UCL COVID-19 Single-cell PBMC

Single-cell multi-omic profiling of COVID19 patients recruited from University College London. Data represent RNA-seq, surface protein measurements (CITE-seq) of 192 antibody targets, along with VDJ-seq profiling of single T cell and B cell receptors. Samples are pooled, with 4 donors per pool. Germ-line genotypes derived from previous single-cell RNA-sequencing are provided (VCF) to aid demultiplexing of single-cell and assignment to specific patient donor samples.

09/08/2021
21 samples
DAC: EGAC00001002222
Technology: Illumina NovaSeq 6000

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Data sharing of Single-cell multi-omic profiling of human PBMCs, including adaptive immune cell receptor sequences derived from a cross-center cohort of COVID-19, &amp; respiratory disease patients, along with healthy controls recruited via University College London.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001005465	Multi-omic single-cell profiling of peripheral blood immune cells from COVID-19 patients and controls.	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00005394161	fastq.gz	3.8 GB	Report
EGAF00005394162	fastq.gz	45.6 GB	Report
EGAF00005394163	fastq.gz	46.4 GB	Report
EGAF00005394164	fastq.gz	3.9 GB	Report
EGAF00005394165	fastq.gz	44.9 GB	Report
EGAF00005394166	fastq.gz	45.4 GB	Report
EGAF00005394167	fastq.gz	3.4 GB	Report
EGAF00005394168	fastq.gz	41.4 GB	Report
EGAF00005394169	fastq.gz	42.4 GB	Report
EGAF00005394170	fastq.gz	3.4 GB	Report
EGAF00005394171	fastq.gz	39.9 GB	Report
EGAF00005394172	fastq.gz	40.8 GB	Report
EGAF00005394173	fastq.gz	3.6 GB	Report
EGAF00005394174	fastq.gz	43.1 GB	Report
EGAF00005394175	fastq.gz	44.2 GB	Report
EGAF00005394176	fastq.gz	4.1 GB	Report
EGAF00005394177	fastq.gz	49.5 GB	Report
EGAF00005394178	fastq.gz	50.7 GB	Report
EGAF00005394179	fastq.gz	3.0 GB	Report
EGAF00005394180	fastq.gz	31.8 GB	Report
EGAF00005394181	fastq.gz	32.4 GB	Report
EGAF00005394182	fastq.gz	4.3 GB	Report
EGAF00005394183	fastq.gz	52.2 GB	Report
EGAF00005394184	fastq.gz	53.3 GB	Report
EGAF00005394185	fastq.gz	2.3 GB	Report
EGAF00005394186	fastq.gz	27.7 GB	Report
EGAF00005394187	fastq.gz	28.0 GB	Report
EGAF00005394188	fastq.gz	4.3 GB	Report
EGAF00005394189	fastq.gz	50.5 GB	Report
EGAF00005394190	fastq.gz	51.6 GB	Report
EGAF00005394191	fastq.gz	1.5 GB	Report
EGAF00005394192	fastq.gz	13.4 GB	Report
EGAF00005394193	fastq.gz	13.0 GB	Report
EGAF00005394194	fastq.gz	887.5 MB	Report
EGAF00005394195	fastq.gz	7.9 GB	Report
EGAF00005394196	fastq.gz	8.1 GB	Report
EGAF00005394197	fastq.gz	10.3 GB	Report
EGAF00005394198	fastq.gz	1.1 GB	Report
EGAF00005394199	fastq.gz	10.1 GB	Report
EGAF00005394200	fastq.gz	8.4 GB	Report
EGAF00005394201	fastq.gz	8.8 GB	Report
EGAF00005394202	fastq.gz	1.2 GB	Report
EGAF00005394203	fastq.gz	10.0 GB	Report
EGAF00005394204	fastq.gz	968.5 MB	Report
EGAF00005394205	fastq.gz	8.5 GB	Report
EGAF00005394206	fastq.gz	8.8 GB	Report
EGAF00005394207	fastq.gz	901.3 MB	Report
EGAF00005394208	fastq.gz	7.3 GB	Report
EGAF00005394209	fastq.gz	7.6 GB	Report
EGAF00005394210	fastq.gz	504.1 MB	Report
EGAF00005394211	fastq.gz	392.7 MB	Report
EGAF00005394212	fastq.gz	3.9 GB	Report
EGAF00005394213	fastq.gz	5.0 GB	Report
EGAF00005394214	fastq.gz	3.9 GB	Report
EGAF00005394215	fastq.gz	512.5 MB	Report
EGAF00005394216	fastq.gz	5.1 GB	Report
EGAF00005394217	fastq.gz	723.7 MB	Report
EGAF00005394218	fastq.gz	7.5 GB	Report
EGAF00005394219	fastq.gz	3.8 GB	Report
EGAF00005394220	fastq.gz	508.8 MB	Report
EGAF00005394221	fastq.gz	5.2 GB	Report
EGAF00005394222	fastq.gz	5.2 GB	Report
EGAF00005394223	fastq.gz	589.8 MB	Report
EGAF00005394224	fastq.gz	5.9 GB	Report
EGAF00005394225	fastq.gz	5.8 GB	Report
EGAF00005394226	fastq.gz	332.6 MB	Report
EGAF00005394227	fastq.gz	3.2 GB	Report
EGAF00005394228	fastq.gz	3.3 GB	Report
EGAF00005394229	fastq.gz	312.3 MB	Report
EGAF00005394230	fastq.gz	3.0 GB	Report
EGAF00005394231	fastq.gz	3.1 GB	Report
EGAF00005394232	fastq.gz	388.3 MB	Report
EGAF00005394233	fastq.gz	3.6 GB	Report
EGAF00005394234	fastq.gz	3.9 GB	Report
EGAF00005394235	fastq.gz	632.8 MB	Report
EGAF00005394236	fastq.gz	6.1 GB	Report
EGAF00005394237	fastq.gz	6.5 GB	Report
EGAF00005394238	fastq.gz	374.6 MB	Report
EGAF00005394239	fastq.gz	3.5 GB	Report
EGAF00005394240	fastq.gz	3.7 GB	Report
EGAF00005394241	fastq.gz	377.1 MB	Report
EGAF00005394242	fastq.gz	3.6 GB	Report
EGAF00005394243	fastq.gz	3.7 GB	Report
EGAF00005394244	fastq.gz	337.1 MB	Report
EGAF00005394245	fastq.gz	3.3 GB	Report
EGAF00005394246	fastq.gz	3.3 GB	Report
EGAF00005394247	fastq.gz	470.1 MB	Report
EGAF00005394248	fastq.gz	4.9 GB	Report
EGAF00005394249	fastq.gz	5.0 GB	Report
EGAF00005394250	fastq.gz	1.5 GB	Report
EGAF00005394251	fastq.gz	13.7 GB	Report
