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Breast implant-associated anaplastic large cell lymphoma shallow whole genome sequencing for copy number analysis and Whole exome sequencing data.

Shallow whole genome sequencing of 29 BIA-ALCL patients for copy number analysis and 24 Alk-negative ALCL samples as control cohort. 7 Whole exome sequencing BIA-ALCL samples.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003962 Other
ID File Type Size Located in
EGAF00004691322 fastq.gz 554.3 MB
EGAF00004691323 fastq.gz 409.1 MB
EGAF00004691324 fastq.gz 394.5 MB
EGAF00004691325 fastq.gz 501.4 MB
EGAF00004691326 fastq.gz 480.7 MB
EGAF00004691327 fastq.gz 438.8 MB
EGAF00004691328 fastq.gz 271.8 MB
EGAF00004691329 fastq.gz 581.0 MB
EGAF00004691330 fastq.gz 405.2 MB
EGAF00004691331 fastq.gz 461.0 MB
EGAF00004691332 fastq.gz 585.2 MB
EGAF00004691333 fastq.gz 1.3 GB
EGAF00004691334 fastq.gz 414.7 MB
EGAF00004691335 fastq.gz 1.6 GB
EGAF00004691336 fastq.gz 1.2 GB
EGAF00004691337 fastq.gz 638.8 MB
EGAF00004691338 fastq.gz 645.4 MB
EGAF00004691339 fastq.gz 501.7 MB
EGAF00004691340 fastq.gz 624.8 MB
EGAF00004691341 fastq.gz 823.9 MB
EGAF00004691342 fastq.gz 397.6 MB
EGAF00004691343 fastq.gz 926.2 MB
EGAF00004691344 fastq.gz 248.2 MB
EGAF00004691345 fastq.gz 719.5 MB
EGAF00004691346 fastq.gz 1.7 GB
EGAF00004691347 fastq.gz 1.1 GB
EGAF00004691348 fastq.gz 398.7 MB
EGAF00004691349 fastq.gz 1.0 GB
EGAF00004691350 fastq.gz 1.7 GB
EGAF00004691351 fastq.gz 540.9 MB
EGAF00004691352 fastq.gz 436.7 MB
EGAF00004691353 fastq.gz 898.6 MB
EGAF00004691354 fastq.gz 104.9 MB
EGAF00004691355 fastq.gz 1.1 GB
EGAF00004691356 fastq.gz 328.4 MB
EGAF00004691357 fastq.gz 1.0 GB
EGAF00004691358 fastq.gz 314.3 MB
EGAF00004691359 fastq.gz 329.1 MB
EGAF00004691360 fastq.gz 514.7 MB
EGAF00004691361 fastq.gz 265.7 MB
EGAF00004691362 fastq.gz 331.4 MB
EGAF00004691363 fastq.gz 674.1 MB
EGAF00004691364 fastq.gz 516.4 MB
EGAF00004691365 fastq.gz 971.4 MB
EGAF00004691366 fastq.gz 463.3 MB
EGAF00004691367 fastq.gz 552.4 MB
EGAF00004691368 fastq.gz 505.4 MB
EGAF00004691369 fastq.gz 409.1 MB
EGAF00004691370 fastq.gz 299.9 MB
EGAF00004691371 fastq.gz 315.2 MB
EGAF00004691372 fastq.gz 330.3 MB
EGAF00004691373 fastq.gz 466.3 MB
EGAF00004691374 fastq.gz 600.0 MB
EGAF00004691375 fastq.gz 354.3 MB
EGAF00004691376 fastq.gz 452.5 MB
EGAF00004691377 fastq.gz 433.8 MB
EGAF00004691378 fastq.gz 353.5 MB
EGAF00004691379 fastq.gz 443.1 MB
EGAF00004691380 fastq.gz 381.0 MB
EGAF00004691387 bam 8.1 GB
EGAF00004691388 bam 9.9 GB
EGAF00004691389 bam 7.4 GB
EGAF00004691390 bam 7.6 GB
EGAF00004691391 bam 8.7 GB
EGAF00004691392 bam 10.8 GB
EGAF00004691393 bam 11.0 GB
EGAF00004691394 bam 15.4 GB
EGAF00004691395 bam 12.0 GB
EGAF00004691396 bam 18.1 GB
EGAF00004691397 bam 15.2 GB
EGAF00004691398 bam 14.2 GB
EGAF00004691399 bam 16.8 GB
EGAF00004691400 bam 16.9 GB
73 Files (208.0 GB)