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Metagenomic sequences from human stool samples

​DNA extraction from human stool samples was performed at the Center for Microbiome Innovation (CMI) at University of California, San Diego. DNA sequencing libraries were prepared using Nextera XT (Illumina). Shotgun DNA sequencing was performed on the Illumina HiSeq4000 platform. Raw fastq reads were quality-checked. Skewer (version 0.2.2) was utilized with the paired-end mode. Human reads were identified and removed by Bowtie2 mapping against the human genome reference (hg19), followed by bam2fastq with --unaligned --no-aligned --force options.

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NAFLD Research Center Data Access Policy

Any user accessing data from the UCSD NAFLD Research Center must adhere to its Data Access Policy, which indicates that investigators who download from the European Genome-phenome Archive (EGA) repository should: • Not attempt to identify individual human research participants from whom the data were obtained. • Acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s) and the EGA data repositories through which the investigator accessed any data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004600 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004457306 fastq.gz 104.9 MB
EGAF00004457307 fastq.gz 114.6 MB
EGAF00004457308 fastq.gz 93.9 MB
EGAF00004457309 fastq.gz 103.7 MB
EGAF00004457310 fastq.gz 112.0 MB
EGAF00004457311 fastq.gz 124.7 MB
EGAF00004457312 fastq.gz 133.0 MB
EGAF00004457313 fastq.gz 146.1 MB
EGAF00004457314 fastq.gz 58.4 MB
EGAF00004457315 fastq.gz 64.1 MB
EGAF00004457316 fastq.gz 67.6 MB
EGAF00004457317 fastq.gz 73.7 MB
EGAF00004457318 fastq.gz 231.4 MB
EGAF00004457319 fastq.gz 254.9 MB
EGAF00004457320 fastq.gz 290.0 MB
EGAF00004457321 fastq.gz 319.7 MB
EGAF00004457322 fastq.gz 176.7 MB
EGAF00004457323 fastq.gz 195.1 MB
EGAF00004457324 fastq.gz 93.6 MB
EGAF00004457325 fastq.gz 102.3 MB
EGAF00004457326 fastq.gz 140.2 MB
EGAF00004457327 fastq.gz 153.5 MB
EGAF00004457328 fastq.gz 102.1 MB
EGAF00004457329 fastq.gz 113.3 MB
EGAF00004457330 fastq.gz 63.1 MB
EGAF00004457331 fastq.gz 69.2 MB
EGAF00004457332 fastq.gz 72.5 MB
EGAF00004457333 fastq.gz 80.0 MB
EGAF00004457334 fastq.gz 99.4 MB
EGAF00004457335 fastq.gz 106.7 MB
EGAF00004457336 fastq.gz 119.3 MB
EGAF00004457337 fastq.gz 130.7 MB
EGAF00004457338 fastq.gz 236.9 MB
EGAF00004457339 fastq.gz 263.5 MB
