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Genomic and transcriptomic data of glioma specimens

Dataset consists of 207 glioma samples of WHO grades II, III and IV. Dataset consists 182 tumor derived genomic data of ~700 cancer-related and epigenetic-related genes with matched blood samples for 48 specimens. Dataset also consists transcriptomic data for 105 specimens. In total 335 bam files were deposited.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

Nencki Institute NGS Core Facility Data Access Committee agrees to share its data under conditions specified in the DATA ACCESS POLICY document.

DATA ACCESS POLICY These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Nencki Institute NGS Core Facility Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Nencki Institute NGS Core Facility Data Access Committee responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Nencki Institute NGS Core Facility Data Access Committee: Nencki Institute of Experimental Biology, Polish Academy of Sciences, Pasteur str 3 02-796 Warsaw, Poland 1. The User Institution agrees to only use these Data for the purpose of the Project (described before accessing the data) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in the project description. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use all measures to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy of the Data. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Nencki Institute NGS Core Facility Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Nencki Institute NGS Core Facility Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Nencki Institute NGS Core Facility Data Access Committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. Any agreements based on that policies (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of European Union and shall be subject to the exclusive jurisdiction of the Polish and EU courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004556 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00004177337 bam 3.0 GB Report
EGAF00004177338 bam 569.7 MB Report
EGAF00004177339 bam 3.0 GB Report
EGAF00004177340 bam 531.3 MB Report
EGAF00004177341 bam 1.7 GB Report
EGAF00004177342 bam 635.8 MB Report
EGAF00004177343 bam 2.8 GB Report
EGAF00004177344 bam 735.2 MB Report
EGAF00004177345 bam 879.8 MB Report
EGAF00004177346 bam 656.1 MB Report
EGAF00004177347 bam 2.7 GB Report
EGAF00004177348 bam 601.4 MB Report
EGAF00004177349 bam 1.8 GB Report
EGAF00004177350 bam 515.9 MB Report
EGAF00004177351 bam 2.1 GB Report
EGAF00004177352 bam 601.6 MB Report
EGAF00004177353 bam 2.3 GB Report
EGAF00004177354 bam 597.9 MB Report
EGAF00004177355 bam 3.2 GB Report
EGAF00004177356 bam 553.0 MB Report
EGAF00004177357 bam 2.4 GB Report
EGAF00004177358 bam 731.0 MB Report
EGAF00004177359 bam 1.4 GB Report
EGAF00004177360 bam 624.9 MB Report
EGAF00004177361 bam 1.9 GB Report
EGAF00004177362 bam 631.5 MB Report
EGAF00004177363 bam 1.1 GB Report
EGAF00004177364 bam 679.4 MB Report
EGAF00004177365 bam 1.9 GB Report
EGAF00004177366 bam 1.2 GB Report
EGAF00004177367 bam 755.1 MB Report
EGAF00004177368 bam 1.1 GB Report
EGAF00004177369 bam 653.8 MB Report
EGAF00004177370 bam 1.9 GB Report
EGAF00004177371 bam 371.7 MB Report
EGAF00004177372 bam 2.7 GB Report
EGAF00004177373 bam 504.5 MB Report
EGAF00004177374 bam 2.6 GB Report
EGAF00004177375 bam 586.9 MB Report
