Dataset

Whole genome sequencing data for Molecular Characterization of ETMRs

Dataset ID Technology Samples
EGAD00001006211 HiSeq X Ten,Illumina HiSeq 2000 59

Dataset Description

This dataset contains whole genome sequencing data from 59 samples.
WGS libraries were prepared using the Illumina TruSeq Nano DNA
LT Library Prep or TruSeq Nano DNA HT Library Prep Kit following
the manufacturer’s instructions. In brief, 100 ng of genomic DNA was
fragmented to approximately 350 bp using a Covaris ultrasonicator
(Covaris). The fragmented DNA was then end-repaired, size-selected
using magnetic beads, extended with an ‘A’ base on the 3′ end and ligated
with TruSeq paired-end indexing adapters. Up to four lanes per sample have
been sequenced resulting in 222 Fastq files (paired end).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)
Contact person: DACO B060x
Email: daco-dkfz-b06x [at] dkfz-heidelberg [dot] de
More details: EGAC00001001626

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