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Sci Trans Med - Mouliere et al, 2018. Non-ovarian cancer samples - STM4

fastq files for shallow whole genome sequencing data as described in Mouliere et al, 2018. Files are those not included in STM2 i.e. these are largely non-ovarian cancer samples

Request Access

Policy for access to data included in the following publication; Enhanced detection of circulating tumor DNA by fragment size analysis

Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE of The Old Schools, Trinity Lane, Cambridge CB2 1TN, United Kingdom and the Cambridge University Hospitals NHS Foundation Trust of Addenbrooke’s Hospital, Cambridge, CB2 0QQ; represented by staff of the Rosenfeld Group at the Cancer Research UK Cambridge Institute, and contactable by email at Rosenfeld.LabAdmin@cruk.cam.ac.uk or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number, hospital number or NHS number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. 2. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. 3. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. 4. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 5. You agree to acknowledge in any Publication based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. 6. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 7. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. 8. You recognise that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. 9. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 10. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 11. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. 12. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organisational measures against the unauthorised or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A 1.1 You acknowledge and agree that the Data is pseudonymised Data and that You will become the Data Controller on receipt of such Data. 1.2 You will only process the Data for the purpose of carrying out the Project. 1.3 You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. 1.4 The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. 1.5 You agree that You shall not analyse or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. 1.6 You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data. Schedule B Name of the applicant and co-applicant(s), including affiliations, titles and contact details. For dataset deposited at EGA, applicants must have registered accounts at EGA. Student applicants must include their supervisors as a co-applicant. Name of registered user; Email; Job title; Supervisor*; Title of Project (in less than 30 words) Data Requested (please indicate relevant publication(s) describing the data, accession number(s) and/or relevant links to data, and [where relevant] details of and links to the respective Data Access Committee(s) (DAC)) Research