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Whole genome sequencing data for Molecular Characterization of ETMRs

This dataset contains whole genome sequencing data from 59 samples. WGS libraries were prepared using the Illumina TruSeq Nano DNA LT Library Prep or TruSeq Nano DNA HT Library Prep Kit following the manufacturer’s instructions. In brief, 100 ng of genomic DNA was fragmented to approximately 350 bp using a Covaris ultrasonicator (Covaris). The fragmented DNA was then end-repaired, size-selected using magnetic beads, extended with an ‘A’ base on the 3′ end and ligated with TruSeq paired-end indexing adapters. Up to four lanes per sample have been sequenced resulting in 222 Fastq files (paired end).

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Data Access Committee for DKFZ DACO B06x

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek ( Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003256 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003948256 fastq.gz 17.4 GB
EGAF00003948257 fastq.gz 17.9 GB
EGAF00003948258 fastq.gz 21.0 GB
EGAF00003948259 fastq.gz 22.0 GB
EGAF00003948260 fastq.gz 18.8 GB
EGAF00003948261 fastq.gz 19.7 GB
EGAF00003948262 fastq.gz 19.0 GB
EGAF00003948263 fastq.gz 19.3 GB
EGAF00003948264 fastq.gz 18.7 GB
EGAF00003948265 fastq.gz 19.7 GB
EGAF00003948266 fastq.gz 19.3 GB
EGAF00003948267 fastq.gz 19.9 GB
EGAF00003948268 fastq.gz 19.8 GB
EGAF00003948269 fastq.gz 20.4 GB
EGAF00003948270 fastq.gz 19.5 GB
EGAF00003948271 fastq.gz 20.1 GB
EGAF00003948272 fastq.gz 36.2 GB
EGAF00003948273 fastq.gz 43.1 GB
EGAF00003948274 fastq.gz 14.0 GB
EGAF00003948275 fastq.gz 14.6 GB
EGAF00003948276 fastq.gz 18.0 GB
EGAF00003948277 fastq.gz 18.5 GB
EGAF00003948278 fastq.gz 18.1 GB
EGAF00003948279 fastq.gz 18.8 GB
EGAF00003948280 fastq.gz 20.7 GB
EGAF00003948281 fastq.gz 21.5 GB
EGAF00003948282 fastq.gz 19.7 GB
EGAF00003948283 fastq.gz 20.5 GB
EGAF00003948284 fastq.gz 19.9 GB
EGAF00003948285 fastq.gz 20.7 GB
EGAF00003948286 fastq.gz 14.0 GB
EGAF00003948287 fastq.gz 15.2 GB
EGAF00003948288 fastq.gz 14.0 GB
EGAF00003948289 fastq.gz 15.2 GB
EGAF00003948290 fastq.gz 4.1 GB
EGAF00003948291 fastq.gz 4.4 GB
EGAF00003948292 fastq.gz 4.0 GB
EGAF00003948293 fastq.gz 4.3 GB
EGAF00003948294 fastq.gz 39.7 GB
EGAF00003948295 fastq.gz 41.9 GB
EGAF00003948296 fastq.gz 14.6 GB
EGAF00003948297 fastq.gz 15.7 GB
EGAF00003948298 fastq.gz 14.6 GB
EGAF00003948299 fastq.gz 15.7 GB
EGAF00003948300 fastq.gz 18.0 GB
EGAF00003948301 fastq.gz 18.4 GB
EGAF00003948302 fastq.gz 19.4 GB
EGAF00003948303 fastq.gz 20.1 GB
EGAF00003948304 fastq.gz 19.4 GB
EGAF00003948305 fastq.gz 20.0 GB
EGAF00003948306 fastq.gz 19.6 GB
EGAF00003948307 fastq.gz 20.2 GB
EGAF00003948308 fastq.gz 19.6 GB
EGAF00003948309 fastq.gz 19.7 GB
