About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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sWGS on cfDNA and matching tumor DNA in pediatric cancer

This dataset contains shallow whole genome sequencing data from paired cfDNA - tumor DNA samples of various pediatric cancer entities (total 215 samples). Files are provided in fastq format. Samples were sequenced on an Ion Proton sequencer (Thermo Fisher Scientific) or a Hiseq3000 (Illumina). Data analysis is available at https://github.com/rmvpaeme/sWGS_pediatric_cancer.

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DAC Tech Transfer / Ghent University / Center For Medical Genetics Ghent

Access to the data will be provided after signing a Data Transfer Agreement (DTA) between UGent and the requesting party. For more information, please contact the DAC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005198 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005189201 fastq.gz 5.2 GB Report
EGAF00005189202 fastq.gz 3.8 GB Report
EGAF00005189203 fastq.gz 4.9 GB Report
EGAF00005189204 fastq.gz 3.5 GB Report
EGAF00005189205 fastq.gz 5.2 GB Report
EGAF00005189206 fastq.gz 6.3 GB Report
EGAF00005189207 fastq.gz 5.9 GB Report
EGAF00005189208 fastq.gz 885.0 MB Report
EGAF00005189209 fastq.gz 1.1 GB Report
EGAF00005189210 fastq.gz 519.1 MB Report
EGAF00005189211 fastq.gz 1.2 GB Report
EGAF00005189212 fastq.gz 677.9 MB Report
EGAF00005189213 fastq.gz 523.4 MB Report
EGAF00005189214 fastq.gz 1.8 GB Report
EGAF00005189215 fastq.gz 4.4 GB Report
EGAF00005189216 fastq.gz 576.8 MB Report
EGAF00005189217 fastq.gz 563.9 MB Report
EGAF00005189218 fastq.gz 1.9 GB Report
EGAF00005189219 fastq.gz 3.0 GB Report
EGAF00005189220 fastq.gz 2.3 GB Report
EGAF00005189221 fastq.gz 752.8 MB Report
EGAF00005189222 fastq.gz 1.5 GB Report
EGAF00005189223 fastq.gz 1.0 GB Report
EGAF00005189224 fastq.gz 1.4 GB Report
EGAF00005189225 fastq.gz 1.1 GB Report
EGAF00005189226 fastq.gz 983.4 MB Report
EGAF00005189227 fastq.gz 811.1 MB Report
EGAF00005189228 fastq.gz 887.5 MB Report
EGAF00005189229 fastq.gz 669.9 MB Report
EGAF00005189230 fastq.gz 767.0 MB Report
EGAF00005189231 fastq.gz 1.4 GB Report
EGAF00005189232 fastq.gz 576.6 MB Report
EGAF00005189233 fastq.gz 944.5 MB Report
EGAF00005189234 fastq.gz 634.0 MB Report
EGAF00005189235 fastq.gz 2.0 GB Report
EGAF00005189236 fastq.gz 2.2 GB Report
EGAF00005189237 fastq.gz 733.9 MB Report
EGAF00005189238 fastq.gz 751.2 MB Report
EGAF00005189239 fastq.gz 2.2 GB Report
EGAF00005189240 fastq.gz 2.5 GB Report
EGAF00005189241 fastq.gz 2.0 GB Report
EGAF00005189242 fastq.gz 570.3 MB Report
EGAF00005189243 fastq.gz 655.3 MB Report
EGAF00005189244 fastq.gz 560.0 MB Report
EGAF00005189245 fastq.gz 812.7 MB Report
EGAF00005189246 fastq.gz 1.0 GB Report
EGAF00005189247 fastq.gz 683.2 MB Report
EGAF00005189248 fastq.gz 1.1 GB Report
EGAF00005189249 fastq.gz 1.1 GB Report
EGAF00005189250 fastq.gz 1.2 GB Report
EGAF00005189251 fastq.gz 1.1 GB Report
EGAF00005189252 fastq.gz 4.5 GB Report
EGAF00005189253 fastq.gz 2.4 GB Report
EGAF00005189254 fastq.gz 3.1 GB Report
EGAF00005189255 fastq.gz 3.4 GB Report
EGAF00005189256 fastq.gz 662.1 MB Report