EGAF00004457340 fastq.gz 268.6 MB
EGAF00004457341 fastq.gz 295.1 MB
EGAF00004457342 fastq.gz 115.4 MB
EGAF00004457343 fastq.gz 126.5 MB
EGAF00004457344 fastq.gz 56.2 MB
EGAF00004457345 fastq.gz 61.8 MB
EGAF00004457346 fastq.gz 111.9 MB
EGAF00004457347 fastq.gz 124.7 MB
EGAF00004457348 fastq.gz 112.7 MB
EGAF00004457349 fastq.gz 123.6 MB
EGAF00004457350 fastq.gz 78.4 MB
EGAF00004457351 fastq.gz 85.9 MB
EGAF00004457352 fastq.gz 54.0 MB
EGAF00004457353 fastq.gz 58.6 MB
EGAF00004457354 fastq.gz 61.9 MB
EGAF00004457355 fastq.gz 67.9 MB
EGAF00004457356 fastq.gz 117.1 MB
EGAF00004457357 fastq.gz 129.2 MB
EGAF00004457358 fastq.gz 91.4 MB
EGAF00004457359 fastq.gz 101.0 MB
EGAF00004457360 fastq.gz 192.7 MB
EGAF00004457361 fastq.gz 209.6 MB
EGAF00004457362 fastq.gz 550.1 MB
EGAF00004457363 fastq.gz 605.8 MB
EGAF00004457364 fastq.gz 73.6 MB
EGAF00004457365 fastq.gz 80.9 MB
EGAF00004457366 fastq.gz 130.0 MB
EGAF00004457367 fastq.gz 142.3 MB
EGAF00004457368 fastq.gz 71.1 MB
EGAF00004457369 fastq.gz 78.0 MB
EGAF00004457370 fastq.gz 149.8 MB
EGAF00004457371 fastq.gz 163.5 MB
EGAF00004457372 fastq.gz 73.5 MB
EGAF00004457373 fastq.gz 80.0 MB
EGAF00004457374 fastq.gz 79.9 MB
EGAF00004457375 fastq.gz 87.5 MB
EGAF00004457376 fastq.gz 131.2 MB
EGAF00004457377 fastq.gz 143.8 MB
EGAF00004457378 fastq.gz 190.6 MB
EGAF00004457379 fastq.gz 212.2 MB
EGAF00004457380 fastq.gz 195.2 MB
EGAF00004457381 fastq.gz 215.3 MB
EGAF00004457382 fastq.gz 90.3 MB
EGAF00004457383 fastq.gz 99.6 MB
EGAF00004457384 fastq.gz 106.1 MB
EGAF00004457385 fastq.gz 116.6 MB
EGAF00004457386 fastq.gz 115.7 MB
EGAF00004457387 fastq.gz 127.2 MB
EGAF00004457388 fastq.gz 156.4 MB
EGAF00004457389 fastq.gz 172.8 MB
EGAF00004457390 fastq.gz 120.5 MB
EGAF00004457391 fastq.gz 132.1 MB
EGAF00004457392 fastq.gz 134.3 MB
EGAF00004457393 fastq.gz 146.4 MB
EGAF00004457394 fastq.gz 186.2 MB
EGAF00004457395 fastq.gz 204.7 MB
EGAF00004457396 fastq.gz 125.9 MB
EGAF00004457397 fastq.gz 137.4 MB
EGAF00004457398 fastq.gz 115.8 MB
EGAF00004457399 fastq.gz 126.0 MB
EGAF00004457400 fastq.gz 82.0 MB
EGAF00004457401 fastq.gz 89.7 MB
EGAF00004457402 fastq.gz 208.4 MB
EGAF00004457403 fastq.gz 228.0 MB
EGAF00004457404 fastq.gz 276.1 MB
EGAF00004457405 fastq.gz 302.9 MB
EGAF00004457406 fastq.gz 97.4 MB
EGAF00004457407 fastq.gz 106.8 MB
EGAF00004457408 fastq.gz 125.0 MB
EGAF00004457409 fastq.gz 137.1 MB
EGAF00004457410 fastq.gz 59.8 MB
EGAF00004457411 fastq.gz 63.9 MB
EGAF00004457412 fastq.gz 109.2 MB
