About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Comprehensive RNA repository of tissue and plasma from patients with esophageal cancer or precursor lesions

A comprehensive RNA repository (both coding and non-coding) from 17 patients diagnosed with esophageal adenocarcinoma, high-grade dysplastic or non-dysplastic Barrett’s esophagus. Per patient, a blood plasma sample, and a healthy esophageal and disease tissue sample were collected. This dataset includes both mRNA and small RNA sequencing data (fastq.gz files) of all tissue and plasma samples. In total,102 RNA-seq libraries from 51 samples (17 plasma and 34 tissue samples) were sequenced (plasma mRNA libraries were sequenced twice).

Request Access

Policy for the comprehensive RNA repository of tissue and plasma from patients with esophageal adenocarcinoma or precursor lesions, from the Center of Medical Genetics Ghent.

Data requests are handled by the Center for Medical Genetics Ghent and the legal department of Ghent University. A data transfer agreement will have to be signed in order for the data to be transferred.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004939 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004965173 fastq.gz 916.2 MB Report
EGAF00004965174 fastq.gz 948.6 MB Report
EGAF00004965175 fastq.gz 611.5 MB Report
EGAF00004965176 fastq.gz 642.3 MB Report
EGAF00004965177 fastq.gz 811.4 MB Report
EGAF00004965178 fastq.gz 1.3 GB Report
EGAF00004965179 fastq.gz 1.4 GB Report
EGAF00004965180 fastq.gz 848.8 MB Report
EGAF00004965181 fastq.gz 1.3 GB Report
EGAF00004965182 fastq.gz 1.4 GB Report
EGAF00004965183 fastq.gz 1.3 GB Report
EGAF00004965184 fastq.gz 1.4 GB Report
EGAF00004965185 fastq.gz 1.4 GB Report
EGAF00004965186 fastq.gz 1.5 GB Report
EGAF00004965187 fastq.gz 774.3 MB Report
EGAF00004965188 fastq.gz 1.5 GB Report
EGAF00004965189 fastq.gz 1.5 GB Report
EGAF00004965190 fastq.gz 800.6 MB Report
EGAF00004965191 fastq.gz 671.1 MB Report
EGAF00004965192 fastq.gz 727.1 MB Report
EGAF00004965193 fastq.gz 606.1 MB Report
EGAF00004965194 fastq.gz 642.9 MB Report
EGAF00004965195 fastq.gz 630.6 MB Report
EGAF00004965196 fastq.gz 531.6 MB Report
EGAF00004965197 fastq.gz 1.4 GB Report
EGAF00004965198 fastq.gz 1.4 GB Report
EGAF00004965199 fastq.gz 593.4 MB Report
EGAF00004965200 fastq.gz 842.8 MB Report
EGAF00004965201 fastq.gz 878.1 MB Report
EGAF00004965202 fastq.gz 829.8 MB Report
EGAF00004965203 fastq.gz 859.0 MB Report
EGAF00004965204 fastq.gz 567.4 MB Report
EGAF00004965205 fastq.gz 597.2 MB Report
EGAF00004965206 fastq.gz 1.3 GB Report
EGAF00004965207 fastq.gz 1.4 GB Report
EGAF00004965208 fastq.gz 1.3 GB Report
EGAF00004965209 fastq.gz 1.4 GB Report
EGAF00004965210 fastq.gz 816.6 MB Report
EGAF00004965211 fastq.gz 931.8 MB Report
EGAF00004965212 fastq.gz 845.0 MB Report
EGAF00004965213 fastq.gz 1.4 GB Report
EGAF00004965214 fastq.gz 1.5 GB Report