EGAF00005189257 fastq.gz 651.0 MB Report
EGAF00005189258 fastq.gz 657.9 MB Report
EGAF00005189259 fastq.gz 740.9 MB Report
EGAF00005189260 fastq.gz 882.3 MB Report
EGAF00005189261 fastq.gz 767.4 MB Report
EGAF00005189262 fastq.gz 644.4 MB Report
EGAF00005189263 fastq.gz 774.8 MB Report
EGAF00005189264 fastq.gz 723.4 MB Report
EGAF00005189265 fastq.gz 1.1 GB Report
EGAF00005189266 fastq.gz 1.3 GB Report
EGAF00005189267 fastq.gz 635.6 MB Report
EGAF00005189268 fastq.gz 3.5 GB Report
EGAF00005189269 fastq.gz 1.0 GB Report
EGAF00005189270 fastq.gz 4.4 GB Report
EGAF00005189271 fastq.gz 4.2 GB Report
EGAF00005189272 fastq.gz 4.9 GB Report
EGAF00005189273 fastq.gz 5.3 GB Report
EGAF00005189274 fastq.gz 771.9 MB Report
EGAF00005189275 fastq.gz 812.1 MB Report
EGAF00005189276 fastq.gz 524.3 MB Report
EGAF00005189277 fastq.gz 4.5 GB Report
EGAF00005189278 fastq.gz 492.8 MB Report
EGAF00005189279 fastq.gz 1.2 GB Report
EGAF00005189280 fastq.gz 780.5 MB Report
EGAF00005189281 fastq.gz 690.4 MB Report
EGAF00005189282 fastq.gz 771.7 MB Report
EGAF00005189283 fastq.gz 554.1 MB Report
EGAF00005189284 fastq.gz 771.6 MB Report
EGAF00005189285 fastq.gz 1.1 GB Report
EGAF00005189286 fastq.gz 2.5 GB Report
EGAF00005189287 fastq.gz 787.9 MB Report
EGAF00005189288 fastq.gz 1.9 GB Report
EGAF00005189289 fastq.gz 4.9 GB Report
EGAF00005189290 fastq.gz 4.3 GB Report
EGAF00005189291 fastq.gz 343.5 MB Report
EGAF00005189292 fastq.gz 2.0 GB Report
EGAF00005189293 fastq.gz 1.7 GB Report
EGAF00005189294 fastq.gz 758.9 MB Report
EGAF00005189295 fastq.gz 639.5 MB Report
EGAF00005189296 fastq.gz 851.2 MB Report
EGAF00005189297 fastq.gz 764.2 MB Report
EGAF00005189298 fastq.gz 1.3 GB Report
EGAF00005189299 fastq.gz 702.6 MB Report
EGAF00005189300 fastq.gz 732.2 MB Report
EGAF00005189301 fastq.gz 1.9 GB Report
EGAF00005189302 fastq.gz 677.5 MB Report
EGAF00005189303 fastq.gz 1.4 GB Report
EGAF00005189304 fastq.gz 755.9 MB Report
EGAF00005189305 fastq.gz 659.8 MB Report
EGAF00005189306 fastq.gz 1.2 GB Report
EGAF00005189307 fastq.gz 526.8 MB Report
EGAF00005189308 fastq.gz 567.2 MB Report
EGAF00005189309 fastq.gz 573.9 MB Report
EGAF00005189310 fastq.gz 480.8 MB Report
EGAF00005189311 fastq.gz 445.0 MB Report
EGAF00005189312 fastq.gz 621.9 MB Report
EGAF00005189313 fastq.gz 526.8 MB Report
EGAF00005189314 fastq.gz 616.6 MB Report
EGAF00005189315 fastq.gz 559.3 MB Report
EGAF00005189316 fastq.gz 528.7 MB Report
EGAF00005189317 fastq.gz 831.5 MB Report
EGAF00005189318 fastq.gz 952.3 MB Report
EGAF00005189319 fastq.gz 757.4 MB Report
EGAF00005189320 fastq.gz 1.3 GB Report
EGAF00005189321 fastq.gz 653.9 MB Report
EGAF00005189322 fastq.gz 720.8 MB Report
EGAF00005189323 fastq.gz 830.9 MB Report
EGAF00005189324 fastq.gz 820.5 MB Report
EGAF00005189325 fastq.gz 945.8 MB Report
EGAF00005189326 fastq.gz 1.3 GB Report
EGAF00005189327 fastq.gz 716.5 MB Report
EGAF00005189328 fastq.gz 821.3 MB Report
EGAF00005189329 fastq.gz 1.0 GB Report
EGAF00005189330 fastq.gz 1.0 GB Report
EGAF00005189331 fastq.gz 817.0 MB Report
EGAF00005189332 fastq.gz 444.9 MB Report
EGAF00005189333 fastq.gz 4.4 GB Report
EGAF00005189334 fastq.gz 1.0 GB Report
EGAF00005189335 fastq.gz 1.1 GB Report
EGAF00005189336 fastq.gz 1.3 GB Report
