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Comprehensive RNA repository of tissue and plasma from patients with esophageal cancer or precursor lesions

A comprehensive RNA repository (both coding and non-coding) from 17 patients diagnosed with esophageal adenocarcinoma, high-grade dysplastic or non-dysplastic Barrett’s esophagus. Per patient, a blood plasma sample, and a healthy esophageal and disease tissue sample were collected. This dataset includes both mRNA and small RNA sequencing data (fastq.gz files) of all tissue and plasma samples. In total,102 RNA-seq libraries from 51 samples (17 plasma and 34 tissue samples) were sequenced (plasma mRNA libraries were sequenced twice).

Request Access

Policy for the comprehensive RNA repository of tissue and plasma from patients with esophageal adenocarcinoma or precursor lesions, from the Center of Medical Genetics Ghent.

Data requests are handled by the Center for Medical Genetics Ghent and the legal department of Ghent University. A data transfer agreement will have to be signed in order for the data to be transferred.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004939 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004965173 fastq.gz 916.2 MB
EGAF00004965174 fastq.gz 948.6 MB
EGAF00004965175 fastq.gz 611.5 MB
EGAF00004965176 fastq.gz 642.3 MB
EGAF00004965177 fastq.gz 811.4 MB
EGAF00004965178 fastq.gz 1.3 GB
EGAF00004965179 fastq.gz 1.4 GB
EGAF00004965180 fastq.gz 848.8 MB
EGAF00004965181 fastq.gz 1.3 GB
EGAF00004965182 fastq.gz 1.4 GB
EGAF00004965183 fastq.gz 1.3 GB
EGAF00004965184 fastq.gz 1.4 GB
EGAF00004965185 fastq.gz 1.4 GB
EGAF00004965186 fastq.gz 1.5 GB
EGAF00004965187 fastq.gz 774.3 MB
EGAF00004965188 fastq.gz 1.5 GB
EGAF00004965189 fastq.gz 1.5 GB
EGAF00004965190 fastq.gz 800.6 MB
EGAF00004965191 fastq.gz 671.1 MB
EGAF00004965192 fastq.gz 727.1 MB
EGAF00004965193 fastq.gz 606.1 MB
EGAF00004965194 fastq.gz 642.9 MB
EGAF00004965195 fastq.gz 630.6 MB
EGAF00004965196 fastq.gz 531.6 MB
EGAF00004965197 fastq.gz 1.4 GB
EGAF00004965198 fastq.gz 1.4 GB
EGAF00004965199 fastq.gz 593.4 MB
EGAF00004965200 fastq.gz 842.8 MB
EGAF00004965201 fastq.gz 878.1 MB
EGAF00004965202 fastq.gz 829.8 MB
EGAF00004965203 fastq.gz 859.0 MB
EGAF00004965204 fastq.gz 567.4 MB
EGAF00004965205 fastq.gz 597.2 MB
EGAF00004965206 fastq.gz 1.3 GB
EGAF00004965207 fastq.gz 1.4 GB
EGAF00004965208 fastq.gz 1.3 GB
EGAF00004965209 fastq.gz 1.4 GB
EGAF00004965210 fastq.gz 816.6 MB