Project: Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data and include key references. Brief description of the infrastructure and experience for handling the requested data securely Signature of authorized signatory of User Institution Signature; Name; Title; Date; Signature of Principal Investigator I confirm that I have read and understood the TERMS AND CONDITIONS as set forth in this DATA ACCESS REQUEST FORM. Signature; Name; Title; Date; ~~~~~~~ Data Access Request Form, V1 CRUK-CI, Rosenfeld Lab, July 2019

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004418 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003684725 fq.gz 2.1 GB
EGAF00003684726 fq.gz 2.4 GB
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EGAF00003684728 fq.gz 824.8 MB
EGAF00003684729 fq.gz 1.6 GB
EGAF00003684730 fq.gz 1.9 GB
EGAF00003684731 fq.gz 2.1 GB
EGAF00003684732 fq.gz 2.4 GB
EGAF00003684733 fq.gz 1.2 GB
EGAF00003684734 fq.gz 1.4 GB
EGAF00003684735 fq.gz 1.4 GB
EGAF00003684736 fq.gz 1.6 GB
EGAF00003684737 fq.gz 630.9 MB
EGAF00003684738 fq.gz 736.2 MB
EGAF00003684739 fq.gz 2.5 GB
EGAF00003684740 fq.gz 2.9 GB
EGAF00003684741 fq.gz 634.0 MB
EGAF00003684742 fq.gz 728.4 MB
EGAF00003684743 fq.gz 660.8 MB
EGAF00003684744 fq.gz 756.3 MB
EGAF00003684745 fq.gz 761.1 MB
EGAF00003684746 fq.gz 874.9 MB
EGAF00003684747 fq.gz 1.3 GB
EGAF00003684748 fq.gz 1.5 GB
EGAF00003684749 fq.gz 2.0 GB
EGAF00003684750 fq.gz 2.2 GB
EGAF00003684751 fq.gz 824.2 MB
EGAF00003684752 fq.gz 800.1 MB
EGAF00003684753 fq.gz 1.1 GB
EGAF00003684754 fq.gz 1.3 GB
EGAF00003684755 fq.gz 715.2 MB
EGAF00003684756 fq.gz 791.3 MB
EGAF00003684757 fq.gz 1.9 GB
EGAF00003684758 fq.gz 2.0 GB
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EGAF00003684760 fq.gz 1.5 GB
EGAF00003684761 fq.gz 767.2 MB
EGAF00003684762 fq.gz 844.0 MB
EGAF00003684763 fq.gz 826.9 MB
EGAF00003684764 fq.gz 908.9 MB
EGAF00003684765 fq.gz 425.5 MB
EGAF00003684766 fq.gz 478.8 MB
EGAF00003684767 fq.gz 1.4 GB
EGAF00003684768 fq.gz 1.5 GB
EGAF00003684769 fq.gz 1.2 GB
EGAF00003684770 fq.gz 1.3 GB
EGAF00003684771 fq.gz 840.0 MB
EGAF00003684772 fq.gz 932.3 MB
EGAF00003684773 fq.gz 374.1 MB
EGAF00003684774 fq.gz 378.9 MB
EGAF00003684775 fq.gz 343.0 MB
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EGAF00003684777 fq.gz 286.9 MB
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EGAF00003684779 fq.gz 276.9 MB
EGAF00003684780 fq.gz 279.4 MB
EGAF00003684781 fq.gz 408.5 MB
EGAF00003684782 fq.gz 409.5 MB
EGAF00003684783 fq.gz 316.4 MB
EGAF00003684784 fq.gz 327.0 MB
EGAF00003684785 fq.gz 309.4 MB
EGAF00003684786 fq.gz 312.9 MB
EGAF00003684787 fq.gz 1.3 GB
EGAF00003684788 fq.gz 1.4 GB
EGAF00003684789 fq.gz 1.5 GB
EGAF00003684790 fq.gz 1.6 GB
EGAF00003684791 fq.gz 1.2 GB
EGAF00003684792 fq.gz 1.3 GB
EGAF00003684793 fq.gz 1.0 GB
EGAF00003684794 fq.gz 1.2 GB
EGAF00003684795 fq.gz 1.1 GB
EGAF00003684796 fq.gz 1.3 GB
EGAF00003684797 fq.gz 1.2 GB