EGAF00004177376 bam 1.3 GB Report
EGAF00004177377 bam 673.6 MB Report
EGAF00004177378 bam 2.9 GB Report
EGAF00004177379 bam 664.9 MB Report
EGAF00004177380 bam 1.7 GB Report
EGAF00004177381 bam 2.8 GB Report
EGAF00004177382 bam 601.1 MB Report
EGAF00004177383 bam 3.5 GB Report
EGAF00004177384 bam 585.6 MB Report
EGAF00004177385 bam 3.2 GB Report
EGAF00004177386 bam 706.5 MB Report
EGAF00004177387 bam 906.2 MB Report
EGAF00004177388 bam 698.9 MB Report
EGAF00004177389 bam 1.1 GB Report
EGAF00004177390 bam 453.9 MB Report
EGAF00004177391 bam 1.5 GB Report
EGAF00004177392 bam 2.3 GB Report
EGAF00004177393 bam 1.6 GB Report
EGAF00004177394 bam 2.9 GB Report
EGAF00004177395 bam 471.9 MB Report
EGAF00004177396 bam 637.8 MB Report
EGAF00004177397 bam 2.5 GB Report
EGAF00004177398 bam 2.8 GB Report
EGAF00004177399 bam 2.0 GB Report
EGAF00004177400 bam 2.0 GB Report
EGAF00004177401 bam 3.6 GB Report
EGAF00004177402 bam 727.9 MB Report
EGAF00004177403 bam 2.5 GB Report
EGAF00004177404 bam 1.7 GB Report
EGAF00004177405 bam 2.1 GB Report
EGAF00004177406 bam 4.1 GB Report
EGAF00004177407 bam 611.3 MB Report
EGAF00004177408 bam 625.7 MB Report
EGAF00004177409 bam 3.0 GB Report
EGAF00004177410 bam 2.6 GB Report
EGAF00004177411 bam 2.2 GB Report
EGAF00004177412 bam 2.1 GB Report
EGAF00004177413 bam 2.3 GB Report
EGAF00004177414 bam 3.6 GB Report
EGAF00004177415 bam 2.7 GB Report
EGAF00004177416 bam 2.3 GB Report
EGAF00004177417 bam 2.6 GB Report
EGAF00004177418 bam 1.4 GB Report
EGAF00004177419 bam 604.7 MB Report
EGAF00004177420 bam 3.3 GB Report
EGAF00004177421 bam 2.9 GB Report
EGAF00004177422 bam 2.8 GB Report
EGAF00004177423 bam 2.0 GB Report
EGAF00004177424 bam 1.2 GB Report
EGAF00004177425 bam 1.4 GB Report
EGAF00004177426 bam 1.4 GB Report
EGAF00004177427 bam 1.2 GB Report
EGAF00004177428 bam 2.7 GB Report
EGAF00004177429 bam 2.1 GB Report
EGAF00004177430 bam 3.0 GB Report
EGAF00004177431 bam 649.8 MB Report
EGAF00004177432 bam 1.6 GB Report
EGAF00004177433 bam 3.7 GB Report
EGAF00004177434 bam 3.2 GB Report
EGAF00004177435 bam 3.4 GB Report
EGAF00004177436 bam 2.9 GB Report
EGAF00004177437 bam 2.3 GB Report
EGAF00004177438 bam 3.2 GB Report
EGAF00004177439 bam 656.0 MB Report
EGAF00004177440 bam 3.0 GB Report
EGAF00004177441 bam 1.6 GB Report
EGAF00004177442 bam 2.1 GB Report
EGAF00004177443 bam 3.2 GB Report
EGAF00004177444 bam 816.0 MB Report
EGAF00004177445 bam 2.7 GB Report
EGAF00004177446 bam 615.9 MB Report
EGAF00004177447 bam 2.5 GB Report
EGAF00004177448 bam 2.6 GB Report
EGAF00004177449 bam 1.7 GB Report
EGAF00004177450 bam 697.0 MB Report
EGAF00004177451 bam 544.3 MB Report
EGAF00004177452 bam 482.4 MB Report
EGAF00004177453 bam 2.7 GB Report
EGAF00004177454 bam 543.5 MB Report
EGAF00004177455 bam 1.8 GB Report
EGAF00004177456 bam 633.1 MB Report
EGAF00004177457 bam 1.6 GB Report
EGAF00004177458 bam 500.7 MB Report
EGAF00004177459 bam 3.3 GB Report
EGAF00004177460 bam 2.1 GB Report
EGAF00004177461 bam 1.5 GB Report
EGAF00004177462 bam 2.9 GB Report
EGAF00004177463 bam 2.4 GB Report
EGAF00004177464 bam 1.7 GB Report
EGAF00004177465 bam 393.5 MB Report
EGAF00004177466 bam 1.7 GB Report
EGAF00004177467 bam 1.4 GB Report
EGAF00004177468 bam 2.0 GB Report
EGAF00004177469 bam 631.4 MB Report
EGAF00004177470 bam 3.4 GB Report
EGAF00004177471 bam 1.5 GB Report
EGAF00004177472 bam 1.7 GB Report
EGAF00004177473 bam 2.0 GB Report
EGAF00004177474 bam 485.3 MB Report