EGAF00004965211 fastq.gz 931.8 MB
EGAF00004965212 fastq.gz 845.0 MB
EGAF00004965213 fastq.gz 1.4 GB
EGAF00004965214 fastq.gz 1.5 GB
EGAF00004965215 fastq.gz 1.5 GB
EGAF00004965216 fastq.gz 1.6 GB
EGAF00004965217 fastq.gz 761.7 MB
EGAF00004965218 fastq.gz 788.9 MB
EGAF00004965219 fastq.gz 1.3 GB
EGAF00004965220 fastq.gz 1.4 GB
EGAF00004965221 fastq.gz 571.6 MB
EGAF00004965222 fastq.gz 626.7 MB
EGAF00004965223 fastq.gz 688.2 MB
EGAF00004965224 fastq.gz 725.4 MB
EGAF00004965225 fastq.gz 878.8 MB
EGAF00004965226 fastq.gz 907.7 MB
EGAF00004965227 fastq.gz 615.9 MB
EGAF00004965228 fastq.gz 647.1 MB
EGAF00004965229 fastq.gz 799.4 MB
EGAF00004965230 fastq.gz 837.5 MB
EGAF00004965231 fastq.gz 1.3 GB
EGAF00004965232 fastq.gz 1.3 GB
EGAF00004965233 fastq.gz 564.6 MB
EGAF00004965234 fastq.gz 600.0 MB
EGAF00004965235 fastq.gz 1.5 GB
EGAF00004965236 fastq.gz 1.6 GB
EGAF00004965237 fastq.gz 530.2 MB
EGAF00004965238 fastq.gz 552.3 MB
EGAF00004965239 fastq.gz 1.6 GB
EGAF00004965240 fastq.gz 1.7 GB
EGAF00004965241 fastq.gz 1.5 GB
EGAF00004965242 fastq.gz 1.5 GB
EGAF00004965243 fastq.gz 565.7 MB
EGAF00004965244 fastq.gz 1.5 GB
EGAF00004965245 fastq.gz 1.6 GB
EGAF00004965246 fastq.gz 620.8 MB
EGAF00004965247 fastq.gz 664.9 MB
EGAF00004965248 fastq.gz 909.6 MB
EGAF00004965249 fastq.gz 571.9 MB
EGAF00004965250 fastq.gz 594.1 MB
EGAF00004965251 fastq.gz 869.8 MB
EGAF00004965252 fastq.gz 917.0 MB
EGAF00004965253 fastq.gz 948.8 MB
EGAF00004965254 fastq.gz 736.4 MB
EGAF00004965255 fastq.gz 774.1 MB
EGAF00004965256 fastq.gz 733.9 MB
EGAF00004965257 fastq.gz 777.0 MB
EGAF00004965258 fastq.gz 1.3 GB
EGAF00004965259 fastq.gz 1.4 GB
EGAF00004965260 fastq.gz 1.5 GB
EGAF00004965261 fastq.gz 1.5 GB
EGAF00004965262 fastq.gz 1.4 GB
EGAF00004965263 fastq.gz 1.4 GB
EGAF00004965264 fastq.gz 1.4 GB
EGAF00004965265 fastq.gz 1.4 GB
EGAF00004965266 fastq.gz 1.4 GB
EGAF00004965267 fastq.gz 1.4 GB
EGAF00004965268 fastq.gz 689.4 MB
EGAF00004965269 fastq.gz 725.4 MB
EGAF00004965270 fastq.gz 1.5 GB
EGAF00004965271 fastq.gz 1.6 GB
EGAF00004965272 fastq.gz 384.0 MB
EGAF00004965273 fastq.gz 399.8 MB
EGAF00004965274 fastq.gz 1.3 GB
EGAF00004965275 fastq.gz 1.4 GB
EGAF00004965276 fastq.gz 1.4 GB
EGAF00004965277 fastq.gz 1.4 GB
EGAF00004965278 fastq.gz 672.2 MB
EGAF00004965279 fastq.gz 707.7 MB
EGAF00004965280 fastq.gz 849.4 MB
EGAF00004965281 fastq.gz 878.6 MB
EGAF00004965282 fastq.gz 937.8 MB
EGAF00004965283 fastq.gz 635.8 MB
EGAF00004965284 fastq.gz 671.4 MB
