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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole genome sequencing data for Molecular Characterization of ETMRs

This dataset contains whole genome sequencing data from 59 samples. WGS libraries were prepared using the Illumina TruSeq Nano DNA LT Library Prep or TruSeq Nano DNA HT Library Prep Kit following the manufacturer’s instructions. In brief, 100 ng of genomic DNA was fragmented to approximately 350 bp using a Covaris ultrasonicator (Covaris). The fragmented DNA was then end-repaired, size-selected using magnetic beads, extended with an ‘A’ base on the 3′ end and ligated with TruSeq paired-end indexing adapters. Up to four lanes per sample have been sequenced resulting in 222 Fastq files (paired end).

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Data Access Committee for DKFZ DACO B06x

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk). Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany u.weber@Dkfz-Heidelberg.de Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Peter.Lichter@Dkfz-Heidelberg.de Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. S.Pfister@dkfz-heidelberg.de

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003256 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00003948256 fastq.gz 17.4 GB Report
EGAF00003948257 fastq.gz 17.9 GB Report
EGAF00003948258 fastq.gz 21.0 GB Report
EGAF00003948259 fastq.gz 22.0 GB Report
EGAF00003948260 fastq.gz 18.8 GB Report
EGAF00003948261 fastq.gz 19.7 GB Report
EGAF00003948262 fastq.gz 19.0 GB Report
EGAF00003948263 fastq.gz 19.3 GB Report
EGAF00003948264 fastq.gz 18.7 GB Report
EGAF00003948265 fastq.gz 19.7 GB Report
EGAF00003948266 fastq.gz 19.3 GB Report
EGAF00003948267 fastq.gz 19.9 GB Report
EGAF00003948268 fastq.gz 19.8 GB Report
EGAF00003948269 fastq.gz 20.4 GB Report
EGAF00003948270 fastq.gz 19.5 GB Report
EGAF00003948271 fastq.gz 20.1 GB Report
EGAF00003948272 fastq.gz 36.2 GB Report
EGAF00003948273 fastq.gz 43.1 GB Report
EGAF00003948274 fastq.gz 14.0 GB Report
EGAF00003948275 fastq.gz 14.6 GB Report
EGAF00003948276 fastq.gz 18.0 GB Report
EGAF00003948277 fastq.gz 18.5 GB Report
EGAF00003948278 fastq.gz 18.1 GB Report
EGAF00003948279 fastq.gz 18.8 GB Report
EGAF00003948280 fastq.gz 20.7 GB Report
EGAF00003948281 fastq.gz 21.5 GB Report
EGAF00003948282 fastq.gz 19.7 GB Report
EGAF00003948283 fastq.gz 20.5 GB Report
EGAF00003948284 fastq.gz 19.9 GB Report
EGAF00003948285 fastq.gz 20.7 GB Report
EGAF00003948286 fastq.gz 14.0 GB Report
EGAF00003948287 fastq.gz 15.2 GB Report
EGAF00003948288 fastq.gz 14.0 GB Report
EGAF00003948289 fastq.gz 15.2 GB Report
EGAF00003948290 fastq.gz 4.1 GB Report
EGAF00003948291 fastq.gz 4.4 GB Report
EGAF00003948292 fastq.gz 4.0 GB Report
EGAF00003948293 fastq.gz 4.3 GB Report
EGAF00003948294 fastq.gz 39.7 GB Report
EGAF00003948295 fastq.gz 41.9 GB Report
EGAF00003948296 fastq.gz 14.6 GB Report
EGAF00003948297 fastq.gz 15.7 GB Report
EGAF00003948298 fastq.gz 14.6 GB Report
EGAF00003948299 fastq.gz 15.7 GB Report
EGAF00003948300 fastq.gz 18.0 GB Report
EGAF00003948301 fastq.gz 18.4 GB Report
EGAF00003948302 fastq.gz 19.4 GB Report
EGAF00003948303 fastq.gz 20.1 GB Report
EGAF00003948304 fastq.gz 19.4 GB Report
EGAF00003948305 fastq.gz 20.0 GB Report
EGAF00003948306 fastq.gz 19.6 GB Report
EGAF00003948307 fastq.gz 20.2 GB Report
