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HIV positive individuals (first batch)

Contains 30x coverage whole genome sequence data from 40 HIV+ South Africans. Samples sequenced using Illumina HiSeq. BAM files have been uploaded. Sequenced at Edinburgh Genomics.

Request Access

Data Access Committee for the University of the Witwatersrand, Johannesburg

Data requesters will need to provide (a) the name and qualifications of the responsible person, (b) publicly viewable research profile (e.g., GoogleScholar, MyNCBI, ORCID) to show that the requester has the necessary capacity to manage the data; (c) envisaged research question and brief research protocol; (d) measures that will be taken to protect the data (e) commitment to use the data according to the conditions authorisation given. A formal data transfer agreement will need to be signed between the University and the responsible person’s institution. The requester will need to provide evidence of approval from an appropriate ethics committee/review board. If necessary, we may require further ethics approval. Data requests that directly compete with the existing research projects of the data provider and/or other individuals who have been granted access to the data are welcome but may be subject to an embargo period. Publications using the data would be required to acknowledge the source of the data and funders. In general, the data providers would not be authors on any papers unless a collaboration is specifically agreed to.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005245 Other
ID File Type Size Located in
EGAF00005214263 bam 209.3 GB
EGAF00005214264 bam 217.0 GB
EGAF00005214265 bam 213.2 GB
EGAF00005214266 bam 201.9 GB
EGAF00005214267 bam 196.2 GB
EGAF00005214268 bam 177.6 GB
EGAF00005214269 bam 195.3 GB
EGAF00005214270 bam 183.0 GB
EGAF00005214271 bam 205.5 GB
EGAF00005214272 bam 209.1 GB
EGAF00005214273 bam 220.6 GB
EGAF00005214274 bam 201.0 GB
EGAF00005214275 bam 203.3 GB
EGAF00005214276 bam 204.4 GB
EGAF00005214277 bam 190.8 GB
EGAF00005214278 bam 170.7 GB
EGAF00005214279 bam 212.7 GB
EGAF00005214280 bam 198.4 GB
EGAF00005214281 bam 207.8 GB
EGAF00005214282 bam 179.9 GB
EGAF00005214283 bam 203.4 GB
EGAF00005214284 bam 204.2 GB
EGAF00005214285 bam 193.7 GB
EGAF00005214286 bam 208.2 GB
EGAF00005214287 bam 211.6 GB
EGAF00005214288 bam 217.4 GB
EGAF00005214289 bam 215.9 GB
EGAF00005214290 bam 204.5 GB
EGAF00005214291 bam 204.6 GB
EGAF00005214292 bam 214.9 GB
EGAF00005214293 bam 211.3 GB
EGAF00005214294 bam 210.8 GB
EGAF00005214295 bam 206.2 GB
EGAF00005214296 bam 214.4 GB
EGAF00005214297 bam 213.8 GB
EGAF00005214298 bam 205.1 GB
EGAF00005214299 bam 196.8 GB
EGAF00005214300 bam 189.5 GB
EGAF00005214301 bam 191.4 GB
EGAF00005214302 bam 204.6 GB
40 Files (8.1 TB)