EGAF00004965285 fastq.gz 676.5 MB
EGAF00004965286 fastq.gz 799.7 MB
EGAF00004965287 fastq.gz 827.5 MB
EGAF00004965288 fastq.gz 511.4 MB
EGAF00004965289 fastq.gz 771.3 MB
EGAF00004965290 fastq.gz 801.2 MB
EGAF00004965291 fastq.gz 613.0 MB
EGAF00004965292 fastq.gz 649.5 MB
EGAF00004965293 fastq.gz 1.4 GB
EGAF00004965294 fastq.gz 1.5 GB
EGAF00004965295 fastq.gz 611.8 MB
EGAF00004965296 fastq.gz 1.2 GB
EGAF00004965297 fastq.gz 1.3 GB
EGAF00004965298 fastq.gz 500.2 MB
EGAF00004965299 fastq.gz 1.6 GB
EGAF00004965300 fastq.gz 1.6 GB
EGAF00004965301 fastq.gz 812.1 MB
EGAF00004965302 fastq.gz 830.7 MB
EGAF00004965303 fastq.gz 1.3 GB
EGAF00004965304 fastq.gz 1.3 GB
EGAF00004965305 fastq.gz 1.3 GB
EGAF00004965306 fastq.gz 1.4 GB
EGAF00004965307 fastq.gz 794.5 MB
EGAF00004965308 fastq.gz 1.2 GB
EGAF00004965309 fastq.gz 1.3 GB
EGAF00004965310 fastq.gz 870.1 MB
EGAF00004965311 fastq.gz 581.3 MB
EGAF00004965312 fastq.gz 1.4 GB
EGAF00004965313 fastq.gz 1.5 GB
EGAF00004965314 fastq.gz 850.1 MB
EGAF00004965315 fastq.gz 928.2 MB
EGAF00004965316 fastq.gz 803.9 MB
EGAF00004965317 fastq.gz 686.5 MB
EGAF00004965318 fastq.gz 731.3 MB
EGAF00004965319 fastq.gz 569.4 MB
EGAF00004965320 fastq.gz 496.5 MB
EGAF00004965321 fastq.gz 651.0 MB
EGAF00004965322 fastq.gz 679.6 MB
EGAF00004965323 fastq.gz 537.5 MB
EGAF00004965324 fastq.gz 941.9 MB
EGAF00004965325 fastq.gz 874.3 MB
EGAF00004965326 fastq.gz 1.0 GB
EGAF00004965327 fastq.gz 844.6 MB
EGAF00004965328 fastq.gz 913.0 MB
EGAF00004965329 fastq.gz 1.1 GB
EGAF00004965330 fastq.gz 648.7 MB
EGAF00004965331 fastq.gz 683.4 MB
EGAF00004965332 fastq.gz 828.0 MB
EGAF00004965333 fastq.gz 858.6 MB
EGAF00004965334 fastq.gz 1.4 GB
EGAF00004965335 fastq.gz 1.5 GB
EGAF00004965336 fastq.gz 1.4 GB
EGAF00004965337 fastq.gz 1.5 GB
EGAF00004965338 fastq.gz 861.5 MB
EGAF00004965339 fastq.gz 575.7 MB
EGAF00004965340 fastq.gz 725.6 MB
EGAF00004965341 fastq.gz 985.6 MB
EGAF00004965342 fastq.gz 1.3 GB
EGAF00004965343 fastq.gz 863.4 MB
EGAF00004965344 fastq.gz 713.6 MB
EGAF00004965345 fastq.gz 963.0 MB
EGAF00004965346 fastq.gz 438.8 MB
EGAF00004965347 fastq.gz 526.5 MB
EGAF00004965348 fastq.gz 515.1 MB
EGAF00004965349 fastq.gz 696.9 MB
EGAF00004965350 fastq.gz 1.5 GB
EGAF00004965351 fastq.gz 1.5 GB
EGAF00004965352 fastq.gz 738.1 MB
EGAF00004965353 fastq.gz 756.9 MB
EGAF00004965354 fastq.gz 778.7 MB
EGAF00004965355 fastq.gz 703.2 MB
EGAF00004965356 fastq.gz 747.6 MB
EGAF00004965357 fastq.gz 552.0 MB
185 Files (182.7 GB)