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HPS1 patient monocyte-derived macrophage and control macrophage RNAseq with and without infection

4 HPS1 patient monocyte-derived macrophages and 4 controls were RNA sequenced at baseline and after Salmonella Typhimurium infection. We used paired end sequencing on an Illumina HiSeq 4000. Each sample was run on 3 lanes for sequencing depth, which we combined for our analysis.

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The committee will consider the applications for data access. An MTA with Professor Louis Cohen is needed to receive the data. The MTA must have a clause confirming that no attempt will be undertaken to de-anonymise the data and that the variant data will not be made publicly available.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005053 Other
ID File Type Size Located in
EGAF00005001833 fastq.gz 468.1 MB
EGAF00005001834 fastq.gz 509.0 MB
EGAF00005002737 fastq.gz 493.0 MB
EGAF00005002738 fastq.gz 505.2 MB
EGAF00005002739 fastq.gz 407.9 MB
EGAF00005002740 fastq.gz 422.1 MB
EGAF00005002741 fastq.gz 429.0 MB
EGAF00005002742 fastq.gz 442.1 MB
EGAF00005002743 fastq.gz 477.0 MB
EGAF00005002744 fastq.gz 488.5 MB
EGAF00005002745 fastq.gz 426.2 MB
EGAF00005002746 fastq.gz 433.3 MB
EGAF00005002747 fastq.gz 474.4 MB
EGAF00005002748 fastq.gz 489.3 MB
EGAF00005002749 fastq.gz 475.6 MB
EGAF00005002750 fastq.gz 490.7 MB
EGAF00005002751 fastq.gz 511.1 MB
EGAF00005002752 fastq.gz 524.8 MB
EGAF00005002753 fastq.gz 464.5 MB
EGAF00005002754 fastq.gz 477.2 MB
EGAF00005002755 fastq.gz 452.5 MB
EGAF00005002756 fastq.gz 463.4 MB
EGAF00005002757 fastq.gz 396.2 MB
EGAF00005002758 fastq.gz 410.2 MB
EGAF00005002759 fastq.gz 459.3 MB
EGAF00005002760 fastq.gz 477.0 MB
EGAF00005002761 fastq.gz 475.8 MB
EGAF00005002762 fastq.gz 496.0 MB
EGAF00005002763 fastq.gz 484.2 MB
EGAF00005002764 fastq.gz 498.6 MB
EGAF00005002765 fastq.gz 495.0 MB
EGAF00005002766 fastq.gz 505.5 MB
EGAF00005002767 fastq.gz 450.3 MB
EGAF00005002768 fastq.gz 462.1 MB
EGAF00005002769 fastq.gz 482.4 MB
EGAF00005002770 fastq.gz 494.7 MB
EGAF00005002771 fastq.gz 401.8 MB
EGAF00005002772 fastq.gz 416.1 MB
EGAF00005002773 fastq.gz 421.6 MB
EGAF00005002774 fastq.gz 434.4 MB
EGAF00005002775 fastq.gz 468.4 MB
EGAF00005002776 fastq.gz 479.5 MB
EGAF00005002777 fastq.gz 501.5 MB
EGAF00005002778 fastq.gz 514.6 MB
EGAF00005002779 fastq.gz 466.4 MB
EGAF00005002780 fastq.gz 481.1 MB
EGAF00005002781 fastq.gz 465.0 MB
EGAF00005002782 fastq.gz 479.7 MB
EGAF00005002783 fastq.gz 434.8 MB
EGAF00005002784 fastq.gz 467.8 MB
EGAF00005002785 fastq.gz 422.3 MB
EGAF00005002786 fastq.gz 456.7 MB
EGAF00005002787 fastq.gz 444.4 MB
EGAF00005002788 fastq.gz 483.0 MB
EGAF00005002789 fastq.gz 438.4 MB
EGAF00005002790 fastq.gz 480.5 MB
EGAF00005002791 fastq.gz 364.8 MB
EGAF00005002792 fastq.gz 398.6 MB
EGAF00005002793 fastq.gz 428.3 MB
EGAF00005002794 fastq.gz 468.9 MB
EGAF00005002795 fastq.gz 377.1 MB
EGAF00005002796 fastq.gz 411.5 MB
EGAF00005002797 fastq.gz 452.8 MB
EGAF00005002798 fastq.gz 489.9 MB
EGAF00005002799 fastq.gz 418.7 MB
EGAF00005002800 fastq.gz 453.6 MB
EGAF00005002801 fastq.gz 459.5 MB
EGAF00005002802 fastq.gz 494.1 MB
EGAF00005002803 fastq.gz 394.2 MB
EGAF00005002804 fastq.gz 426.7 MB
EGAF00005002805 fastq.gz 438.6 MB
EGAF00005002806 fastq.gz 472.7 MB
EGAF00005002807 fastq.gz 397.6 MB
EGAF00005002808 fastq.gz 428.0 MB
EGAF00005002809 fastq.gz 435.5 MB
EGAF00005002810 fastq.gz 475.3 MB
EGAF00005002811 fastq.gz 432.8 MB
EGAF00005002812 fastq.gz 471.2 MB
EGAF00005002813 fastq.gz 473.4 MB
EGAF00005002814 fastq.gz 486.9 MB
EGAF00005002815 fastq.gz 463.9 MB
EGAF00005002816 fastq.gz 474.9 MB
EGAF00005002817 fastq.gz 495.8 MB
EGAF00005002818 fastq.gz 510.1 MB
EGAF00005002819 fastq.gz 486.4 MB
EGAF00005002820 fastq.gz 506.8 MB
EGAF00005002821 fastq.gz 469.5 MB
EGAF00005002822 fastq.gz 487.3 MB
EGAF00005002823 fastq.gz 405.2 MB
EGAF00005002824 fastq.gz 419.2 MB
EGAF00005002825 fastq.gz 507.3 MB
EGAF00005002826 fastq.gz 517.8 MB
EGAF00005002827 fastq.gz 459.5 MB
EGAF00005002828 fastq.gz 471.0 MB
EGAF00005002829 fastq.gz 417.3 MB
EGAF00005002830 fastq.gz 424.2 MB
96 Files (44.1 GB)