EGAF00004457413 fastq.gz 119.6 MB
EGAF00004457414 fastq.gz 78.9 MB
EGAF00004457415 fastq.gz 87.0 MB
EGAF00004457416 fastq.gz 120.5 MB
EGAF00004457417 fastq.gz 131.7 MB
EGAF00004457418 fastq.gz 158.6 MB
EGAF00004457419 fastq.gz 174.6 MB
EGAF00004457420 fastq.gz 72.6 MB
EGAF00004457421 fastq.gz 79.2 MB
EGAF00004457422 fastq.gz 64.0 MB
EGAF00004457423 fastq.gz 70.7 MB
EGAF00004457424 fastq.gz 61.2 MB
EGAF00004457425 fastq.gz 66.9 MB
EGAF00004457426 fastq.gz 122.4 MB
EGAF00004457427 fastq.gz 135.2 MB
EGAF00004457428 fastq.gz 119.0 MB
EGAF00004457429 fastq.gz 131.2 MB
EGAF00004457430 fastq.gz 114.0 MB
EGAF00004457431 fastq.gz 125.7 MB
EGAF00004457432 fastq.gz 124.1 MB
EGAF00004457433 fastq.gz 136.7 MB
EGAF00004457434 fastq.gz 183.6 MB
EGAF00004457435 fastq.gz 201.1 MB
EGAF00004457436 fastq.gz 180.7 MB
EGAF00004457437 fastq.gz 198.7 MB
EGAF00004457438 fastq.gz 195.5 MB
EGAF00004457439 fastq.gz 214.3 MB
EGAF00004457440 fastq.gz 252.0 MB
EGAF00004457441 fastq.gz 274.9 MB
EGAF00004457442 fastq.gz 129.2 MB
EGAF00004457443 fastq.gz 142.0 MB
EGAF00004457444 fastq.gz 103.5 MB
EGAF00004457445 fastq.gz 115.9 MB
EGAF00004457446 fastq.gz 129.0 MB
EGAF00004457447 fastq.gz 133.7 MB
EGAF00004457448 fastq.gz 66.7 MB
EGAF00004457449 fastq.gz 73.8 MB
EGAF00004457450 fastq.gz 91.3 MB
EGAF00004457451 fastq.gz 100.7 MB
EGAF00004457452 fastq.gz 62.4 MB
EGAF00004457453 fastq.gz 69.3 MB
EGAF00004457454 fastq.gz 106.1 MB
EGAF00004457455 fastq.gz 116.8 MB
EGAF00004457456 fastq.gz 68.9 MB
EGAF00004457457 fastq.gz 76.0 MB
EGAF00004457458 fastq.gz 300.6 MB
EGAF00004457459 fastq.gz 322.8 MB
EGAF00004457460 fastq.gz 219.1 MB
EGAF00004457461 fastq.gz 238.9 MB
EGAF00004457462 fastq.gz 143.7 MB
EGAF00004457463 fastq.gz 148.1 MB
EGAF00004457464 fastq.gz 87.8 MB
EGAF00004457465 fastq.gz 96.5 MB
EGAF00004457466 fastq.gz 345.4 MB
EGAF00004457467 fastq.gz 383.5 MB
EGAF00004457468 fastq.gz 119.9 MB
EGAF00004457469 fastq.gz 131.1 MB
EGAF00004457470 fastq.gz 87.0 MB
EGAF00004457471 fastq.gz 96.5 MB
EGAF00004457472 fastq.gz 120.1 MB
EGAF00004457473 fastq.gz 131.9 MB
EGAF00004457474 fastq.gz 214.7 MB
EGAF00004457475 fastq.gz 234.8 MB
EGAF00004457476 fastq.gz 225.9 MB
EGAF00004457477 fastq.gz 246.0 MB
EGAF00004457478 fastq.gz 93.5 MB
EGAF00004457479 fastq.gz 103.3 MB
EGAF00004457480 fastq.gz 79.7 MB
EGAF00004457481 fastq.gz 87.3 MB
EGAF00004457482 fastq.gz 107.8 MB
EGAF00004457483 fastq.gz 117.7 MB
EGAF00004457484 fastq.gz 60.7 MB
