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RNA-Seq samples from the BELOB clinical trial study to find transcriptome associations with response to Bevacizumab and CCNU in glioblastoma patients

RNA-Seq samples from the BELOB clinical trial study to find transcriptome associations with response to Bevacizumab and CCNU in glioblastoma patients

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This agreement governs the terms on which access will be granted to the phenotype and genotype data generated by the BELOB consortium.

THE BELOB CONSORTIUM DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the phenotype and genotype data generated by the BELOB consortium. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Consortium means the BELOB Consortium comprised out of the following members: Dr. Pim French and Prof. Dr. Martin J. van den Bent and Dr. Youri Hoogstrate. Data means all and any human genetic/transcriptomic data and matching metadata obtained from the Consortium. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data from this cohort or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. The relevant access committees will see to it that the Data is not used in publications outside the project described in the original application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. This agreement shall be construed, interpreted and governed by the laws of the Netherlands and shall be subject to the non-exclusive jurisdiction of the Dutch courts. SCHEDULE 1 Publications Policy The primary purpose of the BELOB Consortium is to accelerate efforts to identify genome/transcriptome sequence variants in brain tumours and find covariates that predict response to Bevacizumab and CCNU therapy, through implementation and analysis of large-scale genome-wide association studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to association studies in general. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of expression, structural variants, polymorphism and in guiding selection of markers to map genes involved in specific diseases. Authors who use data from the project must acknowledge the BELOB Consortium using the following wording "This study makes use of data generated for the BELOB clinical trial [Cite the relevant primary publications, including 10.1158/0008-5472.CAN-15-0776]". Users should note that the Consortium bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004570 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004196385 fastq.gz 1.4 GB
EGAF00004196386 fastq.gz 1.5 GB
EGAF00004196387 fastq.gz 1.5 GB
EGAF00004196388 fastq.gz 1.5 GB
EGAF00004196389 fastq.gz 1.5 GB
EGAF00004196390 fastq.gz 1.5 GB
EGAF00004196391 fastq.gz 1.5 GB
EGAF00004196392 fastq.gz 1.5 GB
EGAF00004196393 fastq.gz 1.4 GB
EGAF00004196394 fastq.gz 1.5 GB
EGAF00004196395 fastq.gz 1.5 GB
EGAF00004196396 fastq.gz 1.5 GB
