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sWGS of CTCL patients

Paired end shallow whole genome sequencing (sWGS) data for the identification of somatic copy number alterations (SCNA) and the estimation of tumor fraction and ploidy sorted malignant CD3+/Vb+ T-cells and corresponding CD19+ non-malignant B-cells

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CTCL datasets

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to datasets of CTCL (EFO_0002913) which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer, who is a principal investigator at the Medical University of Graz, Austria. She is authorized to approve researchers to have encrypted access to the data submitted to the EGA. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Ellen Heitzer Principle Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004719 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004977218 fastq.gz 327.0 MB
EGAF00004977219 fastq.gz 331.7 MB
EGAF00004977220 fastq.gz 385.8 MB
EGAF00004977221 fastq.gz 404.6 MB
EGAF00004977222 fastq.gz 198.1 MB
EGAF00004977223 fastq.gz 202.3 MB
EGAF00004977224 fastq.gz 199.6 MB
EGAF00004977225 fastq.gz 196.9 MB
EGAF00004977226 fastq.gz 274.4 MB
EGAF00004977227 fastq.gz 278.0 MB
EGAF00004977228 fastq.gz 190.5 MB
EGAF00004977229 fastq.gz 197.1 MB
EGAF00004977230 fastq.gz 82.9 MB
EGAF00004977231 fastq.gz 91.8 MB
EGAF00004977232 fastq.gz 454.5 MB
EGAF00004977233 fastq.gz 497.5 MB
EGAF00004977234 fastq.gz 143.2 MB
EGAF00004977235 fastq.gz 147.4 MB
EGAF00004977236 fastq.gz 214.9 MB
EGAF00004977237 fastq.gz 239.3 MB
EGAF00004977238 fastq.gz 224.8 MB
EGAF00004977239 fastq.gz 254.6 MB
22 Files (5.5 GB)