Epigenetic subtypes of neuroblastoma - RNAseq

In the absence of recurrent gene mutations, evidence accumulates that epigenetic deregulation plays a prominent role in neuroblastoma biology. Here we provide RNAseq profiles in 71 primary and relapse neuroblastoma samples.

71 samples
DAC: EGAC00001001670
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

Request Access

Description: Transfer of patient sequencing data requires a data transfer agreement to ensure that the regulations of the data protection law are fulfilled.

INFORM registry INFORM – INdividualized Therapy FOr Relapsed Malignancies in Childhood Commitment to data privacy protection for the usage of molecular data in academic research I undertake to use the sequencial data of patient IXX-XXX, obtained in the context of the INFORM register, exclusively for academic research purposes, like stated in the patient informed consent. The research activities comprise examinations of molecular, genetic, immunologic and other characteristics of the tumor disease, as well as the development of new therapeutic options or diagnostic methods where appropriate. I presented the research project „xxx“ to the heads of the GPOH study groups and/or National Coordinators concerned and to the INFORM Data Access Committee. Further, I received professional legal advice or a positive vote by the ethic committee, respectively. Before publication, the INFORM coordinators will be asked for their approval. The manuscript will be presented to them for review at least 4 weeks before submission. All applicable data protection laws are respected. Genetic data will be encoded and stored separately from clinical data. I ensure that these data at our institution are protected against access by any third parties. The data will not be passed on to unauthorized third parties. Equally, the codes necessary for re-identification will not be passed on to unauthorized third parties. No attempt is made to identify the respective patient via their genetic data. Future publications will not allow any conclusion regarding the person’s identity. ______________ ____________________ __________________________ Date Name Signature ___________________ Institutional stamp Please send scan via email and send the original signed document by post to: INFORM Trial Office, KiTZ Clinical Trial Unit / Ruth Witt, Im Neuenheimer Feld 130/3, 69120 Heidelberg, Germany Neuroblastoma Study data access policy Description: Transfer of patient sequencing data requires a data transfer agreement to ensure that the regulations of the data protection law are fulfilled. Policy: “I undertake to use the sequencing data exclusively for academic