EGAF00003605810 fq.gz 6.3 GB
EGAF00003605811 fq.gz 7.1 GB
EGAF00003605812 fq.gz 7.9 GB
EGAF00003605813 fq.gz 9.0 GB
EGAF00003605814 fq.gz 6.9 GB
EGAF00003605815 fq.gz 8.1 GB
EGAF00003605816 fq.gz 5.4 GB
EGAF00003605817 fq.gz 6.3 GB
EGAF00003605818 fq.gz 1.7 GB
EGAF00003605819 fq.gz 2.0 GB
EGAF00003605820 fq.gz 1.9 GB
EGAF00003605821 fq.gz 2.2 GB
EGAF00003605822 fq.gz 2.4 GB
EGAF00003605823 fq.gz 2.8 GB
EGAF00003605824 fq.gz 2.2 GB
EGAF00003605825 fq.gz 2.5 GB
EGAF00003605826 fq.gz 2.4 GB
EGAF00003605827 fq.gz 2.7 GB
EGAF00003605828 fq.gz 1.7 GB
EGAF00003605829 fq.gz 2.0 GB
EGAF00003605830 fq.gz 1.9 GB
EGAF00003605831 fq.gz 2.2 GB
EGAF00003605832 fq.gz 2.0 GB
EGAF00003605833 fq.gz 2.2 GB
EGAF00003605834 fq.gz 2.3 GB
EGAF00003605835 fq.gz 2.7 GB
EGAF00003605836 fq.gz 2.3 GB
EGAF00003605837 fq.gz 2.7 GB
EGAF00003605838 fq.gz 1.9 GB
EGAF00003605839 fq.gz 2.2 GB
EGAF00003605840 fq.gz 2.4 GB
EGAF00003605841 fq.gz 2.7 GB
EGAF00003605842 fq.gz 7.0 GB
EGAF00003605843 fq.gz 7.9 GB
EGAF00003605844 fq.gz 6.4 GB
EGAF00003605845 fq.gz 7.5 GB
EGAF00003605846 fq.gz 2.5 GB
EGAF00003605847 fq.gz 2.8 GB
EGAF00003605848 fq.gz 2.0 GB
EGAF00003605849 fq.gz 2.3 GB
EGAF00003605850 fq.gz 1.9 GB
EGAF00003605851 fq.gz 2.1 GB
EGAF00003605852 fq.gz 2.0 GB
EGAF00003605853 fq.gz 2.3 GB
EGAF00003605854 fq.gz 1.9 GB
EGAF00003605855 fq.gz 2.2 GB
EGAF00003605856 fq.gz 15.3 GB
EGAF00003605857 fq.gz 16.1 GB
EGAF00003605858 fq.gz 2.4 GB
EGAF00003605859 fq.gz 2.7 GB
EGAF00003605860 fq.gz 1.8 GB
EGAF00003605861 fq.gz 2.1 GB
EGAF00003605862 fq.gz 1.9 GB
EGAF00003605863 fq.gz 2.2 GB
EGAF00003605864 fq.gz 2.1 GB
EGAF00003605865 fq.gz 2.4 GB
EGAF00003605866 fq.gz 2.3 GB
EGAF00003605867 fq.gz 2.5 GB
EGAF00003605868 fq.gz 2.3 GB
EGAF00003605869 fq.gz 2.7 GB
EGAF00003605870 fq.gz 2.1 GB
EGAF00003605871 fq.gz 2.4 GB
EGAF00003605872 fq.gz 1.8 GB
EGAF00003605873 fq.gz 2.0 GB
EGAF00003605874 fq.gz 1.7 GB
EGAF00003605875 fq.gz 2.0 GB
EGAF00003605876 fq.gz 1.9 GB
EGAF00003605877 fq.gz 2.1 GB
EGAF00003605878 fq.gz 2.5 GB
EGAF00003605879 fq.gz 2.8 GB
EGAF00003605880 fq.gz 1.8 GB
EGAF00003605881 fq.gz 2.2 GB
EGAF00003605882 fq.gz 15.1 GB
EGAF00003605883 fq.gz 15.5 GB
EGAF00003605884 fq.gz 1.7 GB
EGAF00003605885 fq.gz 2.0 GB
EGAF00003605886 fq.gz 13.8 GB
EGAF00003605887 fq.gz 14.1 GB
EGAF00003605888 fq.gz 11.1 GB
EGAF00003605889 fq.gz 11.6 GB
EGAF00003605890 fq.gz 14.9 GB
EGAF00003605891 fq.gz 15.5 GB
EGAF00003605892 fq.gz 17.0 GB
EGAF00003605893 fq.gz 17.8 GB
EGAF00003605894 fq.gz 11.8 GB
EGAF00003605895 fq.gz 12.4 GB
EGAF00003605896 fq.gz 16.0 GB
EGAF00003605897 fq.gz 16.5 GB
EGAF00003605898 fq.gz 2.0 GB
EGAF00003605899 fq.gz 2.2 GB
EGAF00003605900 fq.gz 12.5 GB
EGAF00003605901 fq.gz 13.2 GB
EGAF00003605902 fq.gz 11.5 GB
EGAF00003605903 fq.gz 12.0 GB
EGAF00003605904 fq.gz 6.1 GB
EGAF00003605905 fq.gz 7.0 GB
EGAF00003605906 fq.gz 5.9 GB
EGAF00003605907 fq.gz 6.8 GB
EGAF00003605908 fq.gz 12.7 GB
EGAF00003605909 fq.gz 13.1 GB
EGAF00003605910 fq.gz 1.9 GB
EGAF00003605911 fq.gz 2.2 GB
EGAF00003605912 fq.gz 8.5 GB
EGAF00003605913 fq.gz 9.7 GB
EGAF00003605914 fq.gz 4.9 GB
EGAF00003605915 fq.gz 5.6 GB
EGAF00003605916 fq.gz 5.4 GB
EGAF00003605917 fq.gz 6.2 GB
EGAF00003605918 fq.gz 2.1 GB
EGAF00003605919 fq.gz 2.4 GB
EGAF00003605920 fq.gz 1.9 GB
EGAF00003605921 fq.gz 2.2 GB
EGAF00003605922 fq.gz 2.4 GB
EGAF00003605923 fq.gz 2.8 GB
EGAF00003605924 fq.gz 1.9 GB
EGAF00003605925 fq.gz 2.1 GB
EGAF00003605938 fq.gz 5.0 GB
EGAF00003605939 fq.gz 5.3 GB
128 Files (713.0 GB)