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Exome Sequencing of Gastric Cancer Samples

We perform whole exome sequencing on 50 pairs of gastric cancer and matched normal samples.

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National University of Singapore data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions by signing this Data Access Agreement. Definitions Authorised Personnel: The individuals at the User Institution to whom NUS grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NUS and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. NUS: The National University of Singapore with its registered address at 21 Lower Kent Ridge Road, Singapore 119077. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes, which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NUS, within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NUS prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NUS as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NUS may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NUS. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Singapore and shall be subject to the exclusive jurisdiction of the courts in Singapore.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005032 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004996696 fastq.gz 8.1 GB
EGAF00004996697 fastq.gz 8.4 GB
EGAF00004996698 fastq.gz 6.0 GB
EGAF00004996699 fastq.gz 5.9 GB
EGAF00004996700 fastq.gz 5.6 GB
EGAF00004996701 fastq.gz 6.0 GB
EGAF00004996702 fastq.gz 5.8 GB
EGAF00004996703 fastq.gz 6.2 GB
EGAF00004996704 fastq.gz 5.0 GB
EGAF00004996705 fastq.gz 4.8 GB
EGAF00004996706 fastq.gz 7.1 GB
EGAF00004996707 fastq.gz 7.1 GB
EGAF00004996708 fastq.gz 6.3 GB
EGAF00004996709 fastq.gz 6.0 GB
EGAF00004996710 fastq.gz 4.8 GB
EGAF00004996711 fastq.gz 4.9 GB
EGAF00004996712 fastq.gz 7.0 GB
EGAF00004996713 fastq.gz 7.5 GB
EGAF00004996714 fastq.gz 6.7 GB
EGAF00004996715 fastq.gz 7.2 GB
EGAF00004996716 fastq.gz 7.2 GB
EGAF00004996717 fastq.gz 7.5 GB
EGAF00004996718 fastq.gz 7.0 GB
EGAF00004996719 fastq.gz 6.8 GB
EGAF00004996720 fastq.gz 17.5 GB
EGAF00004996721 fastq.gz 18.4 GB
EGAF00004996722 fastq.gz 4.0 GB
EGAF00004996723 fastq.gz 3.8 GB
EGAF00004996724 fastq.gz 5.3 GB
EGAF00004996725 fastq.gz 5.8 GB
EGAF00004996726 fastq.gz 6.8 GB
EGAF00004996727 fastq.gz 7.3 GB
EGAF00004996728 fastq.gz 7.4 GB
EGAF00004996729 fastq.gz 7.1 GB
EGAF00004996730 fastq.gz 5.0 GB
EGAF00004996731 fastq.gz 5.2 GB
EGAF00004996732 fastq.gz 5.5 GB
EGAF00004996733 fastq.gz 5.6 GB
EGAF00004996734 fastq.gz 4.5 GB
EGAF00004996735 fastq.gz 4.9 GB
