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Fecal 16S rRNA gene sequencing

Human fecal 16S rRNA gene sequencing data from patients treated with combined anti-CTLA-4 and anti-PD-1 immunotherapy for advanced melanoma.

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Data access and use for 16S/WMS data.

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the ____ day of _________________, 20__ (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and _____________ (“Recipient”) on behalf of its investigator _____________ (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute (“Data”); Accession EGAS00001004885: Gut microbiome sequencing in patients receiving combination immune checkpoint blockade. This dataset contains paired-end sequencing fastq files for 54 human fecal 16S rRNA gene sequencing samples and 46 human fecal whole metagenome shotgun sequencing samples and associated phenotype metadata. All samples were obtained from patients with advanced melanoma who were treated with combined anti-CTLA-4 and anti-PD-1 checkpoint blockade immunotherapy. and Provider is willing to allow Recipient to access such Data from the EGA for the internal non-commercial research purposes of (“Purpose”); Use of the data is reserved for Non-Profit Institutions only and all findings must be made available to the public and available to the larger scientific community. Allowable Research Projects must be for cancer-related research. pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator and personnel under his immediate supervision at Recipient and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge ______________ (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time.   Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., Unit 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., Unit 1676 Office of Research Administration Attn: AVP, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: __________________________ __________________________ __________________________ __________________________ __________________________ 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. 10. This Agreement is via EGA mechanism.   [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Read and Understood: Recipient Scientist: Provider Scientist: Name: Name: Title: Title: Date: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004885 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004939257 fastq.bz2 6.1 MB
EGAF00004939258 fastq.bz2 7.1 MB
EGAF00004939261 fastq.bz2 2.8 MB
EGAF00004939262 fastq.bz2 3.4 MB
EGAF00004939263 fastq.bz2 2.3 MB
EGAF00004939264 fastq.bz2 3.2 MB
EGAF00004939265 fastq.bz2 3.7 MB
EGAF00004939266 fastq.bz2 4.9 MB
EGAF00004939267 fastq.bz2 3.4 MB
EGAF00004939268 fastq.bz2 4.3 MB
EGAF00004939273 fastq.bz2 4.1 MB
EGAF00004939274 fastq.bz2 5.3 MB
EGAF00004939277 fastq.bz2 3.7 MB
EGAF00004939278 fastq.bz2 4.9 MB
EGAF00004939295 fastq.bz2 2.6 MB
EGAF00004939296 fastq.bz2 3.5 MB
EGAF00004939297 fastq.bz2 1.4 MB
EGAF00004939298 fastq.bz2 1.9 MB
