About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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FASTQ files of the polyA+ (oligo-dT) RNA-Seq dataset from the POPS SGA (Small for Gestational Age) samples and their matched controls.

FASTQ files of the polyA+ (oligo-dT) RNA-Seq dataset from the POPS SGA (Small for Gestational Age) samples and their matched controls. The POP study placental biopsies were collected within 30 minutes of birth and flash frozen in RNAlater (ThermoFisher). For each biopsy, total placental RNA was extracted from approximately 5 mg of tissue using the “mirVana miRNA Isolation Kit” (Ambion) followed by DNase treatment (“DNA-free DNA Removal Kit”, Ambion). RNA quality was assessed with the Agilent Bioanalyzer and all the samples with RIN values ≥ 7.0 were used in the downstream experiments. RNA-libraries were prepared from 1g of total placental RNA with the TruSeq Stranded mRNA Library Prep Kit (Illumina) which captures polyA-tailed transcripts by oligo-dT beads, then pooled and sequenced (single-end, 50bp) using a Single End V4 cluster kit and Illumina HiSeq2500

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DUO:0000006
version: 2019-01-07

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

POPS data access policy

You are not authroised to access POPS data unless you have a written permission from the data access committee which you can contact below: D. Stephen Charnock-Jones. Professor of Reproductive Biology. Department of Obstetrics and Gynaecology. University of Cambridge. The Rosie Hospital, Cambridge. CB2 0SW UK email dscj1@cam.ac.uk Tel +44 1223 336875 Fax +44 1223 215327

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002205 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004177078 fq.gz 360.2 MB Report
EGAF00004177079 fq.gz 340.8 MB Report
EGAF00004177080 fq.gz 326.8 MB Report
EGAF00004177081 fq.gz 364.2 MB Report
EGAF00004177082 fq.gz 261.8 MB Report
EGAF00004177083 fq.gz 247.3 MB Report
EGAF00004177084 fq.gz 236.9 MB Report
EGAF00004177085 fq.gz 264.1 MB Report
EGAF00004177086 fq.gz 1.2 GB Report
EGAF00004177087 fq.gz 206.3 MB Report
EGAF00004177088 fq.gz 194.8 MB Report
EGAF00004177089 fq.gz 186.3 MB Report
EGAF00004177090 fq.gz 209.4 MB Report
EGAF00004177091 fq.gz 1.5 GB Report
EGAF00004177092 fq.gz 238.0 MB Report
EGAF00004177093 fq.gz 224.3 MB Report
EGAF00004177094 fq.gz 214.9 MB Report
EGAF00004177095 fq.gz 241.3 MB Report
EGAF00004177096 fq.gz 310.2 MB Report
EGAF00004177097 fq.gz 293.7 MB Report
EGAF00004177098 fq.gz 281.4 MB Report
EGAF00004177099 fq.gz 313.7 MB Report
EGAF00004177100 fq.gz 697.3 MB Report
EGAF00004177101 fq.gz 217.9 MB Report
EGAF00004177102 fq.gz 206.3 MB Report
EGAF00004177103 fq.gz 197.6 MB Report
EGAF00004177104 fq.gz 219.6 MB Report
EGAF00004177105 fq.gz 281.0 MB Report
