About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Metagenomic sequences from human stool samples

​DNA extraction from human stool samples was performed at the Center for Microbiome Innovation (CMI) at University of California, San Diego. DNA sequencing libraries were prepared using Nextera XT (Illumina). Shotgun DNA sequencing was performed on the Illumina HiSeq4000 platform. Raw fastq reads were quality-checked. Skewer (version 0.2.2) was utilized with the paired-end mode. Human reads were identified and removed by Bowtie2 mapping against the human genome reference (hg19), followed by bam2fastq with --unaligned --no-aligned --force options.

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NAFLD Research Center Data Access Policy

Any user accessing data from the UCSD NAFLD Research Center must adhere to its Data Access Policy, which indicates that investigators who download from the European Genome-phenome Archive (EGA) repository should: • Not attempt to identify individual human research participants from whom the data were obtained. • Acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s) and the EGA data repositories through which the investigator accessed any data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004600 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004457306 fastq.gz 104.9 MB Report
EGAF00004457307 fastq.gz 114.6 MB Report
EGAF00004457308 fastq.gz 93.9 MB Report
EGAF00004457309 fastq.gz 103.7 MB Report
EGAF00004457310 fastq.gz 112.0 MB Report
EGAF00004457311 fastq.gz 124.7 MB Report
EGAF00004457312 fastq.gz 133.0 MB Report
EGAF00004457313 fastq.gz 146.1 MB Report
EGAF00004457314 fastq.gz 58.4 MB Report
EGAF00004457315 fastq.gz 64.1 MB Report
EGAF00004457316 fastq.gz 67.6 MB Report
EGAF00004457317 fastq.gz 73.7 MB Report
EGAF00004457318 fastq.gz 231.4 MB Report
EGAF00004457319 fastq.gz 254.9 MB Report
EGAF00004457320 fastq.gz 290.0 MB Report
EGAF00004457321 fastq.gz 319.7 MB Report
EGAF00004457322 fastq.gz 176.7 MB Report
EGAF00004457323 fastq.gz 195.1 MB Report
EGAF00004457324 fastq.gz 93.6 MB Report
EGAF00004457325 fastq.gz 102.3 MB Report
EGAF00004457326 fastq.gz 140.2 MB Report
EGAF00004457327 fastq.gz 153.5 MB Report
EGAF00004457328 fastq.gz 102.1 MB Report
EGAF00004457329 fastq.gz 113.3 MB Report
EGAF00004457330 fastq.gz 63.1 MB Report
EGAF00004457331 fastq.gz 69.2 MB Report
EGAF00004457332 fastq.gz 72.5 MB Report
EGAF00004457333 fastq.gz 80.0 MB Report
EGAF00004457334 fastq.gz 99.4 MB Report
EGAF00004457335 fastq.gz 106.7 MB Report
EGAF00004457336 fastq.gz 119.3 MB Report
EGAF00004457337 fastq.gz 130.7 MB Report
EGAF00004457338 fastq.gz 236.9 MB Report
EGAF00004457339 fastq.gz 263.5 MB Report
EGAF00004457340 fastq.gz 268.6 MB Report
EGAF00004457341 fastq.gz 295.1 MB Report
EGAF00004457342 fastq.gz 115.4 MB Report
EGAF00004457343 fastq.gz 126.5 MB Report
EGAF00004457344 fastq.gz 56.2 MB Report