EGAF00004996736 fastq.gz 5.7 GB
EGAF00004996737 fastq.gz 5.9 GB
EGAF00004996738 fastq.gz 4.6 GB
EGAF00004996739 fastq.gz 5.0 GB
EGAF00004996740 fastq.gz 8.5 GB
EGAF00004996741 fastq.gz 8.5 GB
EGAF00004996742 fastq.gz 6.6 GB
EGAF00004996743 fastq.gz 6.4 GB
EGAF00004996744 fastq.gz 5.3 GB
EGAF00004996745 fastq.gz 5.6 GB
EGAF00004996746 fastq.gz 8.8 GB
EGAF00004996747 fastq.gz 8.6 GB
EGAF00004996748 fastq.gz 4.0 GB
EGAF00004996749 fastq.gz 4.1 GB
EGAF00004996750 fastq.gz 8.6 GB
EGAF00004996751 fastq.gz 8.9 GB
EGAF00004996752 fastq.gz 6.6 GB
EGAF00004996753 fastq.gz 6.8 GB
EGAF00004996754 fastq.gz 7.8 GB
EGAF00004996755 fastq.gz 8.0 GB
EGAF00004996756 fastq.gz 4.8 GB
EGAF00004996757 fastq.gz 4.9 GB
EGAF00004996758 fastq.gz 6.9 GB
EGAF00004996759 fastq.gz 7.5 GB
EGAF00004996760 fastq.gz 6.7 GB
EGAF00004996761 fastq.gz 6.6 GB
EGAF00004996762 fastq.gz 6.9 GB
EGAF00004996763 fastq.gz 6.7 GB
EGAF00004996764 fastq.gz 5.3 GB
EGAF00004996765 fastq.gz 5.8 GB
EGAF00004996766 fastq.gz 5.6 GB
EGAF00004996767 fastq.gz 6.0 GB
EGAF00004996768 fastq.gz 6.4 GB
EGAF00004996769 fastq.gz 6.3 GB
EGAF00004996770 fastq.gz 4.9 GB
EGAF00004996771 fastq.gz 4.7 GB
EGAF00004996772 fastq.gz 7.2 GB
EGAF00004996773 fastq.gz 7.5 GB
EGAF00004996774 fastq.gz 6.8 GB
EGAF00004996775 fastq.gz 6.8 GB
EGAF00004996776 fastq.gz 4.9 GB
EGAF00004996777 fastq.gz 5.0 GB
EGAF00004996778 fastq.gz 6.2 GB
EGAF00004996779 fastq.gz 6.2 GB
EGAF00004996780 fastq.gz 5.5 GB
EGAF00004996781 fastq.gz 5.9 GB
EGAF00004996782 fastq.gz 4.3 GB
EGAF00004996783 fastq.gz 4.5 GB
EGAF00004996784 fastq.gz 4.4 GB
EGAF00004996785 fastq.gz 4.8 GB
EGAF00004996786 fastq.gz 6.2 GB
EGAF00004996787 fastq.gz 6.1 GB
EGAF00004996788 fastq.gz 5.9 GB
EGAF00004996789 fastq.gz 6.3 GB
EGAF00004996790 fastq.gz 4.2 GB
EGAF00004996791 fastq.gz 4.0 GB
EGAF00004996792 fastq.gz 5.6 GB
EGAF00004996793 fastq.gz 6.0 GB
EGAF00004996794 fastq.gz 3.5 GB
EGAF00004996795 fastq.gz 3.4 GB
EGAF00004996796 fastq.gz 6.9 GB
EGAF00004996797 fastq.gz 7.4 GB
EGAF00004996798 fastq.gz 6.0 GB
EGAF00004996799 fastq.gz 6.2 GB
EGAF00004996800 fastq.gz 5.5 GB
EGAF00004996801 fastq.gz 5.4 GB
EGAF00004996802 fastq.gz 5.5 GB
EGAF00004996803 fastq.gz 5.2 GB
EGAF00004996804 fastq.gz 6.1 GB
EGAF00004996805 fastq.gz 6.0 GB
EGAF00004996806 fastq.gz 6.0 GB
EGAF00004996807 fastq.gz 5.8 GB
EGAF00004996808 fastq.gz 6.1 GB
EGAF00004996809 fastq.gz 6.6 GB
EGAF00004996810 fastq.gz 5.1 GB
EGAF00004996811 fastq.gz 5.4 GB
EGAF00004996812 fastq.gz 5.4 GB
EGAF00004996813 fastq.gz 5.4 GB
EGAF00004996814 fastq.gz 5.2 GB
EGAF00004996815 fastq.gz 5.4 GB