EGAF00003948310 fastq.gz 19.3 GB
EGAF00003948311 fastq.gz 19.7 GB
EGAF00003948312 fastq.gz 17.1 GB
EGAF00003948313 fastq.gz 17.8 GB
EGAF00003948314 fastq.gz 18.6 GB
EGAF00003948315 fastq.gz 19.4 GB
EGAF00003948316 fastq.gz 19.0 GB
EGAF00003948317 fastq.gz 19.6 GB
EGAF00003948318 fastq.gz 17.0 GB
EGAF00003948319 fastq.gz 17.2 GB
EGAF00003948320 fastq.gz 15.5 GB
EGAF00003948321 fastq.gz 16.5 GB
EGAF00003948322 fastq.gz 18.0 GB
EGAF00003948323 fastq.gz 18.9 GB
EGAF00003948324 fastq.gz 12.6 GB
EGAF00003948325 fastq.gz 13.8 GB
EGAF00003948326 fastq.gz 16.7 GB
EGAF00003948327 fastq.gz 17.2 GB
EGAF00003948328 fastq.gz 16.4 GB
EGAF00003948329 fastq.gz 16.9 GB
EGAF00003948330 fastq.gz 16.7 GB
EGAF00003948331 fastq.gz 17.0 GB
EGAF00003948332 fastq.gz 14.5 GB
EGAF00003948333 fastq.gz 15.3 GB
EGAF00003948334 fastq.gz 24.6 GB
EGAF00003948335 fastq.gz 25.6 GB
EGAF00003948336 fastq.gz 19.1 GB
EGAF00003948337 fastq.gz 17.0 GB
EGAF00003948338 fastq.gz 16.2 GB
EGAF00003948339 fastq.gz 8.9 GB
EGAF00003948340 fastq.gz 18.2 GB
EGAF00003948341 fastq.gz 18.4 GB
EGAF00003948342 fastq.gz 41.2 GB
EGAF00003948343 fastq.gz 45.7 GB
EGAF00003948344 fastq.gz 41.8 GB
EGAF00003948345 fastq.gz 44.6 GB
EGAF00003948346 fastq.gz 39.7 GB
EGAF00003948347 fastq.gz 43.7 GB
EGAF00003948348 fastq.gz 36.9 GB
EGAF00003948349 fastq.gz 44.4 GB
EGAF00003948350 fastq.gz 35.2 GB
EGAF00003948351 fastq.gz 41.5 GB
EGAF00003948352 fastq.gz 43.2 GB
EGAF00003948353 fastq.gz 50.2 GB
EGAF00003948354 fastq.gz 40.0 GB
EGAF00003948355 fastq.gz 43.9 GB
EGAF00003948356 fastq.gz 34.0 GB
EGAF00003948357 fastq.gz 39.3 GB
EGAF00003948358 fastq.gz 35.1 GB
EGAF00003948359 fastq.gz 41.1 GB
EGAF00003948360 fastq.gz 36.8 GB
EGAF00003948361 fastq.gz 44.4 GB
EGAF00003948362 fastq.gz 36.1 GB
EGAF00003948363 fastq.gz 38.7 GB
EGAF00003948364 fastq.gz 15.9 GB
EGAF00003948365 fastq.gz 16.5 GB
EGAF00003948366 fastq.gz 16.0 GB
EGAF00003948367 fastq.gz 16.7 GB
EGAF00003948368 fastq.gz 15.3 GB
EGAF00003948369 fastq.gz 15.6 GB
EGAF00003948370 fastq.gz 41.9 GB
EGAF00003948371 fastq.gz 48.8 GB
EGAF00003948372 fastq.gz 36.3 GB
EGAF00003948373 fastq.gz 43.9 GB
EGAF00003948374 fastq.gz 36.7 GB
EGAF00003948375 fastq.gz 40.3 GB
EGAF00003948376 fastq.gz 36.6 GB
EGAF00003948377 fastq.gz 40.6 GB
EGAF00003948378 fastq.gz 16.4 GB
EGAF00003948379 fastq.gz 16.5 GB
EGAF00003948380 fastq.gz 15.7 GB
EGAF00003948381 fastq.gz 15.6 GB
EGAF00003948382 fastq.gz 15.2 GB
EGAF00003948383 fastq.gz 15.8 GB
EGAF00003948384 fastq.gz 36.1 GB
EGAF00003948385 fastq.gz 43.1 GB
EGAF00003948386 fastq.gz 19.8 GB
EGAF00003948387 fastq.gz 20.6 GB
EGAF00003948388 fastq.gz 20.3 GB
EGAF00003948389 fastq.gz 21.2 GB
EGAF00003948390 fastq.gz 17.7 GB
EGAF00003948391 fastq.gz 18.5 GB
EGAF00003948392 fastq.gz 18.6 GB