EGAF00004457345 fastq.gz 61.8 MB Report
EGAF00004457346 fastq.gz 111.9 MB Report
EGAF00004457347 fastq.gz 124.7 MB Report
EGAF00004457348 fastq.gz 112.7 MB Report
EGAF00004457349 fastq.gz 123.6 MB Report
EGAF00004457350 fastq.gz 78.4 MB Report
EGAF00004457351 fastq.gz 85.9 MB Report
EGAF00004457352 fastq.gz 54.0 MB Report
EGAF00004457353 fastq.gz 58.6 MB Report
EGAF00004457354 fastq.gz 61.9 MB Report
EGAF00004457355 fastq.gz 67.9 MB Report
EGAF00004457356 fastq.gz 117.1 MB Report
EGAF00004457357 fastq.gz 129.2 MB Report
EGAF00004457358 fastq.gz 91.4 MB Report
EGAF00004457359 fastq.gz 101.0 MB Report
EGAF00004457360 fastq.gz 192.7 MB Report
EGAF00004457361 fastq.gz 209.6 MB Report
EGAF00004457362 fastq.gz 550.1 MB Report
EGAF00004457363 fastq.gz 605.8 MB Report
EGAF00004457364 fastq.gz 73.6 MB Report
EGAF00004457365 fastq.gz 80.9 MB Report
EGAF00004457366 fastq.gz 130.0 MB Report
EGAF00004457367 fastq.gz 142.3 MB Report
EGAF00004457368 fastq.gz 71.1 MB Report
EGAF00004457369 fastq.gz 78.0 MB Report
EGAF00004457370 fastq.gz 149.8 MB Report
EGAF00004457371 fastq.gz 163.5 MB Report
EGAF00004457372 fastq.gz 73.5 MB Report
EGAF00004457373 fastq.gz 80.0 MB Report
EGAF00004457374 fastq.gz 79.9 MB Report
EGAF00004457375 fastq.gz 87.5 MB Report
EGAF00004457376 fastq.gz 131.2 MB Report
EGAF00004457377 fastq.gz 143.8 MB Report
EGAF00004457378 fastq.gz 190.6 MB Report
EGAF00004457379 fastq.gz 212.2 MB Report
EGAF00004457380 fastq.gz 195.2 MB Report
EGAF00004457381 fastq.gz 215.3 MB Report
EGAF00004457382 fastq.gz 90.3 MB Report
EGAF00004457383 fastq.gz 99.6 MB Report
EGAF00004457384 fastq.gz 106.1 MB Report
EGAF00004457385 fastq.gz 116.6 MB Report
EGAF00004457386 fastq.gz 115.7 MB Report
EGAF00004457387 fastq.gz 127.2 MB Report
EGAF00004457388 fastq.gz 156.4 MB Report
EGAF00004457389 fastq.gz 172.8 MB Report
EGAF00004457390 fastq.gz 120.5 MB Report
EGAF00004457391 fastq.gz 132.1 MB Report
EGAF00004457392 fastq.gz 134.3 MB Report
EGAF00004457393 fastq.gz 146.4 MB Report
EGAF00004457394 fastq.gz 186.2 MB Report
EGAF00004457395 fastq.gz 204.7 MB Report
EGAF00004457396 fastq.gz 125.9 MB Report
EGAF00004457397 fastq.gz 137.4 MB Report
EGAF00004457398 fastq.gz 115.8 MB Report
EGAF00004457399 fastq.gz 126.0 MB Report
EGAF00004457400 fastq.gz 82.0 MB Report
EGAF00004457401 fastq.gz 89.7 MB Report
EGAF00004457402 fastq.gz 208.4 MB Report
EGAF00004457403 fastq.gz 228.0 MB Report
EGAF00004457404 fastq.gz 276.1 MB Report
EGAF00004457405 fastq.gz 302.9 MB Report
EGAF00004457406 fastq.gz 97.4 MB Report
EGAF00004457407 fastq.gz 106.8 MB Report
EGAF00004457408 fastq.gz 125.0 MB Report
EGAF00004457409 fastq.gz 137.1 MB Report
EGAF00004457410 fastq.gz 59.8 MB Report
EGAF00004457411 fastq.gz 63.9 MB Report
EGAF00004457412 fastq.gz 109.2 MB Report
EGAF00004457413 fastq.gz 119.6 MB Report
EGAF00004457414 fastq.gz 78.9 MB Report
EGAF00004457415 fastq.gz 87.0 MB Report