EGAF00004457485 fastq.gz 66.2 MB
EGAF00004457486 fastq.gz 546.2 MB
EGAF00004457487 fastq.gz 602.0 MB
EGAF00004457488 fastq.gz 155.0 MB
EGAF00004457489 fastq.gz 171.5 MB
EGAF00004457490 fastq.gz 238.7 MB
EGAF00004457491 fastq.gz 263.0 MB
EGAF00004457492 fastq.gz 137.7 MB
EGAF00004457493 fastq.gz 149.7 MB
EGAF00004457494 fastq.gz 204.0 MB
EGAF00004457495 fastq.gz 223.0 MB
EGAF00004457496 fastq.gz 143.8 MB
EGAF00004457497 fastq.gz 157.2 MB
EGAF00004457498 fastq.gz 126.3 MB
EGAF00004457499 fastq.gz 138.8 MB
EGAF00004457500 fastq.gz 334.1 MB
EGAF00004457501 fastq.gz 350.8 MB
EGAF00004457502 fastq.gz 137.5 MB
EGAF00004457503 fastq.gz 152.6 MB
EGAF00004457504 fastq.gz 272.2 MB
EGAF00004457505 fastq.gz 300.0 MB
EGAF00004457506 fastq.gz 192.7 MB
EGAF00004457507 fastq.gz 190.0 MB
EGAF00004457508 fastq.gz 149.4 MB
EGAF00004457509 fastq.gz 163.4 MB
EGAF00004457510 fastq.gz 209.1 MB
EGAF00004457511 fastq.gz 230.7 MB
EGAF00004457512 fastq.gz 280.6 MB
EGAF00004457513 fastq.gz 312.3 MB
EGAF00004457514 fastq.gz 227.0 MB
EGAF00004457515 fastq.gz 246.3 MB
EGAF00004457516 fastq.gz 123.3 MB
EGAF00004457517 fastq.gz 135.9 MB
EGAF00004457518 fastq.gz 215.7 MB
EGAF00004457519 fastq.gz 238.8 MB
EGAF00004457520 fastq.gz 9.2 MB
EGAF00004457521 fastq.gz 10.1 MB
EGAF00004457522 fastq.gz 259.1 MB
EGAF00004457523 fastq.gz 285.1 MB
EGAF00004457524 fastq.gz 152.9 MB
EGAF00004457525 fastq.gz 168.8 MB
EGAF00004457526 fastq.gz 149.0 MB
EGAF00004457527 fastq.gz 164.2 MB
EGAF00004457528 fastq.gz 138.1 MB
EGAF00004457529 fastq.gz 153.1 MB
EGAF00004457530 fastq.gz 413.6 MB
EGAF00004457531 fastq.gz 457.8 MB
EGAF00004457532 fastq.gz 98.3 MB
EGAF00004457533 fastq.gz 107.1 MB
EGAF00004457534 fastq.gz 187.6 MB
EGAF00004457535 fastq.gz 205.7 MB
EGAF00004457536 fastq.gz 151.8 MB
EGAF00004457537 fastq.gz 166.5 MB
EGAF00004457538 fastq.gz 64.3 MB
EGAF00004457539 fastq.gz 70.9 MB
EGAF00004457540 fastq.gz 62.1 MB
EGAF00004457541 fastq.gz 68.5 MB
EGAF00004457542 fastq.gz 76.3 MB
EGAF00004457543 fastq.gz 84.1 MB
EGAF00004457544 fastq.gz 144.7 MB
EGAF00004457545 fastq.gz 159.0 MB
EGAF00004457546 fastq.gz 111.6 MB
EGAF00004457547 fastq.gz 122.8 MB
EGAF00004457548 fastq.gz 85.6 MB
EGAF00004457549 fastq.gz 95.1 MB
EGAF00004457550 fastq.gz 198.3 MB
EGAF00004457551 fastq.gz 220.2 MB
EGAF00004457552 fastq.gz 519.6 MB
EGAF00004457553 fastq.gz 569.7 MB
EGAF00004457554 fastq.gz 103.1 MB
EGAF00004457555 fastq.gz 113.5 MB
EGAF00004457556 fastq.gz 178.1 MB
EGAF00004457557 fastq.gz 187.3 MB