EGAF00003684798 fq.gz 1.4 GB
EGAF00003684799 fq.gz 1.1 GB
EGAF00003684800 fq.gz 1.3 GB
EGAF00003684801 fq.gz 1.1 GB
EGAF00003684802 fq.gz 1.3 GB
EGAF00003684803 fq.gz 920.9 MB
EGAF00003684804 fq.gz 1.0 GB
EGAF00003684805 fq.gz 724.9 MB
EGAF00003684806 fq.gz 828.3 MB
EGAF00003684807 fq.gz 861.9 MB
EGAF00003684808 fq.gz 984.1 MB
EGAF00003684809 fq.gz 5.8 MB
EGAF00003684810 fq.gz 6.4 MB
EGAF00003684811 fq.gz 1.6 GB
EGAF00003684812 fq.gz 1.8 GB
EGAF00003684813 fq.gz 1.4 GB
EGAF00003684814 fq.gz 1.5 GB
EGAF00003684815 fq.gz 706.6 MB
EGAF00003684816 fq.gz 771.5 MB
EGAF00003684817 fq.gz 282.1 MB
EGAF00003684818 fq.gz 308.8 MB
EGAF00003684819 fq.gz 650.2 MB
EGAF00003684820 fq.gz 753.4 MB
EGAF00003684821 fq.gz 497.8 MB
EGAF00003684822 fq.gz 601.5 MB
EGAF00003684823 fq.gz 438.8 MB
EGAF00003684824 fq.gz 511.9 MB
EGAF00003684825 fq.gz 1.1 GB
EGAF00003684826 fq.gz 1.3 GB
EGAF00003684827 fq.gz 550.5 MB
EGAF00003684828 fq.gz 623.8 MB
EGAF00003684829 fq.gz 488.4 MB
EGAF00003684830 fq.gz 557.0 MB
EGAF00003684831 fq.gz 1.1 GB
EGAF00003684832 fq.gz 1.3 GB
EGAF00003684833 fq.gz 942.4 MB
EGAF00003684834 fq.gz 1.1 GB
EGAF00003684835 fq.gz 830.2 MB
EGAF00003684836 fq.gz 952.8 MB
EGAF00003684837 fq.gz 1.2 GB
EGAF00003684838 fq.gz 1.3 GB
EGAF00003684839 fq.gz 985.0 MB
EGAF00003684840 fq.gz 1.1 GB
EGAF00003684841 fq.gz 981.3 MB
EGAF00003684842 fq.gz 1.1 GB
EGAF00003684843 fq.gz 1.3 GB
EGAF00003684844 fq.gz 1.4 GB
EGAF00003684845 fq.gz 1.2 GB
EGAF00003684846 fq.gz 1.4 GB
EGAF00003684847 fq.gz 1.4 GB
EGAF00003684848 fq.gz 1.6 GB
EGAF00003684849 fq.gz 686.5 MB
EGAF00003684850 fq.gz 797.1 MB
EGAF00003684851 fq.gz 1.2 GB
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EGAF00003684856 fq.gz 1.5 GB
EGAF00003684857 fq.gz 1.1 GB
EGAF00003684858 fq.gz 1.3 GB
EGAF00003684859 fq.gz 1.1 GB
EGAF00003684860 fq.gz 1.3 GB
EGAF00003684861 fq.gz 962.4 MB
EGAF00003684862 fq.gz 1.1 GB
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EGAF00003684864 fq.gz 1.9 GB
EGAF00003684865 fq.gz 1.1 GB
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EGAF00003684867 fq.gz 1.6 GB
EGAF00003684868 fq.gz 1.9 GB
EGAF00003684869 fq.gz 1.1 GB
EGAF00003684870 fq.gz 1.3 GB
EGAF00003684871 fq.gz 1.1 GB
EGAF00003684872 fq.gz 1.3 GB
EGAF00003684873 fq.gz 1.1 GB
EGAF00003684874 fq.gz 1.3 GB
EGAF00003684875 fq.gz 1.1 GB
EGAF00003684876 fq.gz 1.3 GB
EGAF00003684877 fq.gz 938.7 MB
EGAF00003684878 fq.gz 1.1 GB
EGAF00003684879 fq.gz 1.0 GB
EGAF00003684880 fq.gz 1.2 GB
EGAF00003684881 fq.gz 1.3 GB
EGAF00003684882 fq.gz 1.5 GB
EGAF00003684883 fq.gz 1.1 GB
EGAF00003684884 fq.gz 1.3 GB
EGAF00003684885 fq.gz 1.3 GB
EGAF00003684886 fq.gz 1.4 GB
EGAF00003684887 fq.gz 1.3 GB
EGAF00003684888 fq.gz 1.5 GB
EGAF00003684889 fq.gz 1.1 GB
EGAF00003684890 fq.gz 1.2 GB
EGAF00003684891 fq.gz 409.3 MB
EGAF00003684892 fq.gz 465.7 MB
EGAF00003684893 fq.gz 380.3 MB
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EGAF00003684895 fq.gz 102.2 MB
