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Measurable residual disease in elderly acute myeloid leukemia: results from the PETHEMA-FLUGAZA phase III clinical trial

In our study, we hypothetyzed that CD34progenitors from cases with undetectable Minimal residual Disease (MRD) by flow cytometry would contain cells with leukemic-initiating-potential that could be identified on genetic (rather than phenotypic) grounds by Whole Exome Sequencing.

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DATA ACCESS AGREEMENT

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom Clínica Universidad de Navarra - Centro de Investigación Médica Aplicada (CUN-CIMA hereafter) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: CUN-CIMA and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical/computational methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify CUN-CIMA within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify CUN-CIMA prior to any significant changes to the protocol for the Project. 14. The User Institution will notify CUN-CIMA as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. CUN-CIMA may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than CUN-CIMA. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for CUN-CIMA Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) EGAS00001004574 Genetic characterization (through Whole Exome Sequencing) of Blasts and CD34+ hematopoietic progenitor cells (HPCs) from bone marrow of Acute Myeloid Leukemia patients. Name of project that created the dataset Measurable residual disease in elderly acute myeloid leukemia: results from the PETHEMA-FLUGAZA phase III clinical trial Names of other data producers/collaborators Catia Simoes, Bruno Paiva, David Martínez-Cuadrón, Juan-Miguel Bergua, Susana Vives, Lorenzo Algarra, Mar Tormo, Pilar Martinez, Josefina Serrano, Pilar Herrera, Fernando Ramos, Olga Salamero, Esperanza Lavilla, Cristina Gil, Jose-Luis Lopez, Maria-Belen Vidriales, Jorge Labrador, Jose-Francisco Falantes, María-José Sayas, Rosa Ayala, Joaquin Martinez-Lopez, Sara Villar, Maria-Jose Calasanz, Felipe Prosper, Jesús F. San-Miguel, Miguel Ángel Sanz, Pau Montesinos, on behalf of the PETHEMA (Programa para el Estudio de la Terapéutica en Hemopatías Malignas) cooperative study group Specific limitations on areas of research To advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical/computational methods that may be applied to such research. Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY CUN-CIMA intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. CUN-CIMA anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 12 months after these data were first made available on the relevant hosting database, unless CUN-CIMA has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with CUN-CIMA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004574 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004838897 fastq.gz 13.2 GB
EGAF00004838898 fastq.gz 13.8 GB
EGAF00004838899 fastq.gz 12.7 GB
EGAF00004838900 fastq.gz 13.1 GB
EGAF00004838901 fastq.gz 12.8 GB
EGAF00004838902 fastq.gz 13.1 GB
EGAF00004838903 fastq.gz 13.8 GB
EGAF00004838904 fastq.gz 14.2 GB
EGAF00004838905 fastq.gz 13.4 GB
EGAF00004838906 fastq.gz 14.0 GB
EGAF00004838907 fastq.gz 13.5 GB
EGAF00004838908 fastq.gz 14.0 GB
EGAF00004838909 fastq.gz 13.1 GB
EGAF00004838910 fastq.gz 13.9 GB
EGAF00004838911 fastq.gz 13.6 GB
EGAF00004838912 fastq.gz 14.1 GB
EGAF00004838913 fastq.gz 13.9 GB
EGAF00004838914 fastq.gz 14.5 GB
EGAF00004838915 fastq.gz 13.7 GB
EGAF00004838916 fastq.gz 14.3 GB
EGAF00004838917 fastq.gz 13.2 GB
EGAF00004838918 fastq.gz 13.5 GB
EGAF00004838919 fastq.gz 13.2 GB
EGAF00004838920 fastq.gz 13.7 GB
EGAF00004838921 fastq.gz 13.8 GB
EGAF00004838922 fastq.gz 14.4 GB
EGAF00004838923 fastq.gz 12.8 GB
EGAF00004838924 fastq.gz 13.1 GB
EGAF00004838925 fastq.gz 12.7 GB
EGAF00004838926 fastq.gz 13.2 GB
EGAF00004838927 fastq.gz 13.7 GB
EGAF00004838928 fastq.gz 14.4 GB
EGAF00004838929 fastq.gz 13.4 GB
EGAF00004838930 fastq.gz 14.2 GB
EGAF00004838931 fastq.gz 14.4 GB
EGAF00004838932 fastq.gz 15.0 GB
EGAF00004838933 fastq.gz 13.8 GB
EGAF00004838934 fastq.gz 14.3 GB
EGAF00004838935 fastq.gz 12.9 GB
EGAF00004838936 fastq.gz 13.6 GB
EGAF00004838937 fastq.gz 13.6 GB
EGAF00004838938 fastq.gz 14.3 GB
EGAF00004838939 fastq.gz 12.5 GB
EGAF00004838940 fastq.gz 13.1 GB
EGAF00004838941 fastq.gz 12.3 GB
EGAF00004838942 fastq.gz 12.6 GB
EGAF00004838943 fastq.gz 13.3 GB
EGAF00004838944 fastq.gz 14.1 GB
EGAF00004838945 fastq.gz 12.7 GB
EGAF00004838946 fastq.gz 13.2 GB
EGAF00004838947 fastq.gz 12.5 GB
EGAF00004838948 fastq.gz 13.2 GB
EGAF00004838949 fastq.gz 13.6 GB
EGAF00004838950 fastq.gz 13.9 GB
EGAF00004838951 fastq.gz 13.6 GB
EGAF00004838952 fastq.gz 14.1 GB
EGAF00004838953 fastq.gz 14.0 GB
EGAF00004838954 fastq.gz 15.7 GB
EGAF00004838955 fastq.gz 14.6 GB
EGAF00004838956 fastq.gz 15.1 GB
60 Files (817.7 GB)