About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA-sequencing of primary urothelial bladder cancer samples

Paired-end RNA-sequencing of tumour tissue samples (n=85) from primary urothelial bladder cancer patients. Sequencing was performed using either HiSeq (n=27) or NextSeq (n=58) Illumina platforms. Of the 85 samples, 78 are Non-muscle invasive (NMIBC) and 7 are Muscle invasive (MIBC).

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DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

Governing body for the terms and conditions of accessing genotyping and/or genomic sequencing (DNA or RNA) generated by the Bladder Cancer Prognosis Programme and the Bladder Cancer Research Centre at the University of Birmingham, United Kingdom

Terms and Conditions: 1. No personally identifiable information will be released. Limited clinical information may be passed on to researchers within the European Economic Area. It would not be possible to identify any patient from this information and any information provided will be handled according to the normal standard of medical confidentiality and data protection. 2. Data analyses may be carried out by other academic institutions in a collaborative fashion so long as the research will be carried out in-line with the objectives and ethical approvals of the Bladder Cancer Prognosis Programme and the Bladder Cancer Research Centre at the University of Birmingham, UK: https://www.birmingham.ac.uk/Documents/college-mds/cancer-genomic-sciences/Bladder-Cancer-Prognosis-Programme-SELENIB-Trial.pdf and https://www.birmingham.ac.uk/research/bladder-cancer/index.aspx 3. You agree to use the Data only for the purpose of academic/medical research. 4. You agree not to use the Data for any commercial purpose. 5. You agree to preserve the confidentiality of Data pertaining to Data Subjects. In particular, you agree not to use, or attempt not to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 6. You agree not to attempt to link the Data with any other data source that could be used to identify any Data Subject from the Data. 7. You agree not to transfer or disclose the Data, in whole or part, or any derivative of the Data, to others, except as necessary for data/safety monitoring or program management. Should you wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 8. You agree to use the Data for the approved purpose and project described in your Application for Access to Genotype Data. Use of the Data for a new purpose or project will require a new application and approval. 9. You agree to acknowledge the Bladder Cancer Research Centre, Institute of Cancer & Genomic Sciences, University of Birmingham, UK in any publication arising from research that makes use of the Data. 10. You understand and acknowledge that the Data is protected by intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 11. You recognize that nothing in the Agreement allows to transfer to the User Institution any intellectual property rights relating to the Data. 12. The Agreement (and any dispute, controversy, proceedings or claim of whatsoever nature arising out of the Agreement on its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004358 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005068425 fastq.gz 1.4 GB Report
EGAF00005068426 fastq.gz 1.5 GB Report
