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Single cell ATAC sequencing

Paired-end fastq files of 22 AML and 2 normal bone marrow samples were generated using 10x Genomics single cell ATAC sequencing following manufacturer's protocol (CG000168 User Guide RevB) for chemistry version 1.0 and targeting 10000 nuclei per sample. Libraries were sequenced using Illumina HiSeq4000 using recommended cycling parameters.

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Department of Genomic Medicine Data Access Agreement

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the ____ day of _________________, 20__ (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and ________________________________ (“Recipient”) on behalf of its investigator _______ (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute ________________ (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of _______________ (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Genomic Medicine (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 2 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Recipient Scientist: Provider Scientist: [Insert Name and Title Here] [Insert Name and Title Here] Date: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004894 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005284766 fastq.gz 2.0 GB
EGAF00005284767 fastq.gz 12.5 GB
EGAF00005284770 fastq.gz 10.7 GB
EGAF00005284771 fastq.gz 5.3 GB
EGAF00005284772 fastq.gz 1.9 GB
EGAF00005284773 fastq.gz 19.0 GB
EGAF00005284776 fastq.gz 2.0 GB
EGAF00005284777 fastq.gz 20.2 GB
EGAF00005284778 fastq.gz 18.7 GB
EGAF00005284779 fastq.gz 5.1 GB
EGAF00005284787 fastq.gz 2.0 GB
EGAF00005284788 fastq.gz 11.8 GB
EGAF00005284789 fastq.gz 10.9 GB
EGAF00005284790 fastq.gz 5.5 GB
EGAF00005284791 fastq.gz 2.0 GB
EGAF00005284792 fastq.gz 12.0 GB
EGAF00005284803 fastq.gz 10.8 GB
EGAF00005284804 fastq.gz 5.5 GB
EGAF00005284807 fastq.gz 11.3 GB
EGAF00005284808 fastq.gz 5.8 GB
EGAF00005284809 fastq.gz 1.9 GB
EGAF00005284810 fastq.gz 19.0 GB
EGAF00005284813 fastq.gz 11.3 GB
EGAF00005284814 fastq.gz 5.4 GB
EGAF00005284817 fastq.gz 2.0 GB
EGAF00005284818 fastq.gz 12.4 GB
EGAF00005284819 fastq.gz 2.0 GB
EGAF00005284820 fastq.gz 19.2 GB
EGAF00005284821 fastq.gz 18.7 GB
EGAF00005284822 fastq.gz 5.2 GB
EGAF00005284825 fastq.gz 2.1 GB
EGAF00005284826 fastq.gz 12.2 GB
EGAF00005284853 fastq.gz 1.9 GB
EGAF00005284854 fastq.gz 11.8 GB
EGAF00005284858 fastq.gz 10.8 GB
EGAF00005284859 fastq.gz 5.4 GB
EGAF00005284863 fastq.gz 1.9 GB
EGAF00005284864 fastq.gz 11.8 GB
EGAF00005284866 fastq.gz 11.6 GB
EGAF00005284867 fastq.gz 5.8 GB
EGAF00005284868 fastq.gz 2.0 GB
EGAF00005284869 fastq.gz 12.2 GB
EGAF00005284870 fastq.gz 19.6 GB
EGAF00005284871 fastq.gz 4.6 GB
EGAF00005284872 fastq.gz 2.0 GB
EGAF00005284873 fastq.gz 18.1 GB
EGAF00005284876 fastq.gz 11.3 GB
EGAF00005284877 fastq.gz 5.7 GB
EGAF00005284880 fastq.gz 11.3 GB
EGAF00005284881 fastq.gz 5.8 GB
EGAF00005284882 fastq.gz 2.0 GB
EGAF00005284883 fastq.gz 12.4 GB
EGAF00005284904 fastq.gz 2.0 GB
EGAF00005284905 fastq.gz 20.7 GB
EGAF00005284906 fastq.gz 19.2 GB
EGAF00005284907 fastq.gz 5.5 GB
EGAF00005284908 fastq.gz 19.5 GB
EGAF00005284909 fastq.gz 5.5 GB
EGAF00005284910 fastq.gz 11.3 GB
EGAF00005284911 fastq.gz 5.7 GB
EGAF00005284912 fastq.gz 2.0 GB
EGAF00005284913 fastq.gz 20.6 GB
EGAF00005284933 fastq.gz 19.2 GB
EGAF00005284934 fastq.gz 5.6 GB
EGAF00005284957 fastq.gz 2.0 GB
EGAF00005284958 fastq.gz 12.3 GB
EGAF00005284959 fastq.gz 10.9 GB
EGAF00005284960 fastq.gz 5.5 GB
EGAF00005284961 fastq.gz 1.9 GB
EGAF00005284962 fastq.gz 12.0 GB
EGAF00005284965 fastq.gz 10.7 GB
EGAF00005284966 fastq.gz 5.4 GB
EGAF00005284967 fastq.gz 18.1 GB
EGAF00005284968 fastq.gz 5.1 GB
EGAF00005284977 fastq.gz 11.3 GB
EGAF00005284978 fastq.gz 5.9 GB
EGAF00005284981 fastq.gz 2.0 GB
EGAF00005284982 fastq.gz 12.5 GB
EGAF00005284991 fastq.gz 1.9 GB
EGAF00005284992 fastq.gz 12.1 GB
EGAF00005284993 fastq.gz 10.8 GB
EGAF00005284994 fastq.gz 5.5 GB
EGAF00005285019 fastq.gz 1.9 GB
EGAF00005285020 fastq.gz 11.9 GB
EGAF00005285021 fastq.gz 2.1 GB
EGAF00005285022 fastq.gz 12.4 GB
EGAF00005285023 fastq.gz 19.2 GB
EGAF00005285024 fastq.gz 5.6 GB
EGAF00005285025 fastq.gz 11.3 GB
EGAF00005285026 fastq.gz 5.8 GB
EGAF00005285029 fastq.gz 10.7 GB
EGAF00005285030 fastq.gz 5.4 GB
EGAF00005285031 fastq.gz 2.1 GB
EGAF00005285032 fastq.gz 12.4 GB
EGAF00005285041 fastq.gz 2.0 GB
EGAF00005285042 fastq.gz 20.5 GB
96 Files (860.8 GB)