EGAF00004457416 fastq.gz 120.5 MB Report
EGAF00004457417 fastq.gz 131.7 MB Report
EGAF00004457418 fastq.gz 158.6 MB Report
EGAF00004457419 fastq.gz 174.6 MB Report
EGAF00004457420 fastq.gz 72.6 MB Report
EGAF00004457421 fastq.gz 79.2 MB Report
EGAF00004457422 fastq.gz 64.0 MB Report
EGAF00004457423 fastq.gz 70.7 MB Report
EGAF00004457424 fastq.gz 61.2 MB Report
EGAF00004457425 fastq.gz 66.9 MB Report
EGAF00004457426 fastq.gz 122.4 MB Report
EGAF00004457427 fastq.gz 135.2 MB Report
EGAF00004457428 fastq.gz 119.0 MB Report
EGAF00004457429 fastq.gz 131.2 MB Report
EGAF00004457430 fastq.gz 114.0 MB Report
EGAF00004457431 fastq.gz 125.7 MB Report
EGAF00004457432 fastq.gz 124.1 MB Report
EGAF00004457433 fastq.gz 136.7 MB Report
EGAF00004457434 fastq.gz 183.6 MB Report
EGAF00004457435 fastq.gz 201.1 MB Report
EGAF00004457436 fastq.gz 180.7 MB Report
EGAF00004457437 fastq.gz 198.7 MB Report
EGAF00004457438 fastq.gz 195.5 MB Report
EGAF00004457439 fastq.gz 214.3 MB Report
EGAF00004457440 fastq.gz 252.0 MB Report
EGAF00004457441 fastq.gz 274.9 MB Report
EGAF00004457442 fastq.gz 129.2 MB Report
EGAF00004457443 fastq.gz 142.0 MB Report
EGAF00004457444 fastq.gz 103.5 MB Report
EGAF00004457445 fastq.gz 115.9 MB Report
EGAF00004457446 fastq.gz 129.0 MB Report
EGAF00004457447 fastq.gz 133.7 MB Report
EGAF00004457448 fastq.gz 66.7 MB Report
EGAF00004457449 fastq.gz 73.8 MB Report
EGAF00004457450 fastq.gz 91.3 MB Report
EGAF00004457451 fastq.gz 100.7 MB Report
EGAF00004457452 fastq.gz 62.4 MB Report
EGAF00004457453 fastq.gz 69.3 MB Report
EGAF00004457454 fastq.gz 106.1 MB Report
EGAF00004457455 fastq.gz 116.8 MB Report
EGAF00004457456 fastq.gz 68.9 MB Report
EGAF00004457457 fastq.gz 76.0 MB Report
EGAF00004457458 fastq.gz 300.6 MB Report
EGAF00004457459 fastq.gz 322.8 MB Report
EGAF00004457460 fastq.gz 219.1 MB Report
EGAF00004457461 fastq.gz 238.9 MB Report
EGAF00004457462 fastq.gz 143.7 MB Report
EGAF00004457463 fastq.gz 148.1 MB Report
EGAF00004457464 fastq.gz 87.8 MB Report
EGAF00004457465 fastq.gz 96.5 MB Report
EGAF00004457466 fastq.gz 345.4 MB Report
EGAF00004457467 fastq.gz 383.5 MB Report
EGAF00004457468 fastq.gz 119.9 MB Report
EGAF00004457469 fastq.gz 131.1 MB Report
EGAF00004457470 fastq.gz 87.0 MB Report
EGAF00004457471 fastq.gz 96.5 MB Report
EGAF00004457472 fastq.gz 120.1 MB Report
EGAF00004457473 fastq.gz 131.9 MB Report
EGAF00004457474 fastq.gz 214.7 MB Report
EGAF00004457475 fastq.gz 234.8 MB Report
EGAF00004457476 fastq.gz 225.9 MB Report
EGAF00004457477 fastq.gz 246.0 MB Report
EGAF00004457478 fastq.gz 93.5 MB Report
EGAF00004457479 fastq.gz 103.3 MB Report
EGAF00004457480 fastq.gz 79.7 MB Report
EGAF00004457481 fastq.gz 87.3 MB Report
EGAF00004457482 fastq.gz 107.8 MB Report
EGAF00004457483 fastq.gz 117.7 MB Report
EGAF00004457484 fastq.gz 60.7 MB Report
EGAF00004457485 fastq.gz 66.2 MB Report
EGAF00004457486 fastq.gz 546.2 MB Report
EGAF00004457487 fastq.gz 602.0 MB Report
