About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Breast implant-associated anaplastic large cell lymphoma shallow whole genome sequencing for copy number analysis and Whole exome sequencing data.

Shallow whole genome sequencing of 29 BIA-ALCL patients for copy number analysis and 24 Alk-negative ALCL samples as control cohort. 7 Whole exome sequencing BIA-ALCL samples.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003962 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004691322 fastq.gz 554.3 MB Report
EGAF00004691323 fastq.gz 409.1 MB Report
EGAF00004691324 fastq.gz 394.5 MB Report
EGAF00004691325 fastq.gz 501.4 MB Report
EGAF00004691326 fastq.gz 480.7 MB Report
EGAF00004691327 fastq.gz 438.8 MB Report
EGAF00004691328 fastq.gz 271.8 MB Report
EGAF00004691329 fastq.gz 581.0 MB Report
EGAF00004691330 fastq.gz 405.2 MB Report
EGAF00004691331 fastq.gz 461.0 MB Report
EGAF00004691332 fastq.gz 585.2 MB Report
EGAF00004691333 fastq.gz 1.3 GB Report
EGAF00004691334 fastq.gz 414.7 MB Report
EGAF00004691335 fastq.gz 1.6 GB Report
EGAF00004691336 fastq.gz 1.2 GB Report
EGAF00004691337 fastq.gz 638.8 MB Report
EGAF00004691338 fastq.gz 645.4 MB Report
EGAF00004691339 fastq.gz 501.7 MB Report
EGAF00004691340 fastq.gz 624.8 MB Report
EGAF00004691341 fastq.gz 823.9 MB Report
EGAF00004691342 fastq.gz 397.6 MB Report
EGAF00004691343 fastq.gz 926.2 MB Report
EGAF00004691344 fastq.gz 248.2 MB Report
EGAF00004691345 fastq.gz 719.5 MB Report
EGAF00004691346 fastq.gz 1.7 GB Report
EGAF00004691347 fastq.gz 1.1 GB Report
EGAF00004691348 fastq.gz 398.7 MB Report
EGAF00004691349 fastq.gz 1.0 GB Report
EGAF00004691350 fastq.gz 1.7 GB Report
EGAF00004691351 fastq.gz 540.9 MB Report
EGAF00004691352 fastq.gz 436.7 MB Report
EGAF00004691353 fastq.gz 898.6 MB Report
EGAF00004691354 fastq.gz 104.9 MB Report
EGAF00004691355 fastq.gz 1.1 GB Report
EGAF00004691356 fastq.gz 328.4 MB Report
EGAF00004691357 fastq.gz 1.0 GB Report
EGAF00004691358 fastq.gz 314.3 MB Report
EGAF00004691359 fastq.gz 329.1 MB Report
EGAF00004691360 fastq.gz 514.7 MB Report
EGAF00004691361 fastq.gz 265.7 MB Report
EGAF00004691362 fastq.gz 331.4 MB Report
EGAF00004691363 fastq.gz 674.1 MB Report
EGAF00004691364 fastq.gz 516.4 MB Report
EGAF00004691365 fastq.gz 971.4 MB Report
EGAF00004691366 fastq.gz 463.3 MB Report
EGAF00004691367 fastq.gz 552.4 MB Report
EGAF00004691368 fastq.gz 505.4 MB Report
EGAF00004691369 fastq.gz 409.1 MB Report
EGAF00004691370 fastq.gz 299.9 MB Report
EGAF00004691371 fastq.gz 315.2 MB Report
EGAF00004691372 fastq.gz 330.3 MB Report
EGAF00004691373 fastq.gz 466.3 MB Report
EGAF00004691374 fastq.gz 600.0 MB Report
EGAF00004691375 fastq.gz 354.3 MB Report
EGAF00004691376 fastq.gz 452.5 MB Report
EGAF00004691377 fastq.gz 433.8 MB Report
EGAF00004691378 fastq.gz 353.5 MB Report
EGAF00004691379 fastq.gz 443.1 MB Report
EGAF00004691380 fastq.gz 381.0 MB Report
EGAF00004691387 bam 8.1 GB Report
EGAF00004691388 bam 9.9 GB Report
EGAF00004691389 bam 7.4 GB Report
EGAF00004691390 bam 7.6 GB Report
EGAF00004691391 bam 8.7 GB Report
EGAF00004691392 bam 10.8 GB Report
EGAF00004691393 bam 11.0 GB Report
EGAF00004691394 bam 15.4 GB Report
EGAF00004691395 bam 12.0 GB Report
EGAF00004691396 bam 18.1 GB Report
EGAF00004691397 bam 15.2 GB Report
EGAF00004691398 bam 14.2 GB Report
EGAF00004691399 bam 16.8 GB Report
EGAF00004691400 bam 16.9 GB Report
73 Files (208.0 GB)