EGAF00004965215 fastq.gz 1.5 GB Report
EGAF00004965216 fastq.gz 1.6 GB Report
EGAF00004965217 fastq.gz 761.7 MB Report
EGAF00004965218 fastq.gz 788.9 MB Report
EGAF00004965219 fastq.gz 1.3 GB Report
EGAF00004965220 fastq.gz 1.4 GB Report
EGAF00004965221 fastq.gz 571.6 MB Report
EGAF00004965222 fastq.gz 626.7 MB Report
EGAF00004965223 fastq.gz 688.2 MB Report
EGAF00004965224 fastq.gz 725.4 MB Report
EGAF00004965225 fastq.gz 878.8 MB Report
EGAF00004965226 fastq.gz 907.7 MB Report
EGAF00004965227 fastq.gz 615.9 MB Report
EGAF00004965228 fastq.gz 647.1 MB Report
EGAF00004965229 fastq.gz 799.4 MB Report
EGAF00004965230 fastq.gz 837.5 MB Report
EGAF00004965231 fastq.gz 1.3 GB Report
EGAF00004965232 fastq.gz 1.3 GB Report
EGAF00004965233 fastq.gz 564.6 MB Report
EGAF00004965234 fastq.gz 600.0 MB Report
EGAF00004965235 fastq.gz 1.5 GB Report
EGAF00004965236 fastq.gz 1.6 GB Report
EGAF00004965237 fastq.gz 530.2 MB Report
EGAF00004965238 fastq.gz 552.3 MB Report
EGAF00004965239 fastq.gz 1.6 GB Report
EGAF00004965240 fastq.gz 1.7 GB Report
EGAF00004965241 fastq.gz 1.5 GB Report
EGAF00004965242 fastq.gz 1.5 GB Report
EGAF00004965243 fastq.gz 565.7 MB Report
EGAF00004965244 fastq.gz 1.5 GB Report
EGAF00004965245 fastq.gz 1.6 GB Report
EGAF00004965246 fastq.gz 620.8 MB Report
EGAF00004965247 fastq.gz 664.9 MB Report
EGAF00004965248 fastq.gz 909.6 MB Report
EGAF00004965249 fastq.gz 571.9 MB Report
EGAF00004965250 fastq.gz 594.1 MB Report
EGAF00004965251 fastq.gz 869.8 MB Report
EGAF00004965252 fastq.gz 917.0 MB Report
EGAF00004965253 fastq.gz 948.8 MB Report
EGAF00004965254 fastq.gz 736.4 MB Report
EGAF00004965255 fastq.gz 774.1 MB Report
EGAF00004965256 fastq.gz 733.9 MB Report
EGAF00004965257 fastq.gz 777.0 MB Report
EGAF00004965258 fastq.gz 1.3 GB Report
EGAF00004965259 fastq.gz 1.4 GB Report
EGAF00004965260 fastq.gz 1.5 GB Report
EGAF00004965261 fastq.gz 1.5 GB Report
EGAF00004965262 fastq.gz 1.4 GB Report
EGAF00004965263 fastq.gz 1.4 GB Report
EGAF00004965264 fastq.gz 1.4 GB Report
EGAF00004965265 fastq.gz 1.4 GB Report
EGAF00004965266 fastq.gz 1.4 GB Report
EGAF00004965267 fastq.gz 1.4 GB Report
EGAF00004965268 fastq.gz 689.4 MB Report
EGAF00004965269 fastq.gz 725.4 MB Report
EGAF00004965270 fastq.gz 1.5 GB Report
EGAF00004965271 fastq.gz 1.6 GB Report
EGAF00004965272 fastq.gz 384.0 MB Report
EGAF00004965273 fastq.gz 399.8 MB Report
EGAF00004965274 fastq.gz 1.3 GB Report
EGAF00004965275 fastq.gz 1.4 GB Report
EGAF00004965276 fastq.gz 1.4 GB Report
EGAF00004965277 fastq.gz 1.4 GB Report
EGAF00004965278 fastq.gz 672.2 MB Report
EGAF00004965279 fastq.gz 707.7 MB Report
EGAF00004965280 fastq.gz 849.4 MB Report
EGAF00004965281 fastq.gz 878.6 MB Report
EGAF00004965282 fastq.gz 937.8 MB Report
EGAF00004965283 fastq.gz 635.8 MB Report
EGAF00004965284 fastq.gz 671.4 MB Report
EGAF00004965285 fastq.gz 676.5 MB Report
EGAF00004965286 fastq.gz 799.7 MB Report