EGAF00004196397 fastq.gz 1.4 GB
EGAF00004196398 fastq.gz 1.5 GB
EGAF00004196399 fastq.gz 1.3 GB
EGAF00004196400 fastq.gz 1.3 GB
EGAF00004196401 fastq.gz 1.6 GB
EGAF00004196402 fastq.gz 1.6 GB
EGAF00004196403 fastq.gz 1.9 GB
EGAF00004196404 fastq.gz 1.9 GB
EGAF00004196405 fastq.gz 1.4 GB
EGAF00004196406 fastq.gz 1.5 GB
EGAF00004196407 fastq.gz 1.5 GB
EGAF00004196408 fastq.gz 1.5 GB
EGAF00004196409 fastq.gz 1.7 GB
EGAF00004196410 fastq.gz 1.8 GB
EGAF00004196411 fastq.gz 1.6 GB
EGAF00004196412 fastq.gz 1.6 GB
EGAF00004196413 fastq.gz 1.4 GB
EGAF00004196414 fastq.gz 1.4 GB
EGAF00004196415 fastq.gz 1.7 GB
EGAF00004196416 fastq.gz 1.7 GB
EGAF00004196417 fastq.gz 1.6 GB
EGAF00004196418 fastq.gz 1.6 GB
EGAF00004196419 fastq.gz 1.6 GB
EGAF00004196420 fastq.gz 1.6 GB
EGAF00004196421 fastq.gz 1.7 GB
EGAF00004196422 fastq.gz 1.7 GB
EGAF00004196423 fastq.gz 1.3 GB
EGAF00004196424 fastq.gz 1.4 GB
EGAF00004196425 fastq.gz 1.3 GB
EGAF00004196426 fastq.gz 1.3 GB
EGAF00004196427 fastq.gz 1.5 GB
EGAF00004196428 fastq.gz 1.6 GB
EGAF00004196429 fastq.gz 1.6 GB
EGAF00004196430 fastq.gz 1.7 GB
EGAF00004196431 fastq.gz 1.4 GB
EGAF00004196432 fastq.gz 1.4 GB
EGAF00004196433 fastq.gz 1.4 GB
EGAF00004196434 fastq.gz 1.4 GB
EGAF00004196435 fastq.gz 1.3 GB
EGAF00004196436 fastq.gz 1.3 GB
EGAF00004196437 fastq.gz 1.5 GB
EGAF00004196438 fastq.gz 1.5 GB
EGAF00004196439 fastq.gz 1.5 GB
EGAF00004196440 fastq.gz 1.6 GB
EGAF00004196441 fastq.gz 1.4 GB
EGAF00004196442 fastq.gz 1.4 GB
EGAF00004196443 fastq.gz 1.4 GB
EGAF00004196444 fastq.gz 1.4 GB
EGAF00004196445 fastq.gz 1.7 GB
EGAF00004196446 fastq.gz 1.8 GB
EGAF00004196447 fastq.gz 1.5 GB
EGAF00004196448 fastq.gz 1.6 GB
EGAF00004196449 fastq.gz 1.7 GB
EGAF00004196450 fastq.gz 1.8 GB
EGAF00004196451 fastq.gz 1.7 GB
EGAF00004196452 fastq.gz 1.7 GB
EGAF00004196453 fastq.gz 1.3 GB
EGAF00004196454 fastq.gz 1.4 GB
EGAF00004196455 fastq.gz 1.5 GB
EGAF00004196456 fastq.gz 1.6 GB
EGAF00004196457 fastq.gz 1.4 GB
EGAF00004196458 fastq.gz 1.5 GB
EGAF00004196459 fastq.gz 1.4 GB
EGAF00004196460 fastq.gz 1.5 GB
EGAF00004196461 fastq.gz 1.4 GB
EGAF00004196462 fastq.gz 1.5 GB
EGAF00004196463 fastq.gz 1.6 GB
EGAF00004196464 fastq.gz 1.6 GB
EGAF00004196465 fastq.gz 1.4 GB
EGAF00004196466 fastq.gz 1.4 GB
EGAF00004196467 fastq.gz 1.4 GB
EGAF00004196468 fastq.gz 1.5 GB
EGAF00004196469 fastq.gz 1.6 GB
EGAF00004196470 fastq.gz 1.7 GB
EGAF00004196471 fastq.gz 1.5 GB
EGAF00004196472 fastq.gz 1.5 GB
EGAF00004196473 fastq.gz 1.8 GB
EGAF00004196474 fastq.gz 1.9 GB
EGAF00004196475 fastq.gz 1.7 GB
EGAF00004196476 fastq.gz 1.7 GB
EGAF00004196477 fastq.gz 1.6 GB
EGAF00004196478 fastq.gz 1.7 GB
EGAF00004196479 fastq.gz 1.6 GB
EGAF00004196480 fastq.gz 1.7 GB
EGAF00004196481 fastq.gz 1.4 GB
EGAF00004196482 fastq.gz 1.4 GB
EGAF00004196483 fastq.gz 1.3 GB
EGAF00004196484 fastq.gz 1.4 GB
EGAF00004196485 fastq.gz 1.5 GB
EGAF00004196486 fastq.gz 1.6 GB
