About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole exome sequencing data for Molecular Characterization of ETMRs

This dataset contains exome sequencing data from 21 samples. Sequencing of samples using whole-exome sequencing was per- formed by creating libraries using the IlluminaTruSeq exome enrich- ment kit following the manufacturer’s instructions after size selection. Size selection was performed by fractionation using a Covaris ultra- sonicator and subsequent selection was performed using a 1.5% gel Pippin Prep cassette (Sage Science). One lane per sample has been sequenced resulting in 42 Fastq files (paired end).

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Data Access Committee for DKFZ DACO B06x

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk). Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany u.weber@Dkfz-Heidelberg.de Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Peter.Lichter@Dkfz-Heidelberg.de Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. S.Pfister@dkfz-heidelberg.de

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003256 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00003948476 fastq.gz 3.7 GB Report
EGAF00003948477 fastq.gz 3.7 GB Report
EGAF00003948478 fastq.gz 3.4 GB Report
EGAF00003948479 fastq.gz 3.5 GB Report
EGAF00003948480 fastq.gz 3.0 GB Report
EGAF00003948481 fastq.gz 3.0 GB Report
EGAF00003948482 fastq.gz 3.6 GB Report
EGAF00003948483 fastq.gz 3.6 GB Report
EGAF00003948484 fastq.gz 3.3 GB Report
EGAF00003948485 fastq.gz 3.3 GB Report
EGAF00003948486 fastq.gz 9.4 MB Report
EGAF00003948487 fastq.gz 9.4 MB Report
EGAF00003948488 fastq.gz 3.3 GB Report
EGAF00003948489 fastq.gz 3.1 GB Report
EGAF00003948490 fastq.gz 3.6 GB Report
EGAF00003948491 fastq.gz 3.5 GB Report
EGAF00003948492 fastq.gz 4.8 GB Report
EGAF00003948493 fastq.gz 4.7 GB Report
EGAF00003948494 fastq.gz 3.3 GB Report
EGAF00003948495 fastq.gz 3.2 GB Report
EGAF00003948496 fastq.gz 2.6 GB Report
EGAF00003948497 fastq.gz 2.6 GB Report
EGAF00003948498 fastq.gz 3.4 GB Report
EGAF00003948499 fastq.gz 3.4 GB Report
EGAF00003948500 fastq.gz 3.2 GB Report
EGAF00003948501 fastq.gz 3.1 GB Report
EGAF00003948502 fastq.gz 3.2 GB Report
EGAF00003948503 fastq.gz 3.2 GB Report
EGAF00003948504 fastq.gz 2.8 GB Report
EGAF00003948505 fastq.gz 2.7 GB Report
EGAF00003948506 fastq.gz 6.3 GB Report
EGAF00003948507 fastq.gz 6.4 GB Report
EGAF00003948508 fastq.gz 7.0 GB Report
EGAF00003948509 fastq.gz 7.1 GB Report
EGAF00003948510 fastq.gz 4.4 GB Report
EGAF00003948511 fastq.gz 4.4 GB Report
EGAF00003948512 fastq.gz 3.7 GB Report
EGAF00003948513 fastq.gz 3.7 GB Report
EGAF00003948514 fastq.gz 2.8 GB Report
EGAF00003948515 fastq.gz 2.9 GB Report
EGAF00003948516 fastq.gz 3.0 GB Report
EGAF00003948517 fastq.gz 3.0 GB Report
42 Files (148.4 GB)