EGAF00004457488 fastq.gz 155.0 MB Report
EGAF00004457489 fastq.gz 171.5 MB Report
EGAF00004457490 fastq.gz 238.7 MB Report
EGAF00004457491 fastq.gz 263.0 MB Report
EGAF00004457492 fastq.gz 137.7 MB Report
EGAF00004457493 fastq.gz 149.7 MB Report
EGAF00004457494 fastq.gz 204.0 MB Report
EGAF00004457495 fastq.gz 223.0 MB Report
EGAF00004457496 fastq.gz 143.8 MB Report
EGAF00004457497 fastq.gz 157.2 MB Report
EGAF00004457498 fastq.gz 126.3 MB Report
EGAF00004457499 fastq.gz 138.8 MB Report
EGAF00004457500 fastq.gz 334.1 MB Report
EGAF00004457501 fastq.gz 350.8 MB Report
EGAF00004457502 fastq.gz 137.5 MB Report
EGAF00004457503 fastq.gz 152.6 MB Report
EGAF00004457504 fastq.gz 272.2 MB Report
EGAF00004457505 fastq.gz 300.0 MB Report
EGAF00004457506 fastq.gz 192.7 MB Report
EGAF00004457507 fastq.gz 190.0 MB Report
EGAF00004457508 fastq.gz 149.4 MB Report
EGAF00004457509 fastq.gz 163.4 MB Report
EGAF00004457510 fastq.gz 209.1 MB Report
EGAF00004457511 fastq.gz 230.7 MB Report
EGAF00004457512 fastq.gz 280.6 MB Report
EGAF00004457513 fastq.gz 312.3 MB Report
EGAF00004457514 fastq.gz 227.0 MB Report
EGAF00004457515 fastq.gz 246.3 MB Report
EGAF00004457516 fastq.gz 123.3 MB Report
EGAF00004457517 fastq.gz 135.9 MB Report
EGAF00004457518 fastq.gz 215.7 MB Report
EGAF00004457519 fastq.gz 238.8 MB Report
EGAF00004457520 fastq.gz 9.2 MB Report
EGAF00004457521 fastq.gz 10.1 MB Report
EGAF00004457522 fastq.gz 259.1 MB Report
EGAF00004457523 fastq.gz 285.1 MB Report
EGAF00004457524 fastq.gz 152.9 MB Report
EGAF00004457525 fastq.gz 168.8 MB Report
EGAF00004457526 fastq.gz 149.0 MB Report
EGAF00004457527 fastq.gz 164.2 MB Report
EGAF00004457528 fastq.gz 138.1 MB Report
EGAF00004457529 fastq.gz 153.1 MB Report
EGAF00004457530 fastq.gz 413.6 MB Report
EGAF00004457531 fastq.gz 457.8 MB Report
EGAF00004457532 fastq.gz 98.3 MB Report
EGAF00004457533 fastq.gz 107.1 MB Report
EGAF00004457534 fastq.gz 187.6 MB Report
EGAF00004457535 fastq.gz 205.7 MB Report
EGAF00004457536 fastq.gz 151.8 MB Report
EGAF00004457537 fastq.gz 166.5 MB Report
EGAF00004457538 fastq.gz 64.3 MB Report
EGAF00004457539 fastq.gz 70.9 MB Report
EGAF00004457540 fastq.gz 62.1 MB Report
EGAF00004457541 fastq.gz 68.5 MB Report
EGAF00004457542 fastq.gz 76.3 MB Report
EGAF00004457543 fastq.gz 84.1 MB Report
EGAF00004457544 fastq.gz 144.7 MB Report
EGAF00004457545 fastq.gz 159.0 MB Report
EGAF00004457546 fastq.gz 111.6 MB Report
EGAF00004457547 fastq.gz 122.8 MB Report
EGAF00004457548 fastq.gz 85.6 MB Report
EGAF00004457549 fastq.gz 95.1 MB Report
EGAF00004457550 fastq.gz 198.3 MB Report
EGAF00004457551 fastq.gz 220.2 MB Report
EGAF00004457552 fastq.gz 519.6 MB Report
EGAF00004457553 fastq.gz 569.7 MB Report
EGAF00004457554 fastq.gz 103.1 MB Report
EGAF00004457555 fastq.gz 113.5 MB Report
EGAF00004457556 fastq.gz 178.1 MB Report
EGAF00004457557 fastq.gz 187.3 MB Report
EGAF00004457558 fastq.gz 242.2 MB Report