EGAF00003948308 fastq.gz 19.6 GB Report
EGAF00003948309 fastq.gz 19.7 GB Report
EGAF00003948310 fastq.gz 19.3 GB Report
EGAF00003948311 fastq.gz 19.7 GB Report
EGAF00003948312 fastq.gz 17.1 GB Report
EGAF00003948313 fastq.gz 17.8 GB Report
EGAF00003948314 fastq.gz 18.6 GB Report
EGAF00003948315 fastq.gz 19.4 GB Report
EGAF00003948316 fastq.gz 19.0 GB Report
EGAF00003948317 fastq.gz 19.6 GB Report
EGAF00003948318 fastq.gz 17.0 GB Report
EGAF00003948319 fastq.gz 17.2 GB Report
EGAF00003948320 fastq.gz 15.5 GB Report
EGAF00003948321 fastq.gz 16.5 GB Report
EGAF00003948322 fastq.gz 18.0 GB Report
EGAF00003948323 fastq.gz 18.9 GB Report
EGAF00003948324 fastq.gz 12.6 GB Report
EGAF00003948325 fastq.gz 13.8 GB Report
EGAF00003948326 fastq.gz 16.7 GB Report
EGAF00003948327 fastq.gz 17.2 GB Report
EGAF00003948328 fastq.gz 16.4 GB Report
EGAF00003948329 fastq.gz 16.9 GB Report
EGAF00003948330 fastq.gz 16.7 GB Report
EGAF00003948331 fastq.gz 17.0 GB Report
EGAF00003948332 fastq.gz 14.5 GB Report
EGAF00003948333 fastq.gz 15.3 GB Report
EGAF00003948334 fastq.gz 24.6 GB Report
EGAF00003948335 fastq.gz 25.6 GB Report
EGAF00003948336 fastq.gz 19.1 GB Report
EGAF00003948337 fastq.gz 17.0 GB Report
EGAF00003948338 fastq.gz 16.2 GB Report
EGAF00003948339 fastq.gz 8.9 GB
EGAF00003948340 fastq.gz 18.2 GB Report
EGAF00003948341 fastq.gz 18.4 GB Report
EGAF00003948342 fastq.gz 41.2 GB Report
EGAF00003948343 fastq.gz 45.7 GB Report
EGAF00003948344 fastq.gz 41.8 GB Report
EGAF00003948345 fastq.gz 44.6 GB Report
EGAF00003948346 fastq.gz 39.7 GB Report
EGAF00003948347 fastq.gz 43.7 GB Report
EGAF00003948348 fastq.gz 36.9 GB Report
EGAF00003948349 fastq.gz 44.4 GB Report
EGAF00003948350 fastq.gz 35.2 GB Report
EGAF00003948351 fastq.gz 41.5 GB Report
EGAF00003948352 fastq.gz 43.2 GB Report
EGAF00003948353 fastq.gz 50.2 GB Report
EGAF00003948354 fastq.gz 40.0 GB Report
EGAF00003948355 fastq.gz 43.9 GB Report
EGAF00003948356 fastq.gz 34.0 GB Report
EGAF00003948357 fastq.gz 39.3 GB Report
EGAF00003948358 fastq.gz 35.1 GB Report
EGAF00003948359 fastq.gz 41.1 GB Report
EGAF00003948360 fastq.gz 36.8 GB Report
EGAF00003948361 fastq.gz 44.4 GB Report
EGAF00003948362 fastq.gz 36.1 GB Report
EGAF00003948363 fastq.gz 38.7 GB Report
EGAF00003948364 fastq.gz 15.9 GB Report
EGAF00003948365 fastq.gz 16.5 GB Report
EGAF00003948366 fastq.gz 16.0 GB Report
EGAF00003948367 fastq.gz 16.7 GB Report
EGAF00003948368 fastq.gz 15.3 GB Report
EGAF00003948369 fastq.gz 15.6 GB Report
EGAF00003948370 fastq.gz 41.9 GB Report
EGAF00003948371 fastq.gz 48.8 GB Report
EGAF00003948372 fastq.gz 36.3 GB Report
EGAF00003948373 fastq.gz 43.9 GB Report
EGAF00003948374 fastq.gz 36.7 GB Report
EGAF00003948375 fastq.gz 40.3 GB Report
EGAF00003948376 fastq.gz 36.6 GB Report
EGAF00003948377 fastq.gz 40.6 GB Report
EGAF00003948378 fastq.gz 16.4 GB Report
EGAF00003948379 fastq.gz 16.5 GB Report
EGAF00003948380 fastq.gz 15.7 GB Report
EGAF00003948381 fastq.gz 15.6 GB Report
EGAF00003948382 fastq.gz 15.2 GB Report
EGAF00003948383 fastq.gz 15.8 GB Report
EGAF00003948384 fastq.gz 36.1 GB Report
EGAF00003948385 fastq.gz 43.1 GB Report
EGAF00003948386 fastq.gz 19.8 GB Report
EGAF00003948387 fastq.gz 20.6 GB Report
EGAF00003948388 fastq.gz 20.3 GB Report
EGAF00003948389 fastq.gz 21.2 GB Report
EGAF00003948390 fastq.gz 17.7 GB Report
EGAF00003948391 fastq.gz 18.5 GB Report
