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single cell RNAseq data of lung adenocarcinoma

Single-cell RNA sequencing was performed for cells from five early-stage LUADs and fourteen multi-region normal lung tissues of defined spatial proximities from the tumors.

Request Access

Data access agreement for the single cell RNAseq data of lung cancer

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines ( ) and the Toronto Statement ( This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) ( ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) ( ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts. Agreed for User Institution Signature:   Name:   Title:   Date:   Principal Investigator I confirm that I have read and understood this Agreement. Signature:   Name:   Title:   Date:   Agreed for XXXXX Signature:   Name:   Title:   Date:   APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY XXXXX intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. XXXXX anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until XX months after these data were first made available on the relevant hosting database, unless XXXXX has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with XXXXX.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005021 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004982181 fastq.gz 3.2 GB
EGAF00004982182 fastq.gz 8.1 GB
EGAF00004982183 fastq.gz 3.2 GB
EGAF00004982184 fastq.gz 8.2 GB
EGAF00004982185 fastq.gz 3.4 GB
EGAF00004982186 fastq.gz 8.6 GB
EGAF00004982187 fastq.gz 3.4 GB
EGAF00004982188 fastq.gz 8.6 GB
EGAF00004982189 fastq.gz 3.3 GB
EGAF00004982190 fastq.gz 8.5 GB
EGAF00004982191 fastq.gz 3.3 GB
EGAF00004982192 fastq.gz 8.4 GB
EGAF00004982193 fastq.gz 5.4 GB
EGAF00004982194 fastq.gz 13.4 GB
EGAF00004982195 fastq.gz 5.4 GB
EGAF00004982196 fastq.gz 13.4 GB
EGAF00004982197 fastq.gz 5.1 GB
EGAF00004982198 fastq.gz 12.7 GB
EGAF00004982199 fastq.gz 5.2 GB
EGAF00004982200 fastq.gz 12.8 GB
EGAF00004982201 fastq.gz 20.9 GB
EGAF00004982202 fastq.gz 52.5 GB
EGAF00004982203 fastq.gz 4.7 GB
EGAF00004982204 fastq.gz 11.6 GB
EGAF00004982205 fastq.gz 4.7 GB
EGAF00004982206 fastq.gz 11.6 GB
EGAF00004982207 fastq.gz 5.1 GB
EGAF00004982208 fastq.gz 12.7 GB
EGAF00004982209 fastq.gz 5.1 GB
EGAF00004982210 fastq.gz 12.7 GB
EGAF00004982211 fastq.gz 17.9 GB
EGAF00004982212 fastq.gz 45.0 GB
EGAF00004982213 fastq.gz 5.6 GB
EGAF00004982214 fastq.gz 14.0 GB
EGAF00004982215 fastq.gz 5.6 GB
EGAF00004982216 fastq.gz 14.0 GB
EGAF00004982217 fastq.gz 5.0 GB
EGAF00004982218 fastq.gz 12.4 GB
EGAF00004982219 fastq.gz 5.0 GB
EGAF00004982220 fastq.gz 12.4 GB