EGAF00004177106 fq.gz 265.5 MB Report
EGAF00004177107 fq.gz 254.6 MB Report
EGAF00004177108 fq.gz 286.2 MB Report
EGAF00004177109 fq.gz 1.1 GB Report
EGAF00004177110 fq.gz 261.0 MB Report
EGAF00004177111 fq.gz 247.3 MB Report
EGAF00004177112 fq.gz 237.3 MB Report
EGAF00004177113 fq.gz 265.8 MB Report
EGAF00004177114 fq.gz 331.6 MB Report
EGAF00004177115 fq.gz 314.7 MB Report
EGAF00004177116 fq.gz 300.0 MB Report
EGAF00004177117 fq.gz 335.8 MB Report
EGAF00004177118 fq.gz 415.4 MB Report
EGAF00004177119 fq.gz 393.4 MB Report
EGAF00004177120 fq.gz 374.8 MB Report
EGAF00004177121 fq.gz 420.6 MB Report
EGAF00004177122 fq.gz 448.2 MB Report
EGAF00004177123 fq.gz 424.1 MB Report
EGAF00004177124 fq.gz 404.0 MB Report
EGAF00004177125 fq.gz 454.7 MB Report
EGAF00004177126 fq.gz 714.4 MB Report
EGAF00004177127 fq.gz 250.4 MB Report
EGAF00004177128 fq.gz 236.7 MB Report
EGAF00004177129 fq.gz 225.5 MB Report
EGAF00004177130 fq.gz 253.0 MB Report
EGAF00004177131 fq.gz 281.2 MB Report
EGAF00004177132 fq.gz 266.7 MB Report
EGAF00004177133 fq.gz 254.3 MB Report
EGAF00004177134 fq.gz 283.4 MB Report
EGAF00004177135 fq.gz 294.7 MB Report
EGAF00004177136 fq.gz 279.2 MB Report
EGAF00004177137 fq.gz 265.8 MB Report
EGAF00004177138 fq.gz 300.5 MB Report
EGAF00004177139 fq.gz 256.2 MB Report
EGAF00004177140 fq.gz 243.2 MB Report
EGAF00004177141 fq.gz 232.1 MB Report
EGAF00004177142 fq.gz 261.0 MB Report
EGAF00004177143 fq.gz 1.1 GB Report
EGAF00004177144 fq.gz 166.4 MB Report
EGAF00004177145 fq.gz 169.2 MB Report
EGAF00004177146 fq.gz 160.7 MB Report
EGAF00004177147 fq.gz 245.7 MB Report
EGAF00004177148 fq.gz 766.0 MB Report
EGAF00004177149 fq.gz 157.2 MB Report
EGAF00004177150 fq.gz 159.2 MB Report
EGAF00004177151 fq.gz 151.4 MB Report
EGAF00004177152 fq.gz 231.0 MB Report
EGAF00004177153 fq.gz 541.7 MB Report
EGAF00004177154 fq.gz 113.3 MB Report
EGAF00004177155 fq.gz 114.7 MB Report
EGAF00004177156 fq.gz 108.9 MB Report
EGAF00004177157 fq.gz 167.9 MB Report
EGAF00004177158 fq.gz 547.7 MB Report
EGAF00004177159 fq.gz 151.4 MB Report
EGAF00004177160 fq.gz 153.3 MB Report
EGAF00004177161 fq.gz 145.6 MB Report
EGAF00004177162 fq.gz 223.0 MB Report
EGAF00004177163 fq.gz 653.9 MB Report
EGAF00004177164 fq.gz 142.8 MB Report
EGAF00004177165 fq.gz 144.8 MB Report
EGAF00004177166 fq.gz 137.5 MB Report
EGAF00004177167 fq.gz 208.3 MB Report
EGAF00004177168 fq.gz 585.5 MB Report
EGAF00004177169 fq.gz 162.6 MB Report
EGAF00004177170 fq.gz 165.5 MB Report
EGAF00004177171 fq.gz 156.8 MB Report
EGAF00004177172 fq.gz 239.4 MB Report
EGAF00004177173 fq.gz 798.0 MB Report
EGAF00004177174 fq.gz 193.0 MB Report
EGAF00004177175 fq.gz 195.4 MB Report
EGAF00004177176 fq.gz 185.6 MB Report
EGAF00004177177 fq.gz 285.3 MB Report
EGAF00004177178 fq.gz 907.7 MB Report
EGAF00004177179 fq.gz 166.0 MB Report
