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sWGS on cfDNA and matching tumor DNA in pediatric cancer

This dataset contains shallow whole genome sequencing data from paired cfDNA - tumor DNA samples of various pediatric cancer entities (total 215 samples). Files are provided in fastq format. Samples were sequenced on an Ion Proton sequencer (Thermo Fisher Scientific) or a Hiseq3000 (Illumina). Data analysis is available at https://github.com/rmvpaeme/sWGS_pediatric_cancer.

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DAC Tech Transfer / Ghent University / Center For Medical Genetics Ghent

Access to the data will be provided after signing a Data Transfer Agreement (DTA) between UGent and the requesting party. For more information, please contact the DAC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005198 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005189201 fastq.gz 5.2 GB
EGAF00005189202 fastq.gz 3.8 GB
EGAF00005189203 fastq.gz 4.9 GB
EGAF00005189204 fastq.gz 3.5 GB
EGAF00005189205 fastq.gz 5.2 GB
EGAF00005189206 fastq.gz 6.3 GB
EGAF00005189207 fastq.gz 5.9 GB
EGAF00005189208 fastq.gz 885.0 MB
EGAF00005189209 fastq.gz 1.1 GB
EGAF00005189210 fastq.gz 519.1 MB
EGAF00005189211 fastq.gz 1.2 GB
EGAF00005189212 fastq.gz 677.9 MB
EGAF00005189213 fastq.gz 523.4 MB
EGAF00005189214 fastq.gz 1.8 GB
EGAF00005189215 fastq.gz 4.4 GB
EGAF00005189216 fastq.gz 576.8 MB
EGAF00005189217 fastq.gz 563.9 MB
EGAF00005189218 fastq.gz 1.9 GB
EGAF00005189219 fastq.gz 3.0 GB
EGAF00005189220 fastq.gz 2.3 GB
EGAF00005189221 fastq.gz 752.8 MB
EGAF00005189222 fastq.gz 1.5 GB
EGAF00005189223 fastq.gz 1.0 GB
EGAF00005189224 fastq.gz 1.4 GB
EGAF00005189225 fastq.gz 1.1 GB
EGAF00005189226 fastq.gz 983.4 MB
EGAF00005189227 fastq.gz 811.1 MB
EGAF00005189228 fastq.gz 887.5 MB
EGAF00005189229 fastq.gz 669.9 MB
EGAF00005189230 fastq.gz 767.0 MB
EGAF00005189231 fastq.gz 1.4 GB
EGAF00005189232 fastq.gz 576.6 MB
EGAF00005189233 fastq.gz 944.5 MB
EGAF00005189234 fastq.gz 634.0 MB
EGAF00005189235 fastq.gz 2.0 GB
EGAF00005189236 fastq.gz 2.2 GB
EGAF00005189237 fastq.gz 733.9 MB
EGAF00005189238 fastq.gz 751.2 MB
EGAF00005189239 fastq.gz 2.2 GB
EGAF00005189240 fastq.gz 2.5 GB
EGAF00005189241 fastq.gz 2.0 GB
EGAF00005189242 fastq.gz 570.3 MB
EGAF00005189243 fastq.gz 655.3 MB
EGAF00005189244 fastq.gz 560.0 MB
EGAF00005189245 fastq.gz 812.7 MB
EGAF00005189246 fastq.gz 1.0 GB
EGAF00005189247 fastq.gz 683.2 MB
EGAF00005189248 fastq.gz 1.1 GB
EGAF00005189249 fastq.gz 1.1 GB
EGAF00005189250 fastq.gz 1.2 GB
EGAF00005189251 fastq.gz 1.1 GB
EGAF00005189252 fastq.gz 4.5 GB
EGAF00005189253 fastq.gz 2.4 GB
EGAF00005189254 fastq.gz 3.1 GB