EGAF00004177475 bam 1.4 GB Report
EGAF00004177476 bam 2.2 GB Report
EGAF00004177477 bam 1.7 GB Report
EGAF00004177478 bam 654.0 MB Report
EGAF00004177479 bam 2.5 GB Report
EGAF00004177480 bam 1.6 GB Report
EGAF00004177481 bam 2.8 GB Report
EGAF00004177482 bam 317.3 MB Report
EGAF00004177483 bam 2.0 GB Report
EGAF00004177484 bam 1.9 GB Report
EGAF00004177485 bam 2.8 GB Report
EGAF00004177486 bam 3.5 GB Report
EGAF00004177487 bam 2.5 GB Report
EGAF00004177488 bam 394.8 MB Report
EGAF00004177489 bam 2.3 GB Report
EGAF00004177490 bam 1.9 GB Report
EGAF00004177491 bam 2.6 GB Report
EGAF00004177492 bam 377.6 MB Report
EGAF00004177493 bam 1.7 GB Report
EGAF00004177494 bam 2.5 GB Report
EGAF00004177495 bam 628.7 MB Report
EGAF00004177496 bam 1.6 GB Report
EGAF00004177497 bam 2.0 GB Report
EGAF00004177498 bam 1.2 GB Report
EGAF00004177499 bam 326.1 MB Report
EGAF00004177500 bam 1.8 GB Report
EGAF00004177501 bam 2.4 GB Report
EGAF00004177502 bam 2.5 GB Report
EGAF00004177503 bam 2.5 GB Report
EGAF00004177504 bam 2.0 GB Report
EGAF00004177505 bam 278.6 MB Report
EGAF00004177506 bam 2.2 GB Report
EGAF00004177507 bam 2.2 GB Report
EGAF00004177508 bam 2.4 GB Report
EGAF00004177509 bam 2.7 GB Report
EGAF00004177510 bam 643.7 MB Report
EGAF00004177511 bam 2.9 GB Report
EGAF00004177512 bam 2.2 GB Report
EGAF00004177513 bam 1.7 GB Report
EGAF00004177514 bam 1.1 GB Report
EGAF00004177515 bam 2.6 GB Report
EGAF00004177516 bam 2.0 GB Report
EGAF00004177517 bam 2.4 GB Report
EGAF00004177518 bam 2.7 GB Report
EGAF00004177519 bam 2.5 GB Report
EGAF00004177520 bam 1.6 GB Report
EGAF00004177521 bam 2.9 GB Report
EGAF00004177522 bam 2.0 GB Report
EGAF00004177523 bam 3.5 GB Report
EGAF00004177524 bam 1.9 GB Report
EGAF00004177525 bam 2.2 GB Report
EGAF00004177526 bam 3.0 GB Report
EGAF00004177527 bam 877.0 MB Report
EGAF00004177528 bam 1.8 GB Report
EGAF00004177529 bam 1.8 GB Report
EGAF00004177530 bam 2.2 GB Report
EGAF00004177531 bam 678.5 MB Report
EGAF00004177532 bam 2.7 GB Report
EGAF00004177533 bam 817.8 MB Report
EGAF00004177534 bam 2.0 GB Report
EGAF00004177535 bam 1.8 GB Report
EGAF00004177536 bam 2.3 GB Report
EGAF00004177537 bam 3.0 GB Report
EGAF00004177538 bam 2.2 GB Report
EGAF00004177539 bam 2.6 GB Report
EGAF00004177540 bam 1.8 GB Report
EGAF00004177541 bam 2.5 GB Report
EGAF00004177542 bam 2.2 GB Report
EGAF00004177543 bam 1.2 GB Report
EGAF00004177544 bam 2.8 GB Report
EGAF00004177545 bam 2.5 GB Report
EGAF00004177546 bam 3.4 GB Report
EGAF00004177547 bam 3.3 GB Report
EGAF00004177548 bam 3.2 GB Report
EGAF00004177549 bam 1.9 GB Report
EGAF00004177550 bam 2.7 GB Report
EGAF00004177551 bam 3.1 GB Report
EGAF00004177552 bam 1.1 GB Report
EGAF00004177553 bam 2.2 GB Report
EGAF00004177554 bam 3.2 GB Report
EGAF00004177555 bam 1.8 GB Report
EGAF00004177556 bam 1.2 GB Report
EGAF00004177557 bam 2.5 GB Report
EGAF00004177558 bam 1.4 GB Report
EGAF00004177559 bam 2.6 GB Report
EGAF00004177560 bam 1.5 GB Report
EGAF00004177561 bam 2.1 GB Report
EGAF00004177562 bam 1.6 GB Report
EGAF00004177563 bam 2.7 GB Report
EGAF00004177564 bam 883.2 MB Report
EGAF00004177565 bam 2.1 GB Report
EGAF00004177566 bam 1.7 GB Report
EGAF00004177567 bam 1.8 GB Report
EGAF00004177568 bam 2.1 GB Report
EGAF00004177569 bam 1.6 GB Report
EGAF00004177570 bam 1.1 GB Report
EGAF00004177571 bam 3.2 GB Report
EGAF00004177572 bam 1.1 GB Report
EGAF00004177573 bam 2.4 GB Report
EGAF00004177574 bam 2.1 GB Report