EGAF00004982221 fastq.gz 5.6 GB
EGAF00004982222 fastq.gz 13.7 GB
EGAF00004982223 fastq.gz 5.6 GB
EGAF00004982224 fastq.gz 13.8 GB
EGAF00004982225 fastq.gz 5.9 GB
EGAF00004982226 fastq.gz 14.7 GB
EGAF00004982227 fastq.gz 5.9 GB
EGAF00004982228 fastq.gz 14.6 GB
EGAF00004982229 fastq.gz 5.3 GB
EGAF00004982230 fastq.gz 13.7 GB
EGAF00004982231 fastq.gz 5.3 GB
EGAF00004982232 fastq.gz 13.7 GB
EGAF00004982233 fastq.gz 3.4 GB
EGAF00004982234 fastq.gz 8.7 GB
EGAF00004982235 fastq.gz 3.4 GB
EGAF00004982236 fastq.gz 8.7 GB
EGAF00004982237 fastq.gz 4.6 GB
EGAF00004982238 fastq.gz 11.5 GB
EGAF00004982239 fastq.gz 4.6 GB
EGAF00004982240 fastq.gz 11.5 GB
EGAF00004982241 fastq.gz 5.1 GB
EGAF00004982242 fastq.gz 12.6 GB
EGAF00004982243 fastq.gz 5.1 GB
EGAF00004982244 fastq.gz 12.6 GB
EGAF00004982245 fastq.gz 5.2 GB
EGAF00004982246 fastq.gz 12.9 GB
EGAF00004982247 fastq.gz 5.2 GB
EGAF00004982248 fastq.gz 12.9 GB
EGAF00004982249 fastq.gz 5.2 GB
EGAF00004982250 fastq.gz 13.0 GB
EGAF00004982251 fastq.gz 5.2 GB
EGAF00004982252 fastq.gz 13.0 GB
EGAF00004982253 fastq.gz 4.9 GB
EGAF00004982254 fastq.gz 12.1 GB
EGAF00004982255 fastq.gz 4.9 GB
EGAF00004982256 fastq.gz 12.0 GB
EGAF00004982257 fastq.gz 5.0 GB
EGAF00004982258 fastq.gz 12.1 GB
EGAF00004982259 fastq.gz 5.0 GB
EGAF00004982260 fastq.gz 12.1 GB
EGAF00004982261 fastq.gz 4.5 GB
EGAF00004982262 fastq.gz 11.4 GB
EGAF00004982263 fastq.gz 4.5 GB
EGAF00004982264 fastq.gz 11.4 GB
EGAF00004982265 fastq.gz 5.3 GB
EGAF00004982266 fastq.gz 13.3 GB
EGAF00004982267 fastq.gz 5.3 GB
EGAF00004982268 fastq.gz 13.3 GB
EGAF00004982269 fastq.gz 6.1 GB
EGAF00004982270 fastq.gz 15.4 GB
EGAF00004982271 fastq.gz 6.1 GB
EGAF00004982272 fastq.gz 15.4 GB
EGAF00004982273 fastq.gz 6.6 GB
EGAF00004982274 fastq.gz 16.5 GB
EGAF00004982275 fastq.gz 6.6 GB
EGAF00004982276 fastq.gz 16.5 GB
EGAF00004982277 fastq.gz 7.7 GB
EGAF00004982278 fastq.gz 19.4 GB
EGAF00004982279 fastq.gz 7.7 GB
EGAF00004982280 fastq.gz 19.4 GB
EGAF00004982281 fastq.gz 7.2 GB
EGAF00004982282 fastq.gz 17.9 GB
EGAF00004982283 fastq.gz 7.2 GB
EGAF00004982284 fastq.gz 17.9 GB
EGAF00004982285 fastq.gz 6.6 GB
EGAF00004982286 fastq.gz 16.7 GB
EGAF00004982287 fastq.gz 6.6 GB
EGAF00004982288 fastq.gz 16.7 GB
EGAF00004982289 fastq.gz 709.3 kB
EGAF00004982290 fastq.gz 1.4 MB
EGAF00004982291 fastq.gz 708.1 kB
EGAF00004982292 fastq.gz 1.4 MB
EGAF00004982293 fastq.gz 4.0 GB
EGAF00004982294 fastq.gz 10.1 GB
EGAF00004982295 fastq.gz 4.7 GB
EGAF00004982296 fastq.gz 11.8 GB
EGAF00004982297 fastq.gz 5.4 GB
EGAF00004982298 fastq.gz 13.6 GB
EGAF00004982299 fastq.gz 5.7 GB
EGAF00004982300 fastq.gz 14.3 GB