EGAF00004177180 fq.gz 168.5 MB Report
EGAF00004177181 fq.gz 160.4 MB Report
EGAF00004177182 fq.gz 243.0 MB Report
EGAF00004177183 fq.gz 396.1 MB Report
EGAF00004177184 fq.gz 374.4 MB Report
EGAF00004177185 fq.gz 356.7 MB Report
EGAF00004177186 fq.gz 394.2 MB Report
EGAF00004177187 fq.gz 349.0 MB Report
EGAF00004177188 fq.gz 328.9 MB Report
EGAF00004177189 fq.gz 313.2 MB Report
EGAF00004177190 fq.gz 346.8 MB Report
EGAF00004177191 fq.gz 306.3 MB Report
EGAF00004177192 fq.gz 289.5 MB Report
EGAF00004177193 fq.gz 275.2 MB Report
EGAF00004177194 fq.gz 307.3 MB Report
EGAF00004177195 fq.gz 977.3 MB Report
EGAF00004177196 fq.gz 256.2 MB Report
EGAF00004177197 fq.gz 241.6 MB Report
EGAF00004177198 fq.gz 230.0 MB Report
EGAF00004177199 fq.gz 256.7 MB Report
EGAF00004177200 fq.gz 289.9 MB Report
EGAF00004177201 fq.gz 274.8 MB Report
EGAF00004177202 fq.gz 262.1 MB Report
EGAF00004177203 fq.gz 288.2 MB Report
EGAF00004177204 fq.gz 541.3 MB Report
EGAF00004177205 fq.gz 512.1 MB Report
EGAF00004177206 fq.gz 487.3 MB Report
EGAF00004177207 fq.gz 535.2 MB Report
EGAF00004177208 fq.gz 555.9 MB Report
EGAF00004177209 fq.gz 525.5 MB Report
EGAF00004177210 fq.gz 499.8 MB Report
EGAF00004177211 fq.gz 558.6 MB Report
EGAF00004177212 fq.gz 357.2 MB Report
EGAF00004177213 fq.gz 337.5 MB Report
EGAF00004177214 fq.gz 321.2 MB Report
EGAF00004177215 fq.gz 356.7 MB Report
EGAF00004177216 fq.gz 542.6 MB Report
EGAF00004177217 fq.gz 542.8 MB Report
EGAF00004177218 fq.gz 542.4 MB Report
EGAF00004177219 fq.gz 438.3 MB Report
EGAF00004177220 fq.gz 438.3 MB Report
EGAF00004177221 fq.gz 437.6 MB Report
EGAF00004177222 fq.gz 453.7 MB Report
EGAF00004177223 fq.gz 284.1 MB Report
EGAF00004177224 fq.gz 284.1 MB Report
EGAF00004177225 fq.gz 283.6 MB Report
EGAF00004177226 fq.gz 543.7 MB Report
EGAF00004177227 fq.gz 290.0 MB Report
EGAF00004177228 fq.gz 290.3 MB Report
EGAF00004177229 fq.gz 289.8 MB Report
EGAF00004177230 fq.gz 497.8 MB Report
EGAF00004177231 fq.gz 497.8 MB Report
EGAF00004177232 fq.gz 497.3 MB Report
EGAF00004177233 fq.gz 445.7 MB Report
EGAF00004177234 fq.gz 445.6 MB Report
EGAF00004177235 fq.gz 445.1 MB Report
EGAF00004177236 fq.gz 529.2 MB Report
EGAF00004177237 fq.gz 529.5 MB Report
EGAF00004177238 fq.gz 528.7 MB Report
EGAF00004177239 fq.gz 451.2 MB Report
EGAF00004177240 fq.gz 451.2 MB Report
EGAF00004177241 fq.gz 450.7 MB Report
EGAF00004177242 fq.gz 480.3 MB Report
EGAF00004177243 fq.gz 480.7 MB Report
EGAF00004177244 fq.gz 479.6 MB Report
EGAF00004177245 fq.gz 437.3 MB Report
EGAF00004177246 fq.gz 437.2 MB Report
EGAF00004177247 fq.gz 436.6 MB Report
EGAF00004177248 fq.gz 408.4 MB Report
EGAF00004177249 fq.gz 408.3 MB Report
EGAF00004177250 fq.gz 408.0 MB Report
EGAF00004177251 fq.gz 530.0 MB Report
EGAF00004177252 fq.gz 530.3 MB Report
EGAF00004177253 fq.gz 529.4 MB Report
EGAF00004177254 fq.gz 376.0 MB Report
