sWGS on cfDNA and matching tumor DNA in pediatric cancer

Dataset ID Technology Samples
EGAD00001007508 Illumina HiSeq 3000,Ion Torrent Proton 215

Dataset Description

This dataset contains shallow whole genome sequencing data from paired cfDNA - tumor DNA samples of various pediatric cancer entities (total 215 samples). Files are provided in fastq format. Samples were sequenced on an Ion Proton sequencer (Thermo Fisher Scientific) or a Hiseq3000 (Illumina). Data analysis is available at

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DAC Tech Transfer - Ghent University
Contact person: Katleen De Preter
Email: katleen [dot] depreter [at] ugent [dot] be
More details: EGAC00001002060


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