About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Shallow whole genome sequencing from plasma DNA of BC, CRC and NSCLC patients

This is the raw data obtained from shallow whole-genome sequencing of plasma DNA (plasma-Seq) for calling of somatic copy number alterations as well as focal amplifications and deletions from patients with breast, colorectal and non-small cell lung cancer.

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DUO:0000007
version: 2019-01-07

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0005575

Whole-genome sequencing cfDNA

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the study EGAS00001003206 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004383 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004174280 fastq.gz 467.1 MB Report
EGAF00004174281 fastq.gz 450.8 MB Report
EGAF00004174282 fastq.gz 345.3 MB Report
EGAF00004174283 fastq.gz 343.0 MB Report
EGAF00004174284 fastq.gz 254.7 MB Report
EGAF00004174285 fastq.gz 306.7 MB Report
EGAF00004174286 fastq.gz 231.8 MB Report
EGAF00004174287 fastq.gz 575.2 MB Report
EGAF00004174288 fastq.gz 324.1 MB Report
EGAF00004174289 fastq.gz 332.4 MB Report
EGAF00004174290 fastq.gz 449.3 MB Report
EGAF00004174291 fastq.gz 268.0 MB Report
EGAF00004174292 fastq.gz 444.9 MB Report
EGAF00004174293 fastq.gz 902.7 MB Report
EGAF00004174294 fastq.gz 469.9 MB Report
EGAF00004174295 fastq.gz 175.8 MB
EGAF00004174296 fastq.gz 271.3 MB Report
EGAF00004174297 fastq.gz 500.5 MB Report
EGAF00004174298 fastq.gz 174.0 MB
EGAF00004174299 fastq.gz 420.0 MB Report
EGAF00004174300 fastq.gz 469.6 MB Report
EGAF00004174301 fastq.gz 199.6 MB
EGAF00004174302 fastq.gz 221.6 MB
EGAF00004174303 fastq.gz 261.1 MB Report
EGAF00004174304 fastq.gz 375.6 MB Report
EGAF00004174305 fastq.gz 332.3 MB Report
EGAF00004174306 fastq.gz 200.4 MB Report
EGAF00004174307 fastq.gz 359.5 MB Report
EGAF00004174308 fastq.gz 132.6 MB Report
EGAF00004174309 fastq.gz 158.2 MB Report
EGAF00004174310 fastq.gz 141.0 MB Report
EGAF00004174311 fastq.gz 72.9 MB Report
EGAF00004174312 fastq.gz 115.1 MB Report
EGAF00004174313 fastq.gz 116.5 MB Report
EGAF00004174314 fastq.gz 192.2 MB Report
EGAF00004174315 fastq.gz 222.9 MB Report
EGAF00004174316 fastq.gz 173.3 MB Report
EGAF00004174317 fastq.gz 99.6 MB Report
EGAF00004174318 fastq.gz 156.3 MB Report
EGAF00004174319 fastq.gz 101.2 MB Report
EGAF00004174320 fastq.gz 95.5 MB
EGAF00004174321 fastq.gz 111.1 MB
EGAF00004174322 fastq.gz 122.1 MB Report
EGAF00004174323 fastq.gz 95.4 MB Report
EGAF00004174324 fastq.gz 191.6 MB Report
EGAF00004174325 fastq.gz 232.0 MB
EGAF00004174326 fastq.gz 239.3 MB
EGAF00004174327 fastq.gz 159.0 MB Report
48 Files (13.1 GB)