EGAF00005189337 fastq.gz 2.4 GB Report
EGAF00005189338 fastq.gz 1.9 GB Report
EGAF00005189339 fastq.gz 608.1 MB Report
EGAF00005189340 fastq.gz 689.9 MB Report
EGAF00005189341 fastq.gz 2.3 GB Report
EGAF00005189342 fastq.gz 677.0 MB Report
EGAF00005189343 fastq.gz 677.7 MB Report
EGAF00005189344 fastq.gz 361.7 MB Report
EGAF00005189345 fastq.gz 358.3 MB Report
EGAF00005189346 fastq.gz 1.8 GB Report
EGAF00005189347 fastq.gz 1.5 GB Report
EGAF00005189348 fastq.gz 3.7 GB Report
EGAF00005189349 fastq.gz 2.3 GB Report
EGAF00005189350 fastq.gz 1.9 GB Report
EGAF00005189351 fastq.gz 2.0 GB Report
EGAF00005189352 fastq.gz 1.8 GB Report
EGAF00005189353 fastq.gz 833.3 MB Report
EGAF00005189354 fastq.gz 647.6 MB Report
EGAF00005189355 fastq.gz 1.7 GB Report
EGAF00005189356 fastq.gz 1.4 GB Report
EGAF00005189357 fastq.gz 764.7 MB Report
EGAF00005189358 fastq.gz 774.5 MB Report
EGAF00005189359 fastq.gz 1.1 GB Report
EGAF00005189360 fastq.gz 772.0 MB Report
EGAF00005189361 fastq.gz 816.3 MB Report
EGAF00005189362 fastq.gz 651.1 MB Report
EGAF00005189363 fastq.gz 561.4 MB Report
EGAF00005189364 fastq.gz 2.0 GB Report
EGAF00005189365 fastq.gz 2.2 GB Report
EGAF00005189366 fastq.gz 624.6 MB Report
EGAF00005189367 fastq.gz 764.4 MB Report
EGAF00005189368 fastq.gz 551.1 MB Report
EGAF00005189369 fastq.gz 2.0 GB Report
EGAF00005189370 fastq.gz 493.9 MB Report
EGAF00005189371 fastq.gz 460.8 MB Report
EGAF00005189372 fastq.gz 374.5 MB Report
EGAF00005189373 fastq.gz 697.9 MB Report
EGAF00005189374 fastq.gz 869.9 MB Report
EGAF00005189375 fastq.gz 2.4 GB Report
EGAF00005189376 fastq.gz 1.3 GB Report
EGAF00005189377 fastq.gz 2.2 GB Report
EGAF00005189378 fastq.gz 1.9 GB Report
EGAF00005189379 fastq.gz 840.9 MB Report
EGAF00005189380 fastq.gz 804.8 MB Report
EGAF00005189381 fastq.gz 1.9 GB Report
EGAF00005189382 fastq.gz 683.6 MB Report
EGAF00005189383 fastq.gz 1.9 GB Report
EGAF00005189384 fastq.gz 755.8 MB Report
EGAF00005189385 fastq.gz 1.0 GB Report
EGAF00005189386 fastq.gz 3.4 GB Report
EGAF00005189387 fastq.gz 3.5 GB Report
EGAF00005189388 fastq.gz 2.9 GB Report
EGAF00005189389 fastq.gz 3.7 GB Report
EGAF00005189390 fastq.gz 832.6 MB Report
EGAF00005189391 fastq.gz 999.0 MB Report
EGAF00005189392 fastq.gz 1.3 GB Report
EGAF00005189393 fastq.gz 3.7 GB Report
EGAF00005189394 fastq.gz 3.8 GB Report
EGAF00005189395 fastq.gz 2.9 GB Report
EGAF00005189396 fastq.gz 1.7 GB Report
EGAF00005189397 fastq.gz 1.5 GB Report
EGAF00005189398 fastq.gz 697.6 MB Report
EGAF00005189399 fastq.gz 2.7 GB Report
EGAF00005189400 fastq.gz 2.7 GB Report
EGAF00005189401 fastq.gz 4.0 GB Report
EGAF00005189402 fastq.gz 679.7 MB Report
EGAF00005189403 fastq.gz 750.6 MB Report
EGAF00005189404 fastq.gz 692.2 MB Report
EGAF00005189405 fastq.gz 835.1 MB Report
EGAF00005189406 fastq.gz 6.0 GB Report
EGAF00005189407 fastq.gz 2.0 GB Report
EGAF00005189408 fastq.gz 1.9 GB Report
EGAF00005189409 fastq.gz 428.0 MB Report
EGAF00005189410 fastq.gz 571.5 MB Report
EGAF00005189411 fastq.gz 2.9 GB Report
EGAF00005189412 fastq.gz 605.8 MB Report
EGAF00005189413 fastq.gz 488.2 MB Report
EGAF00005189414 fastq.gz 1.4 GB Report
EGAF00005189415 fastq.gz 890.9 MB Report
215 Files (328.3 GB)