EGAF00004177575 bam 3.2 GB Report
EGAF00004177576 bam 308.7 MB Report
EGAF00004177577 bam 2.3 GB Report
EGAF00004177578 bam 1.7 GB Report
EGAF00004177579 bam 2.1 GB Report
EGAF00004177580 bam 3.4 GB Report
EGAF00004177581 bam 1.8 GB Report
EGAF00004177582 bam 1.8 GB Report
EGAF00004177583 bam 1.0 GB Report
EGAF00004177584 bam 1.8 GB Report
EGAF00004177585 bam 1.3 GB Report
EGAF00004177586 bam 3.7 GB Report
EGAF00004177587 bam 1.7 GB Report
EGAF00004177588 bam 1.8 GB Report
EGAF00004177589 bam 2.2 GB Report
EGAF00004177590 bam 1.8 GB Report
EGAF00004177591 bam 1.7 GB Report
EGAF00004177592 bam 1.8 GB Report
EGAF00004177593 bam 3.2 GB Report
EGAF00004177594 bam 2.6 GB Report
EGAF00004177595 bam 1.8 GB Report
EGAF00004177596 bam 2.8 GB Report
EGAF00004177597 bam 2.3 GB Report
EGAF00004177598 bam 3.0 GB Report
EGAF00004177599 bam 2.9 GB Report
EGAF00004177600 bam 336.3 MB Report
EGAF00004177601 bam 2.9 GB Report
EGAF00004177602 bam 2.0 GB Report
EGAF00004177603 bam 2.6 GB Report
EGAF00004177604 bam 1.3 GB Report
EGAF00004177605 bam 1.7 GB Report
EGAF00004177606 bam 723.7 MB Report
EGAF00004177607 bam 1.5 GB Report
EGAF00004177608 bam 2.2 GB Report
EGAF00004177609 bam 2.5 GB Report
EGAF00004177610 bam 1.9 GB Report
EGAF00004177611 bam 5.3 GB Report
EGAF00004177612 bam 2.1 GB Report
EGAF00004177613 bam 3.5 GB Report
EGAF00004177614 bam 1.8 GB Report
EGAF00004177615 bam 2.3 GB Report
EGAF00004177616 bam 1.8 GB Report
EGAF00004177617 bam 2.5 GB Report
EGAF00004177618 bam 4.3 GB Report
EGAF00004177619 bam 1.8 GB Report
EGAF00004177620 bam 3.6 GB Report
EGAF00004177621 bam 2.0 GB Report
EGAF00004177622 bam 3.2 GB Report
EGAF00004177623 bam 3.0 GB Report
EGAF00004177624 bam 490.7 MB Report
EGAF00004177625 bam 3.7 GB Report
EGAF00004177626 bam 1.3 GB Report
EGAF00004177627 bam 3.8 GB Report
EGAF00004177628 bam 1.4 GB Report
EGAF00004177629 bam 2.6 GB Report
EGAF00004177630 bam 514.4 MB Report
EGAF00004177631 bam 2.4 GB Report
EGAF00004177632 bam 1.9 GB Report
EGAF00004177633 bam 1.6 GB Report
EGAF00004177634 bam 3.3 GB Report
EGAF00004177635 bam 2.7 GB Report
EGAF00004177636 bam 4.1 GB Report
EGAF00004177637 bam 2.4 GB Report
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EGAF00004177639 bam 3.2 GB Report
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EGAF00004177641 bam 1.6 GB Report
EGAF00004177642 bam 2.6 GB Report
EGAF00004177643 bam 2.2 GB Report
EGAF00004177644 bam 2.9 GB Report
EGAF00004177645 bam 2.2 GB Report
EGAF00004177646 bam 1.5 GB Report
EGAF00004177647 bam 2.5 GB Report
EGAF00004177648 bam 651.8 MB Report
EGAF00004177649 bam 2.4 GB Report
EGAF00004177650 bam 3.8 GB Report
EGAF00004177651 bam 2.4 GB Report
EGAF00004177652 bam 2.4 GB Report
EGAF00004177653 bam 2.7 GB Report
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EGAF00004177655 bam 1.6 GB Report
EGAF00004177656 bam 2.3 GB Report
EGAF00004177657 bam 562.4 MB Report
EGAF00004177658 bam 1.9 GB Report
EGAF00004177659 bam 2.4 GB Report
EGAF00004177660 bam 1.6 GB Report
EGAF00004177661 bam 2.5 GB Report
EGAF00004177662 bam 2.3 GB Report
EGAF00004177663 bam 781.4 MB Report
EGAF00004177664 bam 2.2 GB Report
EGAF00004177665 bam 2.7 GB Report
EGAF00004177666 bam 2.2 GB Report
EGAF00004177667 bam 2.3 GB Report
EGAF00004177668 bam 2.9 GB Report
EGAF00004177669 bam 591.8 MB Report
EGAF00004177670 bam 763.3 MB Report
EGAF00004177671 bam 1.6 GB Report
335 Files (657.1 GB)