EGAF00004196487 fastq.gz 1.8 GB
EGAF00004196488 fastq.gz 1.9 GB
EGAF00004196489 fastq.gz 1.8 GB
EGAF00004196490 fastq.gz 1.8 GB
EGAF00004196491 fastq.gz 1.6 GB
EGAF00004196492 fastq.gz 1.7 GB
EGAF00004196493 fastq.gz 1.7 GB
EGAF00004196494 fastq.gz 1.8 GB
EGAF00004196495 fastq.gz 1.6 GB
EGAF00004196496 fastq.gz 1.6 GB
EGAF00004196497 fastq.gz 1.5 GB
EGAF00004196498 fastq.gz 1.6 GB
EGAF00004196499 fastq.gz 1.5 GB
EGAF00004196500 fastq.gz 1.5 GB
EGAF00004196501 fastq.gz 1.5 GB
EGAF00004196502 fastq.gz 1.5 GB
EGAF00004196503 fastq.gz 1.6 GB
EGAF00004196504 fastq.gz 1.7 GB
EGAF00004196505 fastq.gz 1.4 GB
EGAF00004196506 fastq.gz 1.5 GB
EGAF00004196507 fastq.gz 1.5 GB
EGAF00004196508 fastq.gz 1.6 GB
EGAF00004196509 fastq.gz 1.4 GB
EGAF00004196510 fastq.gz 1.4 GB
EGAF00004196511 fastq.gz 1.2 GB
EGAF00004196512 fastq.gz 1.2 GB
EGAF00004196513 fastq.gz 1.9 GB
EGAF00004196514 fastq.gz 2.0 GB
EGAF00004196515 fastq.gz 1.4 GB
EGAF00004196516 fastq.gz 1.4 GB
EGAF00004196517 fastq.gz 1.5 GB
EGAF00004196518 fastq.gz 1.6 GB
EGAF00004196519 fastq.gz 1.4 GB
EGAF00004196520 fastq.gz 1.5 GB
EGAF00004196521 fastq.gz 1.6 GB
EGAF00004196522 fastq.gz 1.6 GB
EGAF00004196523 fastq.gz 1.3 GB
EGAF00004196524 fastq.gz 1.3 GB
EGAF00004196525 fastq.gz 1.5 GB
EGAF00004196526 fastq.gz 1.5 GB
EGAF00004196527 fastq.gz 1.4 GB
EGAF00004196528 fastq.gz 1.4 GB
EGAF00004196529 fastq.gz 1.3 GB
EGAF00004196530 fastq.gz 1.4 GB
EGAF00004196531 fastq.gz 1.4 GB
EGAF00004196532 fastq.gz 1.4 GB
EGAF00004196533 fastq.gz 1.5 GB
EGAF00004196534 fastq.gz 1.5 GB
EGAF00004196535 fastq.gz 1.5 GB
EGAF00004196536 fastq.gz 1.5 GB
EGAF00004196537 fastq.gz 1.3 GB
EGAF00004196538 fastq.gz 1.4 GB
EGAF00004196539 fastq.gz 1.5 GB
EGAF00004196540 fastq.gz 1.6 GB
EGAF00004196541 fastq.gz 1.4 GB
EGAF00004196542 fastq.gz 1.4 GB
EGAF00004196543 fastq.gz 1.3 GB
EGAF00004196544 fastq.gz 1.3 GB
EGAF00004196545 fastq.gz 1.4 GB
EGAF00004196546 fastq.gz 1.5 GB
EGAF00004196547 fastq.gz 2.0 GB
EGAF00004196548 fastq.gz 2.0 GB
EGAF00004196549 fastq.gz 1.5 GB
EGAF00004196550 fastq.gz 1.5 GB
EGAF00004196551 fastq.gz 1.6 GB
EGAF00004196552 fastq.gz 1.6 GB
EGAF00004196553 fastq.gz 1.5 GB
EGAF00004196554 fastq.gz 1.5 GB
EGAF00004196555 fastq.gz 1.7 GB
EGAF00004196556 fastq.gz 1.7 GB
EGAF00004196557 fastq.gz 1.6 GB
EGAF00004196558 fastq.gz 1.7 GB
EGAF00004196559 fastq.gz 1.7 GB
EGAF00004196560 fastq.gz 1.8 GB
EGAF00004196561 fastq.gz 2.1 GB
EGAF00004196562 fastq.gz 2.1 GB
EGAF00004196563 fastq.gz 1.7 GB
EGAF00004196564 fastq.gz 1.7 GB
EGAF00004196565 fastq.gz 1.8 GB
EGAF00004196566 fastq.gz 1.9 GB
EGAF00004196567 fastq.gz 1.7 GB
EGAF00004196568 fastq.gz 1.8 GB
EGAF00004196569 fastq.gz 1.7 GB
EGAF00004196570 fastq.gz 1.7 GB
EGAF00004196571 fastq.gz 1.8 GB
EGAF00004196572 fastq.gz 1.9 GB
EGAF00004196573 fastq.gz 1.8 GB
EGAF00004196574 fastq.gz 1.8 GB
EGAF00004196575 fastq.gz 1.7 GB
EGAF00004196576 fastq.gz 1.8 GB
192 Files (298.6 GB)