EGAF00004457558 fastq.gz 242.2 MB
EGAF00004457559 fastq.gz 269.9 MB
EGAF00004457560 fastq.gz 79.2 MB
EGAF00004457561 fastq.gz 83.9 MB
EGAF00004457562 fastq.gz 168.5 MB
EGAF00004457563 fastq.gz 187.4 MB
EGAF00004457564 fastq.gz 82.5 MB
EGAF00004457565 fastq.gz 90.7 MB
EGAF00004457566 fastq.gz 51.6 MB
EGAF00004457567 fastq.gz 57.3 MB
EGAF00004457568 fastq.gz 166.5 MB
EGAF00004457569 fastq.gz 182.5 MB
EGAF00004457570 fastq.gz 350.1 MB
EGAF00004457571 fastq.gz 386.9 MB
EGAF00004457572 fastq.gz 136.5 MB
EGAF00004457573 fastq.gz 150.7 MB
EGAF00004457574 fastq.gz 106.5 MB
EGAF00004457575 fastq.gz 116.5 MB
EGAF00004457576 fastq.gz 105.8 MB
EGAF00004457577 fastq.gz 117.4 MB
EGAF00004457578 fastq.gz 93.7 MB
EGAF00004457579 fastq.gz 103.0 MB
EGAF00004457580 fastq.gz 104.6 MB
EGAF00004457581 fastq.gz 116.0 MB
EGAF00004457582 fastq.gz 142.1 MB
EGAF00004457583 fastq.gz 157.4 MB
EGAF00004457584 fastq.gz 121.8 MB
EGAF00004457585 fastq.gz 133.5 MB
EGAF00004457586 fastq.gz 153.5 MB
EGAF00004457587 fastq.gz 170.9 MB
EGAF00004457588 fastq.gz 120.9 MB
EGAF00004457589 fastq.gz 133.8 MB
EGAF00004457590 fastq.gz 35.7 MB
EGAF00004457591 fastq.gz 39.7 MB
EGAF00004457592 fastq.gz 74.1 MB
EGAF00004457593 fastq.gz 81.0 MB
EGAF00004457594 fastq.gz 70.5 MB
EGAF00004457595 fastq.gz 77.5 MB
EGAF00004457596 fastq.gz 196.5 MB
EGAF00004457597 fastq.gz 216.2 MB
EGAF00004457598 fastq.gz 137.5 MB
EGAF00004457599 fastq.gz 153.3 MB
EGAF00004457600 fastq.gz 70.0 MB
EGAF00004457601 fastq.gz 77.0 MB
EGAF00004457602 fastq.gz 89.1 MB
EGAF00004457603 fastq.gz 98.0 MB
EGAF00004457604 fastq.gz 94.8 MB
EGAF00004457605 fastq.gz 105.9 MB
EGAF00004457606 fastq.gz 63.4 MB
EGAF00004457607 fastq.gz 69.4 MB
EGAF00004457608 fastq.gz 194.5 MB
EGAF00004457609 fastq.gz 213.5 MB
EGAF00004457610 fastq.gz 56.2 MB
EGAF00004457611 fastq.gz 61.6 MB
EGAF00004457612 fastq.gz 95.1 MB
EGAF00004457613 fastq.gz 104.4 MB
EGAF00004457614 fastq.gz 149.0 MB
EGAF00004457615 fastq.gz 165.0 MB
EGAF00004457616 fastq.gz 58.8 MB
EGAF00004457617 fastq.gz 61.6 MB
EGAF00004457618 fastq.gz 65.0 MB
EGAF00004457619 fastq.gz 71.5 MB
EGAF00004457620 fastq.gz 80.4 MB
EGAF00004457621 fastq.gz 89.5 MB
EGAF00004457622 fastq.gz 205.4 MB
EGAF00004457623 fastq.gz 226.4 MB
EGAF00004457624 fastq.gz 92.0 MB
EGAF00004457625 fastq.gz 100.5 MB
EGAF00004457626 fastq.gz 88.5 MB
EGAF00004457627 fastq.gz 96.6 MB
EGAF00004457628 fastq.gz 85.2 MB
EGAF00004457629 fastq.gz 83.6 MB
324 Files (48.3 GB)