EGAF00005189255 fastq.gz 3.4 GB
EGAF00005189256 fastq.gz 662.1 MB
EGAF00005189257 fastq.gz 651.0 MB
EGAF00005189258 fastq.gz 657.9 MB
EGAF00005189259 fastq.gz 740.9 MB
EGAF00005189260 fastq.gz 882.3 MB
EGAF00005189261 fastq.gz 767.4 MB
EGAF00005189262 fastq.gz 644.4 MB
EGAF00005189263 fastq.gz 774.8 MB
EGAF00005189264 fastq.gz 723.4 MB
EGAF00005189265 fastq.gz 1.1 GB
EGAF00005189266 fastq.gz 1.3 GB
EGAF00005189267 fastq.gz 635.6 MB
EGAF00005189268 fastq.gz 3.5 GB
EGAF00005189269 fastq.gz 1.0 GB
EGAF00005189270 fastq.gz 4.4 GB
EGAF00005189271 fastq.gz 4.2 GB
EGAF00005189272 fastq.gz 4.9 GB
EGAF00005189273 fastq.gz 5.3 GB
EGAF00005189274 fastq.gz 771.9 MB
EGAF00005189275 fastq.gz 812.1 MB
EGAF00005189276 fastq.gz 524.3 MB
EGAF00005189277 fastq.gz 4.5 GB
EGAF00005189278 fastq.gz 492.8 MB
EGAF00005189279 fastq.gz 1.2 GB
EGAF00005189280 fastq.gz 780.5 MB
EGAF00005189281 fastq.gz 690.4 MB
EGAF00005189282 fastq.gz 771.7 MB
EGAF00005189283 fastq.gz 554.1 MB
EGAF00005189284 fastq.gz 771.6 MB
EGAF00005189285 fastq.gz 1.1 GB
EGAF00005189286 fastq.gz 2.5 GB
EGAF00005189287 fastq.gz 787.9 MB
EGAF00005189288 fastq.gz 1.9 GB
EGAF00005189289 fastq.gz 4.9 GB
EGAF00005189290 fastq.gz 4.3 GB
EGAF00005189291 fastq.gz 343.5 MB
EGAF00005189292 fastq.gz 2.0 GB
EGAF00005189293 fastq.gz 1.7 GB
EGAF00005189294 fastq.gz 758.9 MB
EGAF00005189295 fastq.gz 639.5 MB
EGAF00005189296 fastq.gz 851.2 MB
EGAF00005189297 fastq.gz 764.2 MB
EGAF00005189298 fastq.gz 1.3 GB
EGAF00005189299 fastq.gz 702.6 MB
EGAF00005189300 fastq.gz 732.2 MB
EGAF00005189301 fastq.gz 1.9 GB
EGAF00005189302 fastq.gz 677.5 MB
EGAF00005189303 fastq.gz 1.4 GB
EGAF00005189304 fastq.gz 755.9 MB
EGAF00005189305 fastq.gz 659.8 MB
EGAF00005189306 fastq.gz 1.2 GB
EGAF00005189307 fastq.gz 526.8 MB
EGAF00005189308 fastq.gz 567.2 MB
EGAF00005189309 fastq.gz 573.9 MB
EGAF00005189310 fastq.gz 480.8 MB
EGAF00005189311 fastq.gz 445.0 MB
EGAF00005189312 fastq.gz 621.9 MB
EGAF00005189313 fastq.gz 526.8 MB
EGAF00005189314 fastq.gz 616.6 MB
EGAF00005189315 fastq.gz 559.3 MB
EGAF00005189316 fastq.gz 528.7 MB
EGAF00005189317 fastq.gz 831.5 MB
EGAF00005189318 fastq.gz 952.3 MB
EGAF00005189319 fastq.gz 757.4 MB
EGAF00005189320 fastq.gz 1.3 GB
EGAF00005189321 fastq.gz 653.9 MB
EGAF00005189322 fastq.gz 720.8 MB
EGAF00005189323 fastq.gz 830.9 MB
EGAF00005189324 fastq.gz 820.5 MB
EGAF00005189325 fastq.gz 945.8 MB
EGAF00005189326 fastq.gz 1.3 GB
EGAF00005189327 fastq.gz 716.5 MB
EGAF00005189328 fastq.gz 821.3 MB
EGAF00005189329 fastq.gz 1.0 GB
EGAF00005189330 fastq.gz 1.0 GB
EGAF00005189331 fastq.gz 817.0 MB
EGAF00005189332 fastq.gz 444.9 MB
EGAF00005189333 fastq.gz 4.4 GB
EGAF00005189334 fastq.gz 1.0 GB
EGAF00005189335 fastq.gz 1.1 GB