EGAF00004982301 fastq.gz 6.9 GB
EGAF00004982302 fastq.gz 17.4 GB
EGAF00004982303 fastq.gz 6.3 GB
EGAF00004982304 fastq.gz 15.6 GB
EGAF00004982305 fastq.gz 5.9 GB
EGAF00004982306 fastq.gz 14.7 GB
EGAF00004982307 fastq.gz 746.5 kB
EGAF00004982308 fastq.gz 1.5 MB
EGAF00004982309 fastq.gz 2.3 GB
EGAF00004982310 fastq.gz 5.9 GB
EGAF00004982311 fastq.gz 2.2 GB
EGAF00004982312 fastq.gz 5.6 GB
EGAF00004982313 fastq.gz 5.6 GB
EGAF00004982314 fastq.gz 14.3 GB
EGAF00004982315 fastq.gz 5.6 GB
EGAF00004982316 fastq.gz 14.3 GB
EGAF00004982317 fastq.gz 2.0 GB
EGAF00004982318 fastq.gz 5.0 GB
EGAF00004982319 fastq.gz 2.1 GB
EGAF00004982320 fastq.gz 5.3 GB
EGAF00004982321 fastq.gz 550.7 MB
EGAF00004982322 fastq.gz 1.4 GB
EGAF00004982323 fastq.gz 515.9 MB
EGAF00004982324 fastq.gz 1.3 GB
EGAF00004982325 fastq.gz 2.1 GB
EGAF00004982326 fastq.gz 5.3 GB
EGAF00004982327 fastq.gz 2.2 GB
EGAF00004982328 fastq.gz 5.6 GB
EGAF00004982329 fastq.gz 1.3 GB
EGAF00004982330 fastq.gz 3.2 GB
EGAF00004982331 fastq.gz 1.3 GB
EGAF00004982332 fastq.gz 3.4 GB
EGAF00004982333 fastq.gz 2.1 GB
EGAF00004982334 fastq.gz 5.3 GB
EGAF00004982335 fastq.gz 2.2 GB
EGAF00004982336 fastq.gz 5.6 GB
EGAF00004982337 fastq.gz 1.5 GB
EGAF00004982338 fastq.gz 3.8 GB
EGAF00004982339 fastq.gz 1.4 GB
EGAF00004982340 fastq.gz 3.6 GB
EGAF00004982341 fastq.gz 2.1 GB
EGAF00004982342 fastq.gz 5.3 GB
EGAF00004982343 fastq.gz 2.2 GB
EGAF00004982344 fastq.gz 5.6 GB
EGAF00004982345 fastq.gz 2.1 GB
EGAF00004982346 fastq.gz 5.2 GB
EGAF00004982347 fastq.gz 1.9 GB
EGAF00004982348 fastq.gz 4.9 GB
EGAF00004982349 fastq.gz 5.1 GB
EGAF00004982350 fastq.gz 13.0 GB
EGAF00004982351 fastq.gz 5.1 GB
EGAF00004982352 fastq.gz 13.0 GB
EGAF00004982353 fastq.gz 1.4 GB
EGAF00004982354 fastq.gz 3.4 GB
EGAF00004982355 fastq.gz 1.3 GB
EGAF00004982356 fastq.gz 3.4 GB
EGAF00004982357 fastq.gz 5.4 GB
EGAF00004982358 fastq.gz 13.7 GB
EGAF00004982359 fastq.gz 5.4 GB
EGAF00004982360 fastq.gz 13.7 GB
EGAF00004982361 fastq.gz 3.3 GB
EGAF00004982362 fastq.gz 8.4 GB
EGAF00004982363 fastq.gz 3.3 GB
EGAF00004982364 fastq.gz 8.4 GB
EGAF00004982365 fastq.gz 5.3 GB
EGAF00004982366 fastq.gz 13.6 GB
EGAF00004982367 fastq.gz 5.4 GB
EGAF00004982368 fastq.gz 13.6 GB
EGAF00004982369 fastq.gz 3.8 GB
EGAF00004982370 fastq.gz 9.6 GB
EGAF00004982371 fastq.gz 3.8 GB
EGAF00004982372 fastq.gz 9.5 GB
EGAF00004982373 fastq.gz 5.3 GB
EGAF00004982374 fastq.gz 13.5 GB
EGAF00004982375 fastq.gz 5.4 GB
EGAF00004982376 fastq.gz 13.5 GB
EGAF00004982377 fastq.gz 5.1 GB
EGAF00004982378 fastq.gz 12.9 GB
EGAF00004982379 fastq.gz 5.1 GB
EGAF00004982380 fastq.gz 12.9 GB
200 Files (1.6 TB)