EGAF00003948392 fastq.gz 18.6 GB Report
EGAF00003948393 fastq.gz 19.5 GB Report
EGAF00003948394 fastq.gz 17.8 GB Report
EGAF00003948395 fastq.gz 18.6 GB Report
EGAF00003948396 fastq.gz 18.4 GB Report
EGAF00003948397 fastq.gz 19.1 GB Report
EGAF00003948398 fastq.gz 37.9 GB Report
EGAF00003948399 fastq.gz 41.9 GB Report
EGAF00003948400 fastq.gz 20.0 GB Report
EGAF00003948401 fastq.gz 20.1 GB Report
EGAF00003948402 fastq.gz 17.7 GB Report
EGAF00003948403 fastq.gz 18.4 GB Report
EGAF00003948404 fastq.gz 17.7 GB Report
EGAF00003948405 fastq.gz 18.4 GB Report
EGAF00003948406 fastq.gz 18.2 GB Report
EGAF00003948407 fastq.gz 18.9 GB Report
EGAF00003948408 fastq.gz 17.9 GB Report
EGAF00003948409 fastq.gz 19.2 GB Report
EGAF00003948410 fastq.gz 14.6 GB Report
EGAF00003948411 fastq.gz 15.1 GB Report
EGAF00003948412 fastq.gz 14.5 GB Report
EGAF00003948413 fastq.gz 15.0 GB Report
EGAF00003948414 fastq.gz 14.4 GB Report
EGAF00003948415 fastq.gz 15.0 GB Report
EGAF00003948416 fastq.gz 10.3 GB Report
EGAF00003948417 fastq.gz 10.7 GB Report
EGAF00003948418 fastq.gz 16.6 GB Report
EGAF00003948419 fastq.gz 17.4 GB Report
EGAF00003948420 fastq.gz 18.5 GB Report
EGAF00003948421 fastq.gz 19.3 GB Report
EGAF00003948422 fastq.gz 18.5 GB Report
EGAF00003948423 fastq.gz 19.3 GB Report
EGAF00003948424 fastq.gz 16.4 GB Report
EGAF00003948425 fastq.gz 17.1 GB Report
EGAF00003948426 fastq.gz 18.5 GB Report
EGAF00003948427 fastq.gz 19.2 GB Report
EGAF00003948428 fastq.gz 18.8 GB Report
EGAF00003948429 fastq.gz 19.5 GB Report
EGAF00003948430 fastq.gz 12.9 GB Report
EGAF00003948431 fastq.gz 13.0 GB Report
EGAF00003948432 fastq.gz 13.6 GB Report
EGAF00003948433 fastq.gz 13.3 GB Report
EGAF00003948434 fastq.gz 14.1 GB Report
EGAF00003948435 fastq.gz 13.5 GB Report
EGAF00003948436 fastq.gz 17.1 GB Report
EGAF00003948437 fastq.gz 17.9 GB Report
EGAF00003948438 fastq.gz 17.7 GB Report
EGAF00003948439 fastq.gz 18.0 GB Report
EGAF00003948440 fastq.gz 17.9 GB Report
EGAF00003948441 fastq.gz 18.6 GB Report
EGAF00003948442 fastq.gz 18.3 GB Report
EGAF00003948443 fastq.gz 19.0 GB Report
EGAF00003948444 fastq.gz 42.7 GB Report
EGAF00003948445 fastq.gz 46.1 GB Report
EGAF00003948446 fastq.gz 9.8 MB
EGAF00003948447 fastq.gz 45.3 GB Report
EGAF00003948448 fastq.gz 40.4 GB Report
EGAF00003948449 fastq.gz 45.5 GB Report
EGAF00003948450 fastq.gz 37.1 GB Report
EGAF00003948451 fastq.gz 41.0 GB Report
EGAF00003948452 fastq.gz 40.7 GB Report
EGAF00003948453 fastq.gz 46.1 GB Report
EGAF00003948454 fastq.gz 41.4 GB Report
EGAF00003948455 fastq.gz 48.2 GB Report
EGAF00003948456 fastq.gz 40.8 GB Report
EGAF00003948457 fastq.gz 46.0 GB Report
EGAF00003948458 fastq.gz 39.4 GB Report
EGAF00003948459 fastq.gz 43.5 GB Report
EGAF00003948460 fastq.gz 15.8 GB Report
EGAF00003948461 fastq.gz 16.4 GB Report
EGAF00003948462 fastq.gz 15.3 GB Report
EGAF00003948463 fastq.gz 16.1 GB Report
EGAF00003948464 fastq.gz 15.7 GB Report
EGAF00003948465 fastq.gz 16.4 GB Report
EGAF00003948466 fastq.gz 42.7 GB Report
EGAF00003948467 fastq.gz 50.2 GB Report
EGAF00003948468 fastq.gz 36.6 GB Report
EGAF00003948469 fastq.gz 43.3 GB Report
EGAF00003948470 fastq.gz 37.3 GB Report
EGAF00003948471 fastq.gz 41.5 GB Report
EGAF00003948472 fastq.gz 36.1 GB Report
EGAF00003948473 fastq.gz 40.4 GB Report
EGAF00003948474 fastq.gz 37.3 GB Report
EGAF00003948475 fastq.gz 41.6 GB Report
220 Files (5.3 TB)