EGAF00003948393 fastq.gz 19.5 GB
EGAF00003948394 fastq.gz 17.8 GB
EGAF00003948395 fastq.gz 18.6 GB
EGAF00003948396 fastq.gz 18.4 GB
EGAF00003948397 fastq.gz 19.1 GB
EGAF00003948398 fastq.gz 37.9 GB
EGAF00003948399 fastq.gz 41.9 GB
EGAF00003948400 fastq.gz 20.0 GB
EGAF00003948401 fastq.gz 20.1 GB
EGAF00003948402 fastq.gz 17.7 GB
EGAF00003948403 fastq.gz 18.4 GB
EGAF00003948404 fastq.gz 17.7 GB
EGAF00003948405 fastq.gz 18.4 GB
EGAF00003948406 fastq.gz 18.2 GB
EGAF00003948407 fastq.gz 18.9 GB
EGAF00003948408 fastq.gz 17.9 GB
EGAF00003948409 fastq.gz 19.2 GB
EGAF00003948410 fastq.gz 14.6 GB
EGAF00003948411 fastq.gz 15.1 GB
EGAF00003948412 fastq.gz 14.5 GB
EGAF00003948413 fastq.gz 15.0 GB
EGAF00003948414 fastq.gz 14.4 GB
EGAF00003948415 fastq.gz 15.0 GB
EGAF00003948416 fastq.gz 10.3 GB
EGAF00003948417 fastq.gz 10.7 GB
EGAF00003948418 fastq.gz 16.6 GB
EGAF00003948419 fastq.gz 17.4 GB
EGAF00003948420 fastq.gz 18.5 GB
EGAF00003948421 fastq.gz 19.3 GB
EGAF00003948422 fastq.gz 18.5 GB
EGAF00003948423 fastq.gz 19.3 GB
EGAF00003948424 fastq.gz 16.4 GB
EGAF00003948425 fastq.gz 17.1 GB
EGAF00003948426 fastq.gz 18.5 GB
EGAF00003948427 fastq.gz 19.2 GB
EGAF00003948428 fastq.gz 18.8 GB
EGAF00003948429 fastq.gz 19.5 GB
EGAF00003948430 fastq.gz 12.9 GB
EGAF00003948431 fastq.gz 13.0 GB
EGAF00003948432 fastq.gz 13.6 GB
EGAF00003948433 fastq.gz 13.3 GB
EGAF00003948434 fastq.gz 14.1 GB
EGAF00003948435 fastq.gz 13.5 GB
EGAF00003948436 fastq.gz 17.1 GB
EGAF00003948437 fastq.gz 17.9 GB
EGAF00003948438 fastq.gz 17.7 GB
EGAF00003948439 fastq.gz 18.0 GB
EGAF00003948440 fastq.gz 17.9 GB
EGAF00003948441 fastq.gz 18.6 GB
EGAF00003948442 fastq.gz 18.3 GB
EGAF00003948443 fastq.gz 19.0 GB
EGAF00003948444 fastq.gz 42.7 GB
EGAF00003948445 fastq.gz 46.1 GB
EGAF00003948446 fastq.gz 9.8 MB
EGAF00003948447 fastq.gz 45.3 GB
EGAF00003948448 fastq.gz 40.4 GB
EGAF00003948449 fastq.gz 45.5 GB
EGAF00003948450 fastq.gz 37.1 GB
EGAF00003948451 fastq.gz 41.0 GB
EGAF00003948452 fastq.gz 40.7 GB
EGAF00003948453 fastq.gz 46.1 GB
EGAF00003948454 fastq.gz 41.4 GB
EGAF00003948455 fastq.gz 48.2 GB
EGAF00003948456 fastq.gz 40.8 GB
EGAF00003948457 fastq.gz 46.0 GB
EGAF00003948458 fastq.gz 39.4 GB
EGAF00003948459 fastq.gz 43.5 GB
EGAF00003948460 fastq.gz 15.8 GB
EGAF00003948461 fastq.gz 16.4 GB
EGAF00003948462 fastq.gz 15.3 GB
EGAF00003948463 fastq.gz 16.1 GB
EGAF00003948464 fastq.gz 15.7 GB
EGAF00003948465 fastq.gz 16.4 GB
EGAF00003948466 fastq.gz 42.7 GB
EGAF00003948467 fastq.gz 50.2 GB
EGAF00003948468 fastq.gz 36.6 GB
EGAF00003948469 fastq.gz 43.3 GB
EGAF00003948470 fastq.gz 37.3 GB
EGAF00003948471 fastq.gz 41.5 GB
EGAF00003948472 fastq.gz 36.1 GB
EGAF00003948473 fastq.gz 40.4 GB
EGAF00003948474 fastq.gz 37.3 GB
EGAF00003948475 fastq.gz 41.6 GB
220 Files (5.3 TB)