EGAF00004996816 fastq.gz 5.5 GB
EGAF00004996817 fastq.gz 5.7 GB
EGAF00004996818 fastq.gz 6.5 GB
EGAF00004996819 fastq.gz 6.9 GB
EGAF00004996820 fastq.gz 4.0 GB
EGAF00004996821 fastq.gz 4.3 GB
EGAF00004996822 fastq.gz 4.8 GB
EGAF00004996823 fastq.gz 4.7 GB
EGAF00004996824 fastq.gz 3.8 GB
EGAF00004996825 fastq.gz 4.1 GB
EGAF00004996826 fastq.gz 6.1 GB
EGAF00004996827 fastq.gz 6.0 GB
EGAF00004996828 fastq.gz 5.9 GB
EGAF00004996829 fastq.gz 5.7 GB
EGAF00004996830 fastq.gz 6.5 GB
EGAF00004996831 fastq.gz 6.4 GB
EGAF00004996832 fastq.gz 4.4 GB
EGAF00004996833 fastq.gz 4.7 GB
EGAF00004996834 fastq.gz 5.7 GB
EGAF00004996835 fastq.gz 6.2 GB
EGAF00004996836 fastq.gz 6.0 GB
EGAF00004996837 fastq.gz 6.2 GB
EGAF00004996838 fastq.gz 5.6 GB
EGAF00004996839 fastq.gz 5.4 GB
EGAF00004996840 fastq.gz 10.5 GB
EGAF00004996841 fastq.gz 10.8 GB
EGAF00004996842 fastq.gz 5.8 GB
EGAF00004996843 fastq.gz 6.3 GB
EGAF00004996844 fastq.gz 7.0 GB
EGAF00004996845 fastq.gz 6.9 GB
EGAF00004996846 fastq.gz 4.7 GB
EGAF00004996847 fastq.gz 5.0 GB
EGAF00004996848 fastq.gz 4.8 GB
EGAF00004996849 fastq.gz 4.7 GB
EGAF00004996850 fastq.gz 5.9 GB
EGAF00004996851 fastq.gz 6.4 GB
EGAF00004996852 fastq.gz 11.2 GB
EGAF00004996853 fastq.gz 11.2 GB
EGAF00004996854 fastq.gz 8.7 GB
EGAF00004996855 fastq.gz 9.0 GB
EGAF00004996856 fastq.gz 5.0 GB
EGAF00004996857 fastq.gz 5.4 GB
EGAF00004996858 fastq.gz 4.5 GB
EGAF00004996859 fastq.gz 4.6 GB
EGAF00004996860 fastq.gz 4.9 GB
EGAF00004996861 fastq.gz 4.7 GB
EGAF00004996862 fastq.gz 8.4 GB
EGAF00004996863 fastq.gz 8.4 GB
EGAF00004996864 fastq.gz 5.3 GB
EGAF00004996865 fastq.gz 5.8 GB
EGAF00004996866 fastq.gz 6.1 GB
EGAF00004996867 fastq.gz 6.5 GB
EGAF00004996868 fastq.gz 4.1 GB
EGAF00004996869 fastq.gz 4.2 GB
EGAF00004996870 fastq.gz 7.0 GB
EGAF00004996871 fastq.gz 7.3 GB
EGAF00004996872 fastq.gz 5.5 GB
EGAF00004996873 fastq.gz 5.5 GB
EGAF00004996874 fastq.gz 5.7 GB
EGAF00004996875 fastq.gz 5.7 GB
EGAF00004996876 fastq.gz 5.8 GB
EGAF00004996877 fastq.gz 5.9 GB
EGAF00004996878 fastq.gz 5.0 GB
EGAF00004996879 fastq.gz 5.0 GB
EGAF00004996880 fastq.gz 11.4 GB
EGAF00004996881 fastq.gz 11.4 GB
EGAF00004996882 fastq.gz 6.5 GB
EGAF00004996883 fastq.gz 6.8 GB
EGAF00004996884 fastq.gz 7.7 GB
EGAF00004996885 fastq.gz 7.5 GB
EGAF00004996886 fastq.gz 5.2 GB
EGAF00004996887 fastq.gz 5.1 GB
EGAF00004996888 fastq.gz 7.9 GB
EGAF00004996889 fastq.gz 8.3 GB
EGAF00004996890 fastq.gz 4.0 GB
EGAF00004996891 fastq.gz 4.3 GB
EGAF00004996892 fastq.gz 6.8 GB
EGAF00004996893 fastq.gz 6.8 GB
EGAF00004996894 fastq.gz 7.3 GB
EGAF00004996895 fastq.gz 7.9 GB
200 Files (1.2 TB)