EGAF00004457559 fastq.gz 269.9 MB Report
EGAF00004457560 fastq.gz 79.2 MB Report
EGAF00004457561 fastq.gz 83.9 MB Report
EGAF00004457562 fastq.gz 168.5 MB Report
EGAF00004457563 fastq.gz 187.4 MB Report
EGAF00004457564 fastq.gz 82.5 MB Report
EGAF00004457565 fastq.gz 90.7 MB Report
EGAF00004457566 fastq.gz 51.6 MB Report
EGAF00004457567 fastq.gz 57.3 MB Report
EGAF00004457568 fastq.gz 166.5 MB Report
EGAF00004457569 fastq.gz 182.5 MB Report
EGAF00004457570 fastq.gz 350.1 MB Report
EGAF00004457571 fastq.gz 386.9 MB Report
EGAF00004457572 fastq.gz 136.5 MB Report
EGAF00004457573 fastq.gz 150.7 MB Report
EGAF00004457574 fastq.gz 106.5 MB Report
EGAF00004457575 fastq.gz 116.5 MB Report
EGAF00004457576 fastq.gz 105.8 MB Report
EGAF00004457577 fastq.gz 117.4 MB Report
EGAF00004457578 fastq.gz 93.7 MB Report
EGAF00004457579 fastq.gz 103.0 MB Report
EGAF00004457580 fastq.gz 104.6 MB Report
EGAF00004457581 fastq.gz 116.0 MB Report
EGAF00004457582 fastq.gz 142.1 MB Report
EGAF00004457583 fastq.gz 157.4 MB Report
EGAF00004457584 fastq.gz 121.8 MB Report
EGAF00004457585 fastq.gz 133.5 MB Report
EGAF00004457586 fastq.gz 153.5 MB Report
EGAF00004457587 fastq.gz 170.9 MB Report
EGAF00004457588 fastq.gz 120.9 MB Report
EGAF00004457589 fastq.gz 133.8 MB Report
EGAF00004457590 fastq.gz 35.7 MB Report
EGAF00004457591 fastq.gz 39.7 MB Report
EGAF00004457592 fastq.gz 74.1 MB Report
EGAF00004457593 fastq.gz 81.0 MB Report
EGAF00004457594 fastq.gz 70.5 MB Report
EGAF00004457595 fastq.gz 77.5 MB Report
EGAF00004457596 fastq.gz 196.5 MB Report
EGAF00004457597 fastq.gz 216.2 MB Report
EGAF00004457598 fastq.gz 137.5 MB Report
EGAF00004457599 fastq.gz 153.3 MB Report
EGAF00004457600 fastq.gz 70.0 MB Report
EGAF00004457601 fastq.gz 77.0 MB Report
EGAF00004457602 fastq.gz 89.1 MB Report
EGAF00004457603 fastq.gz 98.0 MB Report
EGAF00004457604 fastq.gz 94.8 MB Report
EGAF00004457605 fastq.gz 105.9 MB Report
EGAF00004457606 fastq.gz 63.4 MB Report
EGAF00004457607 fastq.gz 69.4 MB Report
EGAF00004457608 fastq.gz 194.5 MB Report
EGAF00004457609 fastq.gz 213.5 MB Report
EGAF00004457610 fastq.gz 56.2 MB Report
EGAF00004457611 fastq.gz 61.6 MB Report
EGAF00004457612 fastq.gz 95.1 MB Report
EGAF00004457613 fastq.gz 104.4 MB Report
EGAF00004457614 fastq.gz 149.0 MB Report
EGAF00004457615 fastq.gz 165.0 MB Report
EGAF00004457616 fastq.gz 58.8 MB Report
EGAF00004457617 fastq.gz 61.6 MB Report
EGAF00004457618 fastq.gz 65.0 MB Report
EGAF00004457619 fastq.gz 71.5 MB Report
EGAF00004457620 fastq.gz 80.4 MB Report
EGAF00004457621 fastq.gz 89.5 MB Report
EGAF00004457622 fastq.gz 205.4 MB Report
EGAF00004457623 fastq.gz 226.4 MB Report
EGAF00004457624 fastq.gz 92.0 MB Report
EGAF00004457625 fastq.gz 100.5 MB Report
EGAF00004457626 fastq.gz 88.5 MB Report
EGAF00004457627 fastq.gz 96.6 MB Report
EGAF00004457628 fastq.gz 85.2 MB Report
EGAF00004457629 fastq.gz 83.6 MB Report
324 Files (48.3 GB)