research purposes, like stated in the patient informed consent. The research activities comprise examinations of molecular, genetic, immunologic and other characteristics of the tumor disease, as well as the development of new therapeutic options or diagnostic methods where appropriate. I received professional legal advice or a positive vote by the ethic committee, respectively. All applicable data protection laws are respected. Genetic data will be encoded and stored separately from clinical data. I ensure that these data at our institution are protected against access by any third parties. The data will not be passed on to unauthorized third parties. Equally, the codes necessary for re-identification will not be passed on to unauthorized third parties. No attempt is made to identify the respective patient via their genetic data. Future publications will not allow any conclusion regarding the person’s identity.” ____________ ____________________ __________________________ Date Name Signature ___________________ Institutional stamp Please send scan via email and send the original signed document by post to: Department Neuroblastoma Genomics, German Cancer Research Center, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001004552	Super enhancers define regulatory subtypes and cell identity in neuroblastoma - RNA-seq	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00004173744	fastq.gz	4.5 GB
EGAF00004173745	fastq.gz	4.7 GB
EGAF00004173746	fastq.gz	4.5 GB
EGAF00004173747	fastq.gz	4.8 GB
EGAF00004173748	fastq.gz	3.9 GB
EGAF00004173749	fastq.gz	4.3 GB
EGAF00004173750	fastq.gz	3.5 GB
EGAF00004173751	fastq.gz	4.2 GB
EGAF00004173752	fastq.gz	3.1 GB
EGAF00004173753	fastq.gz	3.3 GB
EGAF00004173754	fastq.gz	3.1 GB
EGAF00004173755	fastq.gz	3.3 GB
EGAF00004173756	fastq.gz	4.5 GB
EGAF00004173757	fastq.gz	4.7 GB
EGAF00004173758	fastq.gz	4.4 GB
EGAF00004173759	fastq.gz	4.7 GB
EGAF00004173760	fastq.gz	5.0 GB
EGAF00004173761	fastq.gz	5.3 GB
EGAF00004173762	fastq.gz	5.1 GB
EGAF00004173763	fastq.gz	5.3 GB
EGAF00004173764	fastq.gz	4.6 GB
EGAF00004173765	fastq.gz	4.8 GB
EGAF00004173766	fastq.gz	4.7 GB
EGAF00004173767	fastq.gz	4.9 GB
EGAF00004173768	fastq.gz	4.7 GB
EGAF00004173769	fastq.gz	4.9 GB
EGAF00004173770	fastq.gz	4.7 GB
EGAF00004173771	fastq.gz	4.9 GB
EGAF00004173772	fastq.gz	5.1 GB
EGAF00004173773	fastq.gz	5.4 GB
EGAF00004173774	fastq.gz	5.0 GB
EGAF00004173775	fastq.gz	5.2 GB
EGAF00004173776	fastq.gz	3.9 GB
EGAF00004173777	fastq.gz	4.1 GB
EGAF00004173778	fastq.gz	3.9 GB
EGAF00004173779	fastq.gz	4.1 GB
EGAF00004173780	fastq.gz	5.4 GB
EGAF00004173781	fastq.gz	5.5 GB
EGAF00004173782	fastq.gz	5.3 GB
EGAF00004173783	fastq.gz	5.4 GB
