About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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bulkRNA

Bulk RNA-seq for cALL patient-derived PDX samples

Request Access

DUO:0000006
version: 2019-01-07

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2019-01-07

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

The data within this dataset will be made available to researchers from recognised academic institutions that wish to perform further research on related topics.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Prof. Tariq Enver grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Prof. Tariq Enver and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Prof. Tariq Enver within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Prof. Tariq Enver prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Prof. Tariq Enver as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Prof. Tariq Enver may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Prof. Tariq Enver. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004407 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00003681858 fastq.gz 1.9 GB Report
EGAF00003681859 fastq.gz 1.9 GB Report
EGAF00003681860 fastq.gz 1.1 GB Report
EGAF00003681861 fastq.gz 1.1 GB Report
EGAF00003681862 fastq.gz 967.8 MB Report
EGAF00003681863 fastq.gz 986.1 MB Report
EGAF00003681864 fastq.gz 1.8 GB Report
EGAF00003681865 fastq.gz 1.8 GB Report
EGAF00003681866 fastq.gz 1.4 GB Report
EGAF00003681867 fastq.gz 1.4 GB Report
EGAF00003681868 fastq.gz 1.3 GB Report
EGAF00003681869 fastq.gz 1.3 GB Report
EGAF00003681870 fastq.gz 1.7 GB Report
EGAF00003681871 fastq.gz 1.7 GB Report
EGAF00003681872 fastq.gz 1.6 GB Report
EGAF00003681873 fastq.gz 1.6 GB Report
EGAF00003681874 fastq.gz 1.8 GB Report
EGAF00003681875 fastq.gz 1.9 GB Report
EGAF00003681876 fastq.gz 713.2 MB Report
EGAF00003681877 fastq.gz 728.7 MB Report
EGAF00003681878 fastq.gz 1.9 GB Report
EGAF00003681879 fastq.gz 1.9 GB Report
EGAF00003681880 fastq.gz 1.3 GB Report
EGAF00003681881 fastq.gz 1.3 GB Report
EGAF00003681882 fastq.gz 973.6 MB Report
EGAF00003681883 fastq.gz 989.9 MB Report
EGAF00003681884 fastq.gz 1.4 GB Report
EGAF00003681885 fastq.gz 1.5 GB Report
EGAF00003681886 fastq.gz 980.6 MB Report
EGAF00003681887 fastq.gz 996.5 MB Report
EGAF00003681888 fastq.gz 1.6 GB Report
EGAF00003681889 fastq.gz 1.6 GB Report
EGAF00003681890 fastq.gz 1.3 GB Report
EGAF00003681891 fastq.gz 1.3 GB Report
EGAF00003681892 fastq.gz 1.7 GB Report
EGAF00003681893 fastq.gz 1.8 GB Report
EGAF00003681894 fastq.gz 1.1 GB Report
EGAF00003681895 fastq.gz 1.2 GB Report
EGAF00003681896 fastq.gz 941.3 MB Report
EGAF00003681897 fastq.gz 962.4 MB Report
EGAF00003681898 fastq.gz 1.8 GB Report
EGAF00003681899 fastq.gz 1.8 GB Report
EGAF00003681900 fastq.gz 1.8 GB Report
EGAF00003681901 fastq.gz 1.9 GB Report
EGAF00003681902 fastq.gz 1.5 GB Report
EGAF00003681903 fastq.gz 1.6 GB Report
EGAF00003681904 fastq.gz 698.2 MB Report
EGAF00003681905 fastq.gz 711.6 MB Report
EGAF00003681906 fastq.gz 1.2 GB Report
EGAF00003681907 fastq.gz 1.2 GB Report
EGAF00003681908 fastq.gz 1.5 GB Report
EGAF00003681909 fastq.gz 1.6 GB Report
EGAF00003681910 fastq.gz 1.6 GB Report
EGAF00003681911 fastq.gz 1.7 GB Report
EGAF00003681912 fastq.gz 1.8 GB Report
EGAF00003681913 fastq.gz 1.8 GB Report
EGAF00003681914 fastq.gz 1.6 GB Report
EGAF00003681915 fastq.gz 1.7 GB Report
EGAF00003681916 fastq.gz 1.3 GB Report
EGAF00003681917 fastq.gz 1.4 GB Report