EGAF00004965287 fastq.gz 827.5 MB Report
EGAF00004965288 fastq.gz 511.4 MB Report
EGAF00004965289 fastq.gz 771.3 MB Report
EGAF00004965290 fastq.gz 801.2 MB Report
EGAF00004965291 fastq.gz 613.0 MB Report
EGAF00004965292 fastq.gz 649.5 MB Report
EGAF00004965293 fastq.gz 1.4 GB Report
EGAF00004965294 fastq.gz 1.5 GB Report
EGAF00004965295 fastq.gz 611.8 MB Report
EGAF00004965296 fastq.gz 1.2 GB Report
EGAF00004965297 fastq.gz 1.3 GB Report
EGAF00004965298 fastq.gz 500.2 MB Report
EGAF00004965299 fastq.gz 1.6 GB Report
EGAF00004965300 fastq.gz 1.6 GB Report
EGAF00004965301 fastq.gz 812.1 MB Report
EGAF00004965302 fastq.gz 830.7 MB Report
EGAF00004965303 fastq.gz 1.3 GB Report
EGAF00004965304 fastq.gz 1.3 GB Report
EGAF00004965305 fastq.gz 1.3 GB Report
EGAF00004965306 fastq.gz 1.4 GB Report
EGAF00004965307 fastq.gz 794.5 MB Report
EGAF00004965308 fastq.gz 1.2 GB Report
EGAF00004965309 fastq.gz 1.3 GB Report
EGAF00004965310 fastq.gz 870.1 MB Report
EGAF00004965311 fastq.gz 581.3 MB Report
EGAF00004965312 fastq.gz 1.4 GB Report
EGAF00004965313 fastq.gz 1.5 GB Report
EGAF00004965314 fastq.gz 850.1 MB Report
EGAF00004965315 fastq.gz 928.2 MB Report
EGAF00004965316 fastq.gz 803.9 MB Report
EGAF00004965317 fastq.gz 686.5 MB Report
EGAF00004965318 fastq.gz 731.3 MB Report
EGAF00004965319 fastq.gz 569.4 MB Report
EGAF00004965320 fastq.gz 496.5 MB Report
EGAF00004965321 fastq.gz 651.0 MB Report
EGAF00004965322 fastq.gz 679.6 MB Report
EGAF00004965323 fastq.gz 537.5 MB Report
EGAF00004965324 fastq.gz 941.9 MB Report
EGAF00004965325 fastq.gz 874.3 MB Report
EGAF00004965326 fastq.gz 1.0 GB Report
EGAF00004965327 fastq.gz 844.6 MB Report
EGAF00004965328 fastq.gz 913.0 MB Report
EGAF00004965329 fastq.gz 1.1 GB Report
EGAF00004965330 fastq.gz 648.7 MB Report
EGAF00004965331 fastq.gz 683.4 MB Report
EGAF00004965332 fastq.gz 828.0 MB Report
EGAF00004965333 fastq.gz 858.6 MB Report
EGAF00004965334 fastq.gz 1.4 GB Report
EGAF00004965335 fastq.gz 1.5 GB Report
EGAF00004965336 fastq.gz 1.4 GB Report
EGAF00004965337 fastq.gz 1.5 GB Report
EGAF00004965338 fastq.gz 861.5 MB Report
EGAF00004965339 fastq.gz 575.7 MB Report
EGAF00004965340 fastq.gz 725.6 MB Report
EGAF00004965341 fastq.gz 985.6 MB Report
EGAF00004965342 fastq.gz 1.3 GB Report
EGAF00004965343 fastq.gz 863.4 MB Report
EGAF00004965344 fastq.gz 713.6 MB Report
EGAF00004965345 fastq.gz 963.0 MB Report
EGAF00004965346 fastq.gz 438.8 MB Report
EGAF00004965347 fastq.gz 526.5 MB Report
EGAF00004965348 fastq.gz 515.1 MB Report
EGAF00004965349 fastq.gz 696.9 MB Report
EGAF00004965350 fastq.gz 1.5 GB Report
EGAF00004965351 fastq.gz 1.5 GB Report
EGAF00004965352 fastq.gz 738.1 MB Report
EGAF00004965353 fastq.gz 756.9 MB Report
EGAF00004965354 fastq.gz 778.7 MB Report
EGAF00004965355 fastq.gz 703.2 MB Report
EGAF00004965356 fastq.gz 747.6 MB Report
EGAF00004965357 fastq.gz 552.0 MB Report
185 Files (182.7 GB)