EGAF00004173784	fastq.gz	4.9 GB
EGAF00004173785	fastq.gz	5.1 GB
EGAF00004173786	fastq.gz	4.8 GB
EGAF00004173787	fastq.gz	5.0 GB
EGAF00004173788	fastq.gz	4.8 GB
EGAF00004173789	fastq.gz	5.0 GB
EGAF00004173790	fastq.gz	5.0 GB
EGAF00004173791	fastq.gz	5.2 GB
EGAF00004173792	fastq.gz	4.1 GB
EGAF00004173793	fastq.gz	4.3 GB
EGAF00004173794	fastq.gz	4.2 GB
EGAF00004173795	fastq.gz	4.4 GB
EGAF00004173796	fastq.gz	3.5 GB
EGAF00004173797	fastq.gz	3.7 GB
EGAF00004173798	fastq.gz	3.5 GB
EGAF00004173799	fastq.gz	3.7 GB
EGAF00004173800	fastq.gz	3.6 GB
EGAF00004173801	fastq.gz	3.8 GB
EGAF00004173802	fastq.gz	3.7 GB
EGAF00004173803	fastq.gz	3.8 GB
EGAF00004173804	fastq.gz	4.4 GB
EGAF00004173805	fastq.gz	4.6 GB
EGAF00004173806	fastq.gz	4.3 GB
EGAF00004173807	fastq.gz	4.6 GB
EGAF00004173808	fastq.gz	3.9 GB
EGAF00004173809	fastq.gz	4.1 GB
EGAF00004173810	fastq.gz	4.0 GB
EGAF00004173811	fastq.gz	4.2 GB
EGAF00004173812	fastq.gz	3.7 GB
EGAF00004173813	fastq.gz	3.8 GB
EGAF00004173814	fastq.gz	3.7 GB
EGAF00004173815	fastq.gz	3.8 GB
EGAF00004173816	fastq.gz	4.3 GB
EGAF00004173817	fastq.gz	4.5 GB
EGAF00004173818	fastq.gz	4.3 GB
EGAF00004173819	fastq.gz	4.5 GB
EGAF00004173820	fastq.gz	5.3 GB
EGAF00004173821	fastq.gz	5.7 GB
EGAF00004173822	fastq.gz	4.4 GB
EGAF00004173823	fastq.gz	4.6 GB
EGAF00004173824	fastq.gz	1.7 GB
EGAF00004173825	fastq.gz	1.8 GB
EGAF00004173826	fastq.gz	1.7 GB
EGAF00004173827	fastq.gz	1.8 GB
EGAF00004173828	fastq.gz	1.7 GB
EGAF00004173829	fastq.gz	1.8 GB
EGAF00004173830	fastq.gz	1.7 GB
EGAF00004173831	fastq.gz	1.8 GB
EGAF00004173832	fastq.gz	1.7 GB
EGAF00004173833	fastq.gz	1.8 GB
EGAF00004173834	fastq.gz	1.6 GB
EGAF00004173835	fastq.gz	1.7 GB
EGAF00004173836	fastq.gz	1.6 GB
EGAF00004173837	fastq.gz	1.7 GB
EGAF00004173838	fastq.gz	1.6 GB
EGAF00004173839	fastq.gz	1.7 GB
EGAF00004173840	fastq.gz	1.6 GB
EGAF00004173841	fastq.gz	1.7 GB
EGAF00004173842	fastq.gz	1.6 GB
EGAF00004173843	fastq.gz	1.7 GB
EGAF00004173844	fastq.gz	1.5 GB
EGAF00004173845	fastq.gz	1.6 GB
EGAF00004173846	fastq.gz	1.4 GB
EGAF00004173847	fastq.gz	1.5 GB
EGAF00004173848	fastq.gz	1.4 GB
EGAF00004173849	fastq.gz	1.5 GB
EGAF00004173850	fastq.gz	1.4 GB
EGAF00004173851	fastq.gz	1.6 GB
EGAF00004173852	fastq.gz	1.4 GB
EGAF00004173853	fastq.gz	1.5 GB
EGAF00004173854	fastq.gz	1.8 GB
EGAF00004173855	fastq.gz	1.9 GB
EGAF00004173856	fastq.gz	1.7 GB
EGAF00004173857	fastq.gz	1.9 GB
EGAF00004173858	fastq.gz	1.7 GB
EGAF00004173859	fastq.gz	1.9 GB
EGAF00004173860	fastq.gz	1.7 GB
EGAF00004173861	fastq.gz	1.9 GB
EGAF00004173862	fastq.gz	1.7 GB
EGAF00004173863	fastq.gz	1.8 GB
EGAF00004173864	fastq.gz	1.7 GB
EGAF00004173865	fastq.gz	1.8 GB
EGAF00004173866	fastq.gz	1.7 GB
EGAF00004173867	fastq.gz	1.8 GB