EGAF00003681918 fastq.gz 1.3 GB Report
EGAF00003681919 fastq.gz 1.3 GB Report
EGAF00003681920 fastq.gz 1.2 GB Report
EGAF00003681921 fastq.gz 1.3 GB Report
EGAF00003681922 fastq.gz 836.6 MB Report
EGAF00003681923 fastq.gz 857.9 MB Report
EGAF00003681924 fastq.gz 1.2 GB Report
EGAF00003681925 fastq.gz 1.2 GB Report
EGAF00003681926 fastq.gz 1.4 GB Report
EGAF00003681927 fastq.gz 1.4 GB Report
EGAF00003681928 fastq.gz 883.5 MB Report
EGAF00003681929 fastq.gz 900.7 MB Report
EGAF00003681930 fastq.gz 869.4 MB Report
EGAF00003681931 fastq.gz 889.6 MB Report
EGAF00003681932 fastq.gz 1.9 GB Report
EGAF00003681933 fastq.gz 2.0 GB Report
EGAF00003681934 fastq.gz 1.7 GB Report
EGAF00003681935 fastq.gz 1.9 GB Report
EGAF00003681936 fastq.gz 1.0 GB Report
EGAF00003681937 fastq.gz 1.0 GB Report
EGAF00003681938 fastq.gz 2.1 GB Report
EGAF00003681939 fastq.gz 2.2 GB Report
EGAF00003681940 fastq.gz 1.2 GB Report
EGAF00003681941 fastq.gz 1.3 GB Report
EGAF00003681942 fastq.gz 1.3 GB Report
EGAF00003681943 fastq.gz 1.4 GB Report
EGAF00003681944 fastq.gz 1.4 GB Report
EGAF00003681945 fastq.gz 1.4 GB Report
EGAF00003681946 fastq.gz 1.2 GB Report
EGAF00003681947 fastq.gz 1.3 GB Report
EGAF00003681948 fastq.gz 1.2 GB Report
EGAF00003681949 fastq.gz 1.3 GB Report
EGAF00003681950 fastq.gz 1.4 GB Report
EGAF00003681951 fastq.gz 1.5 GB Report
EGAF00003681952 fastq.gz 1.7 GB Report
EGAF00003681953 fastq.gz 1.7 GB Report
EGAF00003681954 fastq.gz 1.6 GB Report
EGAF00003681955 fastq.gz 1.6 GB Report
EGAF00003681956 fastq.gz 1.4 GB Report
EGAF00003681957 fastq.gz 1.5 GB Report
EGAF00003681958 fastq.gz 1.3 GB Report
EGAF00003681959 fastq.gz 1.3 GB Report
EGAF00003681960 fastq.gz 1.4 GB Report
EGAF00003681961 fastq.gz 1.4 GB Report
EGAF00003681962 fastq.gz 1.9 GB Report
EGAF00003681963 fastq.gz 2.0 GB Report
EGAF00003681964 fastq.gz 537.5 MB Report
EGAF00003681965 fastq.gz 547.1 MB Report
EGAF00003681966 fastq.gz 1.2 GB Report
EGAF00003681967 fastq.gz 1.3 GB Report
EGAF00003681968 fastq.gz 1.4 GB Report
EGAF00003681969 fastq.gz 1.4 GB Report
EGAF00003681970 fastq.gz 1.0 GB Report
EGAF00003681971 fastq.gz 1.1 GB Report
EGAF00003681972 fastq.gz 1.6 GB Report
EGAF00003681973 fastq.gz 1.6 GB Report
EGAF00003681974 fastq.gz 1.8 GB Report
EGAF00003681975 fastq.gz 1.8 GB Report
EGAF00003681976 fastq.gz 1.2 GB Report
EGAF00003681977 fastq.gz 1.2 GB Report
EGAF00003681978 fastq.gz 1.5 GB Report
EGAF00003681979 fastq.gz 1.6 GB Report
EGAF00003681980 fastq.gz 1.5 GB Report
EGAF00003681981 fastq.gz 1.5 GB Report
EGAF00003681982 fastq.gz 1.4 GB Report
EGAF00003681983 fastq.gz 1.5 GB Report
EGAF00003681984 fastq.gz 1.7 GB Report
EGAF00003681985 fastq.gz 1.7 GB Report
EGAF00003681986 fastq.gz 768.3 MB Report
EGAF00003681987 fastq.gz 782.0 MB Report
EGAF00003681988 fastq.gz 1.1 GB Report
EGAF00003681989 fastq.gz 1.1 GB Report
EGAF00003681990 fastq.gz 1.0 GB Report
EGAF00003681991 fastq.gz 1.1 GB Report
EGAF00003681992 fastq.gz 1.1 GB Report
EGAF00003681993 fastq.gz 1.2 GB Report
EGAF00003681994 fastq.gz 1.5 GB Report
EGAF00003681995 fastq.gz 1.6 GB Report
EGAF00003681996 fastq.gz 788.1 MB Report
EGAF00003681997 fastq.gz 803.9 MB Report
EGAF00003681998 fastq.gz 1.2 GB Report
EGAF00003681999 fastq.gz 1.3 GB Report
EGAF00003682000 fastq.gz 1.4 GB Report
EGAF00003682001 fastq.gz 1.5 GB Report
EGAF00003682002 fastq.gz 938.2 MB Report
EGAF00003682003 fastq.gz 955.9 MB Report
EGAF00003682076 fastq.gz 1.0 GB Report
EGAF00003682077 fastq.gz 1.0 GB Report
148 Files (202.4 GB)