About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS data subfolder HFF7VCCXY from multifocal ileal NETs study

This dataset includes linked-read whole-genome sequencing data (subfolder HFF7VCCXY) for multifocal ileal tumor samples from one patient. Samples were sequenced using the 10x Genomics linked-read whole-genome sequencing (WGS) approach.

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Data Access Agreement for WGS data subfolder HFF7VCCXY generated in Multifocal ileal NETs study

DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype data generated by the current study. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data from the 1958 British Birth Cohort or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 9. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 10. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 11. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 12. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 13. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 14. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 15. You accept that the Data is protected by and subject to international laws, including but not limited to the UK Data Protection Act 1998, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 16. This agreement shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004681 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004679225 fastq.gz 1.5 GB Report
EGAF00004679226 fastq.gz 1.6 GB Report
EGAF00004679227 fastq.gz 2.0 GB Report
EGAF00004679228 fastq.gz 2.1 GB Report
EGAF00004679229 fastq.gz 1.8 GB Report
EGAF00004679230 fastq.gz 1.9 GB Report
EGAF00004679231 fastq.gz 1.7 GB Report
EGAF00004679232 fastq.gz 1.9 GB Report
EGAF00004679233 fastq.gz 1.7 GB Report
EGAF00004679234 fastq.gz 1.9 GB Report
EGAF00004679235 fastq.gz 1.8 GB Report
EGAF00004679236 fastq.gz 2.0 GB Report
EGAF00004679237 fastq.gz 1.8 GB Report
EGAF00004679238 fastq.gz 1.9 GB Report
EGAF00004679239 fastq.gz 1.6 GB Report
EGAF00004679240 fastq.gz 1.7 GB Report
EGAF00005104742 fastq.gz 149.3 MB Report
EGAF00005104743 fastq.gz 156.7 MB Report
EGAF00005104744 fastq.gz 128.5 MB Report
EGAF00005104745 fastq.gz 1.7 GB Report
EGAF00005104746 fastq.gz 1.9 GB Report
EGAF00005104747 fastq.gz 144.7 MB Report
EGAF00005104748 fastq.gz 139.5 MB Report
EGAF00005104749 fastq.gz 157.6 MB Report
EGAF00005104750 fastq.gz 1.9 GB Report
EGAF00005104751 fastq.gz 2.0 GB Report
EGAF00005104752 fastq.gz 1.8 GB Report
EGAF00005104753 fastq.gz 1.9 GB Report
EGAF00005104754 fastq.gz 121.8 MB Report
EGAF00005104755 fastq.gz 122.6 MB Report
EGAF00005104756 fastq.gz 1.9 GB Report
EGAF00005104757 fastq.gz 2.1 GB Report
EGAF00005104758 fastq.gz 139.9 MB Report
EGAF00005104759 fastq.gz 139.1 MB Report
EGAF00005104760 fastq.gz 138.7 MB Report
EGAF00005104761 fastq.gz 1.8 GB Report
EGAF00005104762 fastq.gz 1.9 GB Report
EGAF00005104763 fastq.gz 1.8 GB Report
EGAF00005104764 fastq.gz 2.0 GB Report
EGAF00005104765 fastq.gz 1.6 GB Report
EGAF00005104766 fastq.gz 1.7 GB Report
EGAF00005104767 fastq.gz 166.3 MB Report
EGAF00005104768 fastq.gz 1.8 GB Report
EGAF00005104769 fastq.gz 2.0 GB Report
EGAF00005104770 fastq.gz 164.9 MB Report
EGAF00005104771 fastq.gz 1.8 GB Report
EGAF00005104772 fastq.gz 2.0 GB Report
EGAF00005104773 fastq.gz 1.6 GB Report
EGAF00005104774 fastq.gz 1.7 GB Report