EGAF00003684896 fq.gz 116.8 MB
EGAF00003684897 fq.gz 251.7 MB
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EGAF00003684899 fq.gz 27.2 MB
EGAF00003684900 fq.gz 26.9 MB
EGAF00003684901 fq.gz 275.5 MB
EGAF00003684902 fq.gz 307.2 MB
EGAF00003684903 fq.gz 506.8 MB
EGAF00003684904 fq.gz 559.3 MB
EGAF00003684905 fq.gz 652.0 MB
EGAF00003684906 fq.gz 726.8 MB
EGAF00003684907 fq.gz 650.5 MB
EGAF00003684908 fq.gz 723.5 MB
EGAF00003684909 fq.gz 2.0 GB
EGAF00003684910 fq.gz 2.3 GB
EGAF00003684911 fq.gz 564.3 MB
EGAF00003684912 fq.gz 643.3 MB
EGAF00003684913 fq.gz 118.2 MB
EGAF00003684914 fq.gz 116.7 MB
EGAF00003684915 fq.gz 712.0 MB
EGAF00003684916 fq.gz 791.4 MB
EGAF00003684917 fq.gz 230.6 MB
EGAF00003684918 fq.gz 239.6 MB
EGAF00003684919 fq.gz 1.4 GB
EGAF00003684920 fq.gz 1.5 GB
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EGAF00003684922 fq.gz 474.8 MB
EGAF00003684923 fq.gz 599.4 MB
EGAF00003684924 fq.gz 694.4 MB
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EGAF00003684937 fq.gz 519.1 MB
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EGAF00003684943 fq.gz 527.8 MB
EGAF00003684944 fq.gz 615.1 MB
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EGAF00003684979 fq.gz 450.4 MB
EGAF00003684980 fq.gz 524.0 MB
EGAF00003684981 fq.gz 521.1 MB
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EGAF00003684985 fq.gz 567.1 MB
EGAF00003684986 fq.gz 659.4 MB
EGAF00003684987 fq.gz 1.3 GB
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EGAF00003685022 fq.gz 1.0 GB
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EGAF00003685027 fq.gz 1.1 GB
EGAF00003685028 fq.gz 1.2 GB
EGAF00003685029 fq.gz 792.3 MB
EGAF00003685030 fq.gz 874.0 MB
EGAF00003685031 fq.gz 1.0 GB
EGAF00003685032 fq.gz 1.1 GB
EGAF00003685033 fq.gz 1.1 GB
EGAF00003685034 fq.gz 1.2 GB
EGAF00003685035 fq.gz 881.0 MB
EGAF00003685036 fq.gz 969.9 MB
EGAF00003685037 fq.gz 1.2 GB
EGAF00003685038 fq.gz 1.3 GB
EGAF00003685039 fq.gz 1.1 GB
EGAF00003685040 fq.gz 1.3 GB
EGAF00003685041 fq.gz 1.0 GB
EGAF00003685042 fq.gz 1.1 GB
EGAF00003685043 fq.gz 1.3 GB
EGAF00003685044 fq.gz 1.5 GB
EGAF00003685045 fq.gz 1.3 GB
EGAF00003685046 fq.gz 1.5 GB
EGAF00003685047 fq.gz 1.3 GB
EGAF00003685048 fq.gz 1.5 GB
EGAF00003685049 fq.gz 972.7 MB
EGAF00003685050 fq.gz 1.1 GB
EGAF00003685051 fq.gz 1.3 GB
EGAF00003685052 fq.gz 1.5 GB
EGAF00003685053 fq.gz 1.4 GB
EGAF00003685054 fq.gz 1.5 GB
EGAF00003685055 fq.gz 1.7 GB
EGAF00003685056 fq.gz 1.9 GB
EGAF00003685057 fq.gz 1.3 GB
EGAF00003685058 fq.gz 1.5 GB
EGAF00003685059 fq.gz 1.3 GB
EGAF00003685060 fq.gz 1.4 GB
EGAF00003685061 fq.gz 1.1 GB
EGAF00003685062 fq.gz 1.2 GB
EGAF00003685063 fq.gz 1.1 GB
EGAF00003685064 fq.gz 1.2 GB
EGAF00003685065 fq.gz 1.1 GB
EGAF00003685066 fq.gz 1.3 GB
EGAF00003685067 fq.gz 1.3 GB
EGAF00003685068 fq.gz 1.5 GB
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584 Files (614.8 GB)