Three large nuclear families in which a single child per family was diagnosed with cancer
We collected saliva samples from three nuclear families having 4, 5, and 7 children, respectively. One child in each nfamily had been diagnosed with a pediatric tumor, and neither parent had been diagnosed with cancer. Diagnoses included Wilms tumor, low-grade astrocytoma, and Burkitt’s lymphoma, respectively. We used whole-genome sequencing to profile normal cells from each family member and a linked-read technology.
- 21/05/2021
- 22 samples
- DAC: EGAC00001002130
- Technology: HiSeq X Ten
DUO:0000018 version: 2019-01-07
not for profit, non commercial use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
DUO:0000019 version: 2019-01-07
publication required
This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
DUO:0000021 version: 2019-01-07
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000042 version: 2019-01-07
general research use
This data use permission indicates that use is allowed for general research use for any research purpose.
Data access policy for downloading and analyzing the data.
This policy uses terms from the Data Use Ontology (see https://ega-archive.org/data-use-conditions): DUO:0000042 DUO:0000018 DUO:0000019 DUO:0000029 I am not quite sure how to specify the policy beyond specifying these terms. If there is an example that I could follow for formatting it, please let me know.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005321 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF00005302343 | bam | 79.9 GB |
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| EGAF00005302344 | bam | 75.3 GB |
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| EGAF00005302345 | bam | 78.9 GB |
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| EGAF00005302346 | bam | 91.5 GB |
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| EGAF00005302347 | bam | 92.5 GB |
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| EGAF00005302348 | bam | 83.0 GB |
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| EGAF00005302349 | bam | 98.5 GB |
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| EGAF00005302350 | bam | 96.3 GB |
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| EGAF00005302351 | bam | 96.6 GB |
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| EGAF00005302352 | bam | 94.9 GB |
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| EGAF00005302353 | bam | 94.9 GB |
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| EGAF00005302354 | bam | 97.4 GB |
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| EGAF00005302355 | bam | 101.4 GB |
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| EGAF00005302356 | bam | 102.6 GB |
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| EGAF00005302357 | bam | 100.5 GB |
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| EGAF00005302358 | bam | 102.8 GB |
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| EGAF00005302359 | bam | 101.6 GB |
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| EGAF00005302360 | bam | 101.7 GB |
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| EGAF00005302361 | bam | 100.1 GB |
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| EGAF00005302362 | bam | 100.4 GB |
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| EGAF00005302363 | bam | 100.4 GB |
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| EGAF00005302364 | bam | 99.0 GB |
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| 22 Files (2.1 TB) | ||||