EGAF00005068427 fastq.gz 3.4 GB Report
EGAF00005068428 fastq.gz 3.5 GB Report
EGAF00005068429 fastq.gz 552.4 MB Report
EGAF00005068430 fastq.gz 559.8 MB Report
EGAF00005068431 fastq.gz 550.4 MB Report
EGAF00005068432 fastq.gz 564.2 MB Report
EGAF00005068433 fastq.gz 569.4 MB Report
EGAF00005068434 fastq.gz 581.9 MB Report
EGAF00005068435 fastq.gz 2.1 GB Report
EGAF00005068436 fastq.gz 2.2 GB Report
EGAF00005068437 fastq.gz 2.8 GB Report
EGAF00005068438 fastq.gz 2.9 GB Report
EGAF00005068439 fastq.gz 1.3 GB Report
EGAF00005068440 fastq.gz 1.0 GB Report
EGAF00005068441 fastq.gz 2.2 GB Report
EGAF00005068442 fastq.gz 2.2 GB Report
EGAF00005068443 fastq.gz 2.3 GB Report
EGAF00005068444 fastq.gz 2.3 GB Report
EGAF00005068445 fastq.gz 3.3 GB Report
EGAF00005068446 fastq.gz 3.4 GB Report
EGAF00005068447 fastq.gz 5.0 GB Report
EGAF00005068448 fastq.gz 5.2 GB Report
EGAF00005068449 fastq.gz 2.6 GB Report
EGAF00005068450 fastq.gz 2.7 GB Report
EGAF00005068451 fastq.gz 2.2 GB Report
EGAF00005068452 fastq.gz 2.3 GB Report
EGAF00005068453 fastq.gz 1.9 GB Report
EGAF00005068454 fastq.gz 1.9 GB Report
EGAF00005068455 fastq.gz 2.2 GB Report
EGAF00005068456 fastq.gz 2.2 GB Report
EGAF00005068457 fastq.gz 2.5 GB Report
EGAF00005068458 fastq.gz 2.5 GB Report
EGAF00005068459 fastq.gz 2.3 GB Report
EGAF00005068460 fastq.gz 2.4 GB Report
EGAF00005068461 fastq.gz 2.8 GB Report
EGAF00005068462 fastq.gz 2.9 GB Report
EGAF00005068463 fastq.gz 1.5 GB Report
EGAF00005068464 fastq.gz 1.5 GB Report
EGAF00005068465 fastq.gz 2.9 GB Report
EGAF00005068466 fastq.gz 2.9 GB Report
EGAF00005068467 fastq.gz 3.4 GB Report
EGAF00005068468 fastq.gz 3.5 GB Report
EGAF00005068469 fastq.gz 470.6 MB Report
EGAF00005068470 fastq.gz 383.7 MB Report
EGAF00005068471 fastq.gz 2.2 GB Report
EGAF00005068472 fastq.gz 2.2 GB Report
EGAF00005068473 fastq.gz 990.5 MB Report
EGAF00005068474 fastq.gz 820.4 MB Report
EGAF00005068475 fastq.gz 2.5 GB Report
EGAF00005068476 fastq.gz 2.6 GB Report
EGAF00005068477 fastq.gz 2.7 GB Report
EGAF00005068478 fastq.gz 2.8 GB Report
EGAF00005068479 fastq.gz 3.1 GB Report
EGAF00005068480 fastq.gz 3.1 GB Report
EGAF00005068481 fastq.gz 2.1 GB Report
EGAF00005068482 fastq.gz 2.1 GB Report
EGAF00005068483 fastq.gz 685.8 MB Report
EGAF00005068484 fastq.gz 571.8 MB Report
EGAF00005068485 fastq.gz 860.9 MB Report
EGAF00005068486 fastq.gz 710.7 MB Report
EGAF00005068487 fastq.gz 634.9 MB Report
EGAF00005068488 fastq.gz 646.3 MB Report
EGAF00005068489 fastq.gz 911.2 MB Report
EGAF00005068490 fastq.gz 756.0 MB Report
EGAF00005068491 fastq.gz 617.5 MB Report
EGAF00005068492 fastq.gz 628.5 MB Report
EGAF00005068493 fastq.gz 723.2 MB Report
EGAF00005068494 fastq.gz 736.2 MB Report
EGAF00005068495 fastq.gz 1.1 GB Report
EGAF00005068496 fastq.gz 937.2 MB Report
EGAF00005068497 fastq.gz 2.7 GB Report
EGAF00005068498 fastq.gz 2.7 GB Report
EGAF00005068499 fastq.gz 2.5 GB Report
EGAF00005068500 fastq.gz 2.6 GB Report
EGAF00005068501 fastq.gz 2.8 GB Report
EGAF00005068502 fastq.gz 2.9 GB Report
EGAF00005068503 fastq.gz 2.5 GB Report
EGAF00005068504 fastq.gz 2.6 GB Report
EGAF00005068505 fastq.gz 934.9 MB Report
EGAF00005068506 fastq.gz 778.6 MB Report
EGAF00005068507 fastq.gz 2.5 GB Report
EGAF00005068508 fastq.gz 2.6 GB Report
EGAF00005068509 fastq.gz 1.9 GB Report
EGAF00005068510 fastq.gz 2.0 GB Report
