Three large nuclear families in which a single child per family was diagnosed with cancer
We collected saliva samples from three nuclear families having 4, 5, and 7 children, respectively. One child in each nfamily had been diagnosed with a pediatric tumor, and neither parent had been diagnosed with cancer. Diagnoses included Wilms tumor, low-grade astrocytoma, and Burkitt’s lymphoma, respectively. We used whole-genome sequencing to profile normal cells from each family member and a linked-read technology.
- 22 samples
- DAC: EGAC00001002130
- Technology: HiSeq X Ten
- NPUNCU DUO:0000018 (version: 2019-01-07)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PUB DUO:0000019 (version: 2019-01-07)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- IRB DUO:0000021 (version: 2019-01-07)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
- GRU DUO:0000042 (version: 2019-01-07)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
Data access policy for downloading and analyzing the data.
This policy uses terms from the Data Use Ontology (see https://ega-archive.org/data-use-conditions): DUO:0000042 DUO:0000018 DUO:0000019 DUO:0000029 I am not quite sure how to specify the policy beyond specifying these terms. If there is an example that I could follow for formatting it, please let me know.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005321 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005302343 | bam | 79.9 GB | ||
| EGAF00005302344 | bam | 75.3 GB | ||
| EGAF00005302345 | bam | 78.9 GB | ||
| EGAF00005302346 | bam | 91.5 GB | ||
| EGAF00005302347 | bam | 92.5 GB | ||
| EGAF00005302348 | bam | 83.0 GB | ||
| EGAF00005302349 | bam | 98.5 GB | ||
| EGAF00005302350 | bam | 96.3 GB | ||
| EGAF00005302351 | bam | 96.6 GB | ||
| EGAF00005302352 | bam | 94.9 GB | ||
| EGAF00005302353 | bam | 94.9 GB | ||
| EGAF00005302354 | bam | 97.4 GB | ||
| EGAF00005302355 | bam | 101.4 GB | ||
| EGAF00005302356 | bam | 102.6 GB | ||
| EGAF00005302357 | bam | 100.5 GB | ||
| EGAF00005302358 | bam | 102.8 GB | ||
| EGAF00005302359 | bam | 101.6 GB | ||
| EGAF00005302360 | bam | 101.7 GB | ||
| EGAF00005302361 | bam | 100.1 GB | ||
| EGAF00005302362 | bam | 100.4 GB | ||
| EGAF00005302363 | bam | 100.4 GB | ||
| EGAF00005302364 | bam | 99.0 GB | ||
| 22 Files (2.1 TB) | ||||