EGAF00005189336 fastq.gz 1.3 GB
EGAF00005189337 fastq.gz 2.4 GB
EGAF00005189338 fastq.gz 1.9 GB
EGAF00005189339 fastq.gz 608.1 MB
EGAF00005189340 fastq.gz 689.9 MB
EGAF00005189341 fastq.gz 2.3 GB
EGAF00005189342 fastq.gz 677.0 MB
EGAF00005189343 fastq.gz 677.7 MB
EGAF00005189344 fastq.gz 361.7 MB
EGAF00005189345 fastq.gz 358.3 MB
EGAF00005189346 fastq.gz 1.8 GB
EGAF00005189347 fastq.gz 1.5 GB
EGAF00005189348 fastq.gz 3.7 GB
EGAF00005189349 fastq.gz 2.3 GB
EGAF00005189350 fastq.gz 1.9 GB
EGAF00005189351 fastq.gz 2.0 GB
EGAF00005189352 fastq.gz 1.8 GB
EGAF00005189353 fastq.gz 833.3 MB
EGAF00005189354 fastq.gz 647.6 MB
EGAF00005189355 fastq.gz 1.7 GB
EGAF00005189356 fastq.gz 1.4 GB
EGAF00005189357 fastq.gz 764.7 MB
EGAF00005189358 fastq.gz 774.5 MB
EGAF00005189359 fastq.gz 1.1 GB
EGAF00005189360 fastq.gz 772.0 MB
EGAF00005189361 fastq.gz 816.3 MB
EGAF00005189362 fastq.gz 651.1 MB
EGAF00005189363 fastq.gz 561.4 MB
EGAF00005189364 fastq.gz 2.0 GB
EGAF00005189365 fastq.gz 2.2 GB
EGAF00005189366 fastq.gz 624.6 MB
EGAF00005189367 fastq.gz 764.4 MB
EGAF00005189368 fastq.gz 551.1 MB
EGAF00005189369 fastq.gz 2.0 GB
EGAF00005189370 fastq.gz 493.9 MB
EGAF00005189371 fastq.gz 460.8 MB
EGAF00005189372 fastq.gz 374.5 MB
EGAF00005189373 fastq.gz 697.9 MB
EGAF00005189374 fastq.gz 869.9 MB
EGAF00005189375 fastq.gz 2.4 GB
EGAF00005189376 fastq.gz 1.3 GB
EGAF00005189377 fastq.gz 2.2 GB
EGAF00005189378 fastq.gz 1.9 GB
EGAF00005189379 fastq.gz 840.9 MB
EGAF00005189380 fastq.gz 804.8 MB
EGAF00005189381 fastq.gz 1.9 GB
EGAF00005189382 fastq.gz 683.6 MB
EGAF00005189383 fastq.gz 1.9 GB
EGAF00005189384 fastq.gz 755.8 MB
EGAF00005189385 fastq.gz 1.0 GB
EGAF00005189386 fastq.gz 3.4 GB
EGAF00005189387 fastq.gz 3.5 GB
EGAF00005189388 fastq.gz 2.9 GB
EGAF00005189389 fastq.gz 3.7 GB
EGAF00005189390 fastq.gz 832.6 MB
EGAF00005189391 fastq.gz 999.0 MB
EGAF00005189392 fastq.gz 1.3 GB
EGAF00005189393 fastq.gz 3.7 GB
EGAF00005189394 fastq.gz 3.8 GB
EGAF00005189395 fastq.gz 2.9 GB
EGAF00005189396 fastq.gz 1.7 GB
EGAF00005189397 fastq.gz 1.5 GB
EGAF00005189398 fastq.gz 697.6 MB
EGAF00005189399 fastq.gz 2.7 GB
EGAF00005189400 fastq.gz 2.7 GB
EGAF00005189401 fastq.gz 4.0 GB
EGAF00005189402 fastq.gz 679.7 MB
EGAF00005189403 fastq.gz 750.6 MB
EGAF00005189404 fastq.gz 692.2 MB
EGAF00005189405 fastq.gz 835.1 MB
EGAF00005189406 fastq.gz 6.0 GB
EGAF00005189407 fastq.gz 2.0 GB
EGAF00005189408 fastq.gz 1.9 GB
EGAF00005189409 fastq.gz 428.0 MB
EGAF00005189410 fastq.gz 571.5 MB
EGAF00005189411 fastq.gz 2.9 GB
EGAF00005189412 fastq.gz 605.8 MB
EGAF00005189413 fastq.gz 488.2 MB
EGAF00005189414 fastq.gz 1.4 GB
EGAF00005189415 fastq.gz 890.9 MB
215 Files (328.3 GB)