EGAF00005104775 fastq.gz 121.8 MB Report
EGAF00005104776 fastq.gz 1.9 GB Report
EGAF00005104777 fastq.gz 2.0 GB Report
EGAF00005104778 fastq.gz 155.7 MB Report
EGAF00005104779 fastq.gz 128.6 MB Report
EGAF00005104780 fastq.gz 161.6 MB Report
EGAF00005104781 fastq.gz 1.7 GB Report
EGAF00005104782 fastq.gz 1.9 GB Report
EGAF00005104783 fastq.gz 1.7 GB Report
EGAF00005104784 fastq.gz 1.9 GB Report
EGAF00005104785 fastq.gz 140.4 MB Report
EGAF00005104786 fastq.gz 148.6 MB Report
EGAF00005104787 fastq.gz 129.5 MB Report
EGAF00005104788 fastq.gz 139.3 MB Report
EGAF00005104789 fastq.gz 165.1 MB Report
EGAF00005104790 fastq.gz 148.2 MB Report
EGAF00005104791 fastq.gz 138.6 MB Report
EGAF00005104792 fastq.gz 161.8 MB Report
EGAF00005104793 fastq.gz 165.2 MB Report
EGAF00005104794 fastq.gz 2.0 GB Report
EGAF00005104795 fastq.gz 2.2 GB Report
EGAF00005104796 fastq.gz 121.8 MB Report
EGAF00005104797 fastq.gz 2.0 GB Report
EGAF00005104798 fastq.gz 2.2 GB Report
EGAF00005104799 fastq.gz 1.8 GB Report
EGAF00005104800 fastq.gz 2.0 GB Report
EGAF00005104801 fastq.gz 1.7 GB Report
EGAF00005104802 fastq.gz 1.8 GB Report
EGAF00005104803 fastq.gz 1.7 GB Report
EGAF00005104804 fastq.gz 1.9 GB Report
EGAF00005104805 fastq.gz 1.8 GB Report
EGAF00005104806 fastq.gz 2.0 GB Report
EGAF00005104807 fastq.gz 1.7 GB Report
EGAF00005104808 fastq.gz 1.8 GB Report
EGAF00005104809 fastq.gz 138.4 MB Report
EGAF00005104810 fastq.gz 1.9 GB Report
EGAF00005104811 fastq.gz 2.0 GB Report
EGAF00005104812 fastq.gz 128.3 MB Report
EGAF00005104813 fastq.gz 139.1 MB Report
EGAF00005104814 fastq.gz 156.6 MB Report
EGAF00005104815 fastq.gz 2.0 GB Report
EGAF00005104816 fastq.gz 2.2 GB Report
EGAF00005104817 fastq.gz 156.5 MB Report
EGAF00005104818 fastq.gz 162.0 MB Report
EGAF00005104819 fastq.gz 145.4 MB Report
EGAF00005104820 fastq.gz 155.4 MB Report
EGAF00005104821 fastq.gz 144.3 MB Report
EGAF00005104822 fastq.gz 148.5 MB Report
EGAF00005104823 fastq.gz 1.8 GB Report
EGAF00005104824 fastq.gz 2.0 GB Report
EGAF00005104825 fastq.gz 144.4 MB Report
EGAF00005104826 fastq.gz 2.0 GB Report
EGAF00005104827 fastq.gz 2.2 GB Report
EGAF00005104828 fastq.gz 140.2 MB Report
EGAF00005104829 fastq.gz 1.5 GB Report
EGAF00005104830 fastq.gz 1.6 GB Report
EGAF00005104831 fastq.gz 1.5 GB Report
EGAF00005104832 fastq.gz 1.6 GB Report
EGAF00005104833 fastq.gz 2.0 GB Report
EGAF00005104834 fastq.gz 2.2 GB Report
EGAF00005104835 fastq.gz 2.0 GB Report
EGAF00005104836 fastq.gz 2.2 GB Report
EGAF00005104837 fastq.gz 1.5 GB Report
EGAF00005104838 fastq.gz 1.6 GB Report
EGAF00005104839 fastq.gz 2.0 GB Report
EGAF00005104840 fastq.gz 2.2 GB Report
EGAF00005104841 fastq.gz 141.4 MB Report
EGAF00005104842 fastq.gz 140.2 MB Report
EGAF00005104843 fastq.gz 162.8 MB Report
EGAF00005104844 fastq.gz 1.7 GB Report
EGAF00005104845 fastq.gz 1.9 GB Report
EGAF00005104846 fastq.gz 1.7 GB Report
EGAF00005104847 fastq.gz 1.8 GB Report
EGAF00005104848 fastq.gz 1.6 GB Report
EGAF00005104849 fastq.gz 1.7 GB Report
EGAF00005104850 fastq.gz 1.7 GB Report
EGAF00005104851 fastq.gz 1.8 GB Report
EGAF00005104852 fastq.gz 156.5 MB Report
EGAF00005104853 fastq.gz 1.7 GB Report
EGAF00005104854 fastq.gz 1.9 GB Report
EGAF00005104855 fastq.gz 1.8 GB Report
EGAF00005104856 fastq.gz 2.0 GB Report
EGAF00005104857 fastq.gz 156.6 MB Report
132 Files (169.6 GB)