EGAF00005068511 fastq.gz 3.1 GB Report
EGAF00005068512 fastq.gz 3.2 GB Report
EGAF00005068513 fastq.gz 2.3 GB Report
EGAF00005068514 fastq.gz 2.4 GB Report
EGAF00005068515 fastq.gz 2.1 GB Report
EGAF00005068516 fastq.gz 2.2 GB Report
EGAF00005068517 fastq.gz 2.0 GB Report
EGAF00005068518 fastq.gz 2.0 GB Report
EGAF00005068519 fastq.gz 2.4 GB Report
EGAF00005068520 fastq.gz 2.5 GB Report
EGAF00005068521 fastq.gz 2.4 GB Report
EGAF00005068522 fastq.gz 2.4 GB Report
EGAF00005068523 fastq.gz 2.7 GB Report
EGAF00005068524 fastq.gz 2.8 GB Report
EGAF00005068525 fastq.gz 2.1 GB Report
EGAF00005068526 fastq.gz 2.2 GB Report
EGAF00005068527 fastq.gz 2.3 GB Report
EGAF00005068528 fastq.gz 2.4 GB Report
EGAF00005068529 fastq.gz 2.0 GB Report
EGAF00005068530 fastq.gz 2.1 GB Report
EGAF00005068531 fastq.gz 3.5 GB Report
EGAF00005068532 fastq.gz 3.6 GB Report
EGAF00005068533 fastq.gz 310.1 MB Report
EGAF00005068534 fastq.gz 317.5 MB Report
EGAF00005068535 fastq.gz 494.5 MB Report
EGAF00005068536 fastq.gz 500.0 MB Report
EGAF00005068537 fastq.gz 317.5 MB Report
EGAF00005068538 fastq.gz 324.5 MB Report
EGAF00005068539 fastq.gz 2.4 GB Report
EGAF00005068540 fastq.gz 2.5 GB Report
EGAF00005068541 fastq.gz 2.1 GB Report
EGAF00005068542 fastq.gz 2.2 GB Report
EGAF00005068543 fastq.gz 2.6 GB Report
EGAF00005068544 fastq.gz 2.6 GB Report
EGAF00005068545 fastq.gz 3.0 GB Report
EGAF00005068546 fastq.gz 3.0 GB Report
EGAF00005068547 fastq.gz 953.9 MB Report
EGAF00005068548 fastq.gz 973.8 MB Report
EGAF00005068549 fastq.gz 493.0 MB Report
EGAF00005068550 fastq.gz 394.5 MB Report
EGAF00005068551 fastq.gz 936.9 MB Report
EGAF00005068552 fastq.gz 955.4 MB Report
EGAF00005068553 fastq.gz 871.7 MB Report
EGAF00005068554 fastq.gz 731.3 MB Report
EGAF00005068555 fastq.gz 2.5 GB Report
EGAF00005068556 fastq.gz 2.6 GB Report
EGAF00005068557 fastq.gz 2.3 GB Report
EGAF00005068558 fastq.gz 2.3 GB Report
EGAF00005068559 fastq.gz 2.7 GB Report
EGAF00005068560 fastq.gz 2.7 GB Report
EGAF00005068561 fastq.gz 2.6 GB Report
EGAF00005068562 fastq.gz 2.6 GB Report
EGAF00005068563 fastq.gz 2.3 GB Report
EGAF00005068564 fastq.gz 2.4 GB Report
EGAF00005068565 fastq.gz 2.0 GB Report
EGAF00005068566 fastq.gz 2.0 GB Report
EGAF00005068567 fastq.gz 3.7 GB Report
EGAF00005068568 fastq.gz 3.8 GB Report
EGAF00005068569 fastq.gz 2.0 GB Report
EGAF00005068570 fastq.gz 2.0 GB Report
EGAF00005068571 fastq.gz 3.1 GB Report
EGAF00005068572 fastq.gz 3.2 GB Report
EGAF00005068573 fastq.gz 2.0 GB Report
EGAF00005068574 fastq.gz 2.0 GB Report
EGAF00005068575 fastq.gz 2.4 GB Report
EGAF00005068576 fastq.gz 2.4 GB Report
EGAF00005068577 fastq.gz 1.4 GB Report
EGAF00005068578 fastq.gz 1.4 GB Report
EGAF00005068579 fastq.gz 1.2 GB Report
EGAF00005068580 fastq.gz 1.3 GB Report
EGAF00005068581 fastq.gz 2.3 GB Report
EGAF00005068582 fastq.gz 2.4 GB Report
EGAF00005068583 fastq.gz 1.5 GB Report
EGAF00005068584 fastq.gz 1.6 GB Report
EGAF00005068585 fastq.gz 690.3 MB Report
EGAF00005068586 fastq.gz 563.0 MB Report
EGAF00005068587 fastq.gz 2.3 GB Report
EGAF00005068588 fastq.gz 2.4 GB Report
EGAF00005068589 fastq.gz 742.4 MB Report
EGAF00005068590 fastq.gz 614.8 MB Report
EGAF00005068591 fastq.gz 1.2 GB Report
EGAF00005068592 fastq.gz 1.2 GB Report
EGAF00005068593 fastq.gz 2.5 GB Report
EGAF00005068594 fastq.gz 2.6 GB Report
170 Files (338.3 GB)