EGAF00004939301 fastq.bz2 5.6 MB
EGAF00004939302 fastq.bz2 7.1 MB
EGAF00004939303 fastq.bz2 3.5 MB
EGAF00004939304 fastq.bz2 4.2 MB
EGAF00004939305 fastq.bz2 3.3 MB
EGAF00004939306 fastq.bz2 4.3 MB
EGAF00004939307 fastq.bz2 4.2 MB
EGAF00004939308 fastq.bz2 5.1 MB
EGAF00004939309 fastq.bz2 3.6 MB
EGAF00004939310 fastq.bz2 4.5 MB
EGAF00004939327 fastq.bz2 4.6 MB
EGAF00004939328 fastq.bz2 5.8 MB
EGAF00004939329 fastq.bz2 3.2 MB
EGAF00004939330 fastq.bz2 3.7 MB
EGAF00004939333 fastq.bz2 3.5 MB
EGAF00004939334 fastq.bz2 4.3 MB
EGAF00004939335 fastq.bz2 4.1 MB
EGAF00004939336 fastq.bz2 5.3 MB
EGAF00004939351 fastq.bz2 3.9 MB
EGAF00004939352 fastq.bz2 5.1 MB
EGAF00004939353 fastq.bz2 3.8 MB
EGAF00004939354 fastq.bz2 4.7 MB
EGAF00004939355 fastq.bz2 6.9 MB
EGAF00004939356 fastq.bz2 8.6 MB
EGAF00004939357 fastq.bz2 4.3 MB
EGAF00004939358 fastq.bz2 5.4 MB
EGAF00004939359 fastq.bz2 2.7 MB
EGAF00004939360 fastq.bz2 3.3 MB
EGAF00004939361 fastq.bz2 4.0 MB
EGAF00004939362 fastq.bz2 4.8 MB
EGAF00004939379 fastq.bz2 3.2 MB
EGAF00004939380 fastq.bz2 4.7 MB
EGAF00004939381 fastq.bz2 5.4 MB
EGAF00004939382 fastq.bz2 6.9 MB
EGAF00004939383 fastq.bz2 4.1 MB
EGAF00004939384 fastq.bz2 5.1 MB
EGAF00004939385 fastq.bz2 3.6 MB
EGAF00004939386 fastq.bz2 4.9 MB
EGAF00004939387 fastq.bz2 4.3 MB
EGAF00004939388 fastq.bz2 5.3 MB
EGAF00004939391 fastq.bz2 4.0 MB
EGAF00004939392 fastq.bz2 4.8 MB
EGAF00004939393 fastq.bz2 3.1 MB
EGAF00004939394 fastq.bz2 4.2 MB
EGAF00004939395 fastq.bz2 3.4 MB
EGAF00004939396 fastq.bz2 4.7 MB
EGAF00004939397 fastq.bz2 1.8 MB
EGAF00004939398 fastq.bz2 2.5 MB
EGAF00004939399 fastq.bz2 3.6 MB
EGAF00004939400 fastq.bz2 5.1 MB
EGAF00004939401 fastq.bz2 3.1 MB
EGAF00004939402 fastq.bz2 4.1 MB
EGAF00004939403 fastq.bz2 4.0 MB
EGAF00004939404 fastq.bz2 5.0 MB
EGAF00004939405 fastq.bz2 2.5 MB
EGAF00004939406 fastq.bz2 3.0 MB
EGAF00004939407 fastq.bz2 3.1 MB
EGAF00004939408 fastq.bz2 3.9 MB
EGAF00004939409 fastq.bz2 2.5 MB
EGAF00004939410 fastq.bz2 3.1 MB
EGAF00004939411 fastq.bz2 7.0 MB
EGAF00004939412 fastq.bz2 9.8 MB
EGAF00004939413 fastq.bz2 6.8 MB
EGAF00004939414 fastq.bz2 9.8 MB
EGAF00004939415 fastq.bz2 6.4 MB
EGAF00004939416 fastq.bz2 8.8 MB
EGAF00004939417 fastq.bz2 7.0 MB
EGAF00004939418 fastq.bz2 9.6 MB
EGAF00004939419 fastq.bz2 3.9 MB
EGAF00004939420 fastq.bz2 4.8 MB
EGAF00004939421 fastq.bz2 2.9 MB
EGAF00004939422 fastq.bz2 3.5 MB
EGAF00004939423 fastq.bz2 4.1 MB
EGAF00004939424 fastq.bz2 4.8 MB
EGAF00004939425 fastq.bz2 2.4 MB
EGAF00004939426 fastq.bz2 2.9 MB
EGAF00004939437 fastq.bz2 3.1 MB
EGAF00004939438 fastq.bz2 3.8 MB
EGAF00004939445 fastq.bz2 2.5 MB
EGAF00004939446 fastq.bz2 3.3 MB
EGAF00004939447 fastq.bz2 4.0 MB
EGAF00004939448 fastq.bz2 5.1 MB
EGAF00004939449 fastq.bz2 3.1 MB
EGAF00004939450 fastq.bz2 3.7 MB
EGAF00004939451 fastq.bz2 3.4 MB
EGAF00004939452 fastq.bz2 4.3 MB
EGAF00004939453 fastq.bz2 3.8 MB
EGAF00004939454 fastq.bz2 4.9 MB
EGAF00004939455 fastq.bz2 3.3 MB
EGAF00004939456 fastq.bz2 4.5 MB
108 Files (472.2 MB)