EGAF00004173868	fastq.gz	1.7 GB
EGAF00004173869	fastq.gz	1.8 GB
EGAF00004173870	fastq.gz	1.7 GB
EGAF00004173871	fastq.gz	1.8 GB
EGAF00004173872	fastq.gz	1.7 GB
EGAF00004173873	fastq.gz	1.8 GB
EGAF00004173874	fastq.gz	5.3 GB
EGAF00004173875	fastq.gz	5.5 GB
EGAF00004173876	fastq.gz	5.2 GB
EGAF00004173877	fastq.gz	5.4 GB
EGAF00004173878	fastq.gz	1.3 GB
EGAF00004173879	fastq.gz	1.4 GB
EGAF00004173880	fastq.gz	1.3 GB
EGAF00004173881	fastq.gz	1.4 GB
EGAF00004173882	fastq.gz	1.3 GB
EGAF00004173883	fastq.gz	1.3 GB
EGAF00004173884	fastq.gz	1.3 GB
EGAF00004173885	fastq.gz	1.4 GB
EGAF00004173886	fastq.gz	1.3 GB
EGAF00004173887	fastq.gz	1.3 GB
EGAF00004173888	fastq.gz	6.7 GB
EGAF00004173889	fastq.gz	7.1 GB
EGAF00004173890	fastq.gz	6.6 GB
EGAF00004173891	fastq.gz	7.0 GB
EGAF00004173892	fastq.gz	6.3 GB
EGAF00004173893	fastq.gz	6.7 GB
EGAF00004173894	fastq.gz	6.2 GB
EGAF00004173895	fastq.gz	6.5 GB
EGAF00004173896	fastq.gz	1.7 GB
EGAF00004173897	fastq.gz	1.7 GB
EGAF00004173898	fastq.gz	1.7 GB
EGAF00004173899	fastq.gz	1.7 GB
EGAF00004173900	fastq.gz	1.6 GB
EGAF00004173901	fastq.gz	1.7 GB
EGAF00004173902	fastq.gz	1.7 GB
EGAF00004173903	fastq.gz	1.7 GB
EGAF00004173904	fastq.gz	1.6 GB
EGAF00004173905	fastq.gz	1.7 GB
EGAF00004173906	fastq.gz	4.7 GB
EGAF00004173907	fastq.gz	5.0 GB
EGAF00004173908	fastq.gz	4.6 GB
EGAF00004173909	fastq.gz	5.0 GB
EGAF00004173910	fastq.gz	4.6 GB
EGAF00004173911	fastq.gz	4.9 GB
EGAF00004173912	fastq.gz	4.7 GB
EGAF00004173913	fastq.gz	5.0 GB
EGAF00004173914	fastq.gz	4.6 GB
EGAF00004173915	fastq.gz	4.9 GB
EGAF00004173916	fastq.gz	1.5 GB
EGAF00004173917	fastq.gz	1.6 GB
EGAF00004173918	fastq.gz	1.5 GB
EGAF00004173919	fastq.gz	1.5 GB
EGAF00004173920	fastq.gz	1.4 GB
EGAF00004173921	fastq.gz	1.5 GB
EGAF00004173922	fastq.gz	1.5 GB
EGAF00004173923	fastq.gz	1.6 GB
EGAF00004173924	fastq.gz	1.4 GB
EGAF00004173925	fastq.gz	1.5 GB
EGAF00004173926	fastq.gz	1.7 GB
EGAF00004173927	fastq.gz	1.8 GB
EGAF00004173928	fastq.gz	1.7 GB
EGAF00004173929	fastq.gz	1.7 GB
EGAF00004173930	fastq.gz	1.6 GB
EGAF00004173931	fastq.gz	1.7 GB
EGAF00004173932	fastq.gz	1.7 GB
EGAF00004173933	fastq.gz	1.8 GB
EGAF00004173934	fastq.gz	1.6 GB
EGAF00004173935	fastq.gz	1.7 GB
EGAF00004173936	fastq.gz	8.1 GB
EGAF00004173937	fastq.gz	8.5 GB
EGAF00004173938	fastq.gz	9.8 GB
EGAF00004173939	fastq.gz	10.5 GB
EGAF00004173940	fastq.gz	6.0 GB
EGAF00004173941	fastq.gz	6.4 GB
EGAF00004173942	fastq.gz	5.8 GB
EGAF00004173943	fastq.gz	6.1 GB
EGAF00004173944	fastq.gz	5.5 GB
EGAF00004173945	fastq.gz	5.8 GB
EGAF00004173946	fastq.gz	5.3 GB
EGAF00004173947	fastq.gz	5.6 GB
EGAF00004173948	fastq.gz	8.6 GB
EGAF00004173949	fastq.gz	9.1 GB
EGAF00004173950	fastq.gz	7.0 GB
EGAF00004173951	fastq.gz	7.5 GB