EGAF00004177255 fq.gz 376.3 MB Report
EGAF00004177256 fq.gz 375.4 MB Report
EGAF00004177257 fq.gz 330.1 MB Report
EGAF00004177258 fq.gz 330.0 MB Report
EGAF00004177259 fq.gz 329.7 MB Report
EGAF00004177260 fq.gz 418.8 MB Report
EGAF00004177261 fq.gz 419.4 MB Report
EGAF00004177262 fq.gz 418.1 MB Report
EGAF00004177263 fq.gz 426.4 MB Report
EGAF00004177264 fq.gz 427.0 MB Report
EGAF00004177265 fq.gz 426.2 MB Report
EGAF00004177266 fq.gz 585.9 MB Report
EGAF00004177267 fq.gz 585.1 MB Report
EGAF00004177268 fq.gz 584.9 MB Report
EGAF00004177269 fq.gz 486.5 MB Report
EGAF00004177270 fq.gz 486.6 MB Report
EGAF00004177271 fq.gz 485.8 MB Report
EGAF00004177272 fq.gz 407.1 MB Report
EGAF00004177273 fq.gz 406.9 MB Report
EGAF00004177274 fq.gz 406.7 MB Report
EGAF00004177275 fq.gz 488.6 MB Report
EGAF00004177276 fq.gz 488.2 MB Report
EGAF00004177277 fq.gz 487.5 MB Report
EGAF00004177278 fq.gz 367.5 MB Report
EGAF00004177279 fq.gz 367.5 MB Report
EGAF00004177280 fq.gz 367.0 MB Report
EGAF00004177281 fq.gz 453.1 MB Report
EGAF00004177282 fq.gz 453.1 MB Report
EGAF00004177283 fq.gz 452.4 MB Report
EGAF00004177284 fq.gz 513.0 MB Report
EGAF00004177285 fq.gz 513.4 MB Report
EGAF00004177286 fq.gz 512.4 MB Report
EGAF00004177287 fq.gz 430.0 MB Report
EGAF00004177288 fq.gz 430.2 MB Report
EGAF00004177289 fq.gz 429.6 MB Report
EGAF00004177290 fq.gz 535.3 MB Report
EGAF00004177291 fq.gz 85.1 MB Report
EGAF00004177292 fq.gz 85.1 MB Report
EGAF00004177293 fq.gz 85.9 MB Report
EGAF00004177294 fq.gz 84.6 MB Report
EGAF00004177295 fq.gz 85.3 MB Report
EGAF00004177296 fq.gz 159.2 MB Report
EGAF00004177297 fq.gz 159.4 MB Report
EGAF00004177298 fq.gz 159.0 MB Report
EGAF00004177299 fq.gz 88.8 MB Report
EGAF00004177300 fq.gz 305.2 MB Report
EGAF00004177301 fq.gz 54.7 MB Report
EGAF00004177302 fq.gz 54.6 MB Report
EGAF00004177303 fq.gz 55.3 MB Report
EGAF00004177304 fq.gz 54.6 MB Report
EGAF00004177305 fq.gz 54.9 MB Report
EGAF00004177306 fq.gz 79.9 MB Report
EGAF00004177307 fq.gz 80.0 MB Report
EGAF00004177308 fq.gz 79.8 MB Report
EGAF00004177309 fq.gz 57.4 MB Report
EGAF00004177310 fq.gz 449.3 MB Report
EGAF00004177311 fq.gz 76.2 MB Report
EGAF00004177312 fq.gz 76.0 MB Report
EGAF00004177313 fq.gz 76.9 MB Report
EGAF00004177314 fq.gz 75.7 MB Report
EGAF00004177315 fq.gz 76.2 MB Report
EGAF00004177316 fq.gz 128.2 MB Report
EGAF00004177317 fq.gz 128.2 MB Report
EGAF00004177318 fq.gz 127.9 MB Report
EGAF00004177319 fq.gz 79.3 MB Report
EGAF00004177320 fq.gz 120.0 MB Report
EGAF00004177321 fq.gz 119.8 MB Report
EGAF00004177322 fq.gz 121.0 MB Report
EGAF00004177323 fq.gz 119.5 MB Report
EGAF00004177324 fq.gz 120.1 MB Report
EGAF00004177325 fq.gz 212.3 MB Report
EGAF00004177326 fq.gz 212.6 MB Report
EGAF00004177327 fq.gz 212.2 MB Report
EGAF00004177328 fq.gz 125.9 MB Report
251 Files (84.2 GB)