Dataset

Resequencing (MIPS) of candidate genes for Keratoconus (2020)

Dataset ID Technology Samples
EGAD00001006825 NextSeq 500 1555

Dataset Description

The dataset consists of the BAM-files of 745 patients and 810 controls (retained after quality control) of a set of 34 candidate genes obtained after targeted enrichment via Molecular Inversion Probes (MIPS) technology. The sequencing was performed on the NextSeq 500 (Illumina, CA, USA) using custom sequencing and index primers in three 2 x 76 bp, dual indexed runs using a 150 cycles High-Output Illumina kit (Illumina, CA, USA). Alignment of the fastq reads to the human genome was performed using BWA (v0.7.4).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Keratoconus MIPS Data Access Committee
Contact person: Arvid Suls
Email: arvid [dot] suls [at] uantwerpen [dot] be
More details: EGAC00001001883

Downloads

You don't have access to the download section.