EGAF00004173952	fastq.gz	7.0 GB
EGAF00004173953	fastq.gz	7.4 GB
EGAF00004173954	fastq.gz	10.6 GB
EGAF00004173955	fastq.gz	11.1 GB
EGAF00004173956	fastq.gz	2.2 GB
EGAF00004173957	fastq.gz	2.3 GB
EGAF00004173958	fastq.gz	2.1 GB
EGAF00004173959	fastq.gz	2.2 GB
EGAF00004173960	fastq.gz	1.9 GB
EGAF00004173961	fastq.gz	2.0 GB
EGAF00004173962	fastq.gz	2.2 GB
EGAF00004173963	fastq.gz	2.3 GB
EGAF00004173964	fastq.gz	2.1 GB
EGAF00004173965	fastq.gz	2.3 GB
EGAF00004173966	fastq.gz	1.7 GB
EGAF00004173967	fastq.gz	1.8 GB
EGAF00004173968	fastq.gz	2.5 GB
EGAF00004173969	fastq.gz	2.3 GB
EGAF00004173970	fastq.gz	2.0 GB
EGAF00004173971	fastq.gz	2.1 GB
EGAF00004173972	fastq.gz	2.6 GB
EGAF00004173973	fastq.gz	2.6 GB
EGAF00004173974	fastq.gz	5.8 GB
EGAF00004173975	fastq.gz	6.2 GB
EGAF00004173976	fastq.gz	9.7 GB
EGAF00004173977	fastq.gz	10.9 GB
EGAF00004173978	fastq.gz	9.4 GB
EGAF00004173979	fastq.gz	10.5 GB
EGAF00004173980	fastq.gz	9.2 GB
EGAF00004173981	fastq.gz	10.4 GB
EGAF00004173982	fastq.gz	9.8 GB
EGAF00004173983	fastq.gz	11.1 GB
EGAF00004173984	fastq.gz	9.3 GB
EGAF00004173985	fastq.gz	9.6 GB
EGAF00004173986	fastq.gz	8.5 GB
EGAF00004173987	fastq.gz	8.9 GB
EGAF00004173988	fastq.gz	19.1 GB
EGAF00004173989	fastq.gz	20.5 GB
EGAF00004173990	fastq.gz	8.8 GB
EGAF00004173991	fastq.gz	9.0 GB
EGAF00004173992	fastq.gz	9.1 GB
EGAF00004173993	fastq.gz	9.5 GB
EGAF00004173994	fastq.gz	21.8 GB
EGAF00004173995	fastq.gz	21.2 GB
EGAF00004173996	fastq.gz	5.1 GB
EGAF00004173997	fastq.gz	5.5 GB
EGAF00004173998	fastq.gz	9.5 GB
EGAF00004173999	fastq.gz	10.1 GB
EGAF00004174000	fastq.gz	9.3 GB
EGAF00004174001	fastq.gz	10.1 GB
EGAF00004174002	fastq.gz	7.4 GB
EGAF00004174003	fastq.gz	8.1 GB
EGAF00004174004	fastq.gz	7.8 GB
EGAF00004174005	fastq.gz	8.9 GB
EGAF00004174006	fastq.gz	18.6 GB
EGAF00004174007	fastq.gz	21.5 GB
EGAF00004174008	fastq.gz	20.4 GB
EGAF00004174009	fastq.gz	22.6 GB
EGAF00004174010	fastq.gz	20.9 GB
EGAF00004174011	fastq.gz	23.0 GB
EGAF00004174012	fastq.gz	19.7 GB
EGAF00004174013	fastq.gz	23.3 GB
EGAF00004174014	fastq.gz	19.5 GB
EGAF00004174015	fastq.gz	22.2 GB
EGAF00004174016	fastq.gz	20.2 GB
EGAF00004174017	fastq.gz	23.0 GB
EGAF00004174018	fastq.gz	3.9 GB
EGAF00004174019	fastq.gz	3.7 GB
EGAF00004174020	fastq.gz	4.8 GB
EGAF00004174021	fastq.gz	4.6 GB
EGAF00004174022	fastq.gz	4.1 GB
EGAF00004174023	fastq.gz	3.9 GB
EGAF00004174024	fastq.gz	4.8 GB
EGAF00004174025	fastq.gz	4.7 GB
EGAF00004174026	fastq.gz	4.6 GB
EGAF00004174027	fastq.gz	4.4 GB
EGAF00004174028	fastq.gz	4.6 GB
EGAF00004174029	fastq.gz	4.4 GB
EGAF00004174030	fastq.gz	5.4 GB
EGAF00004174031	fastq.gz	5.2 GB
EGAF00004174032	fastq.gz	4.5 GB
EGAF00004174033	fastq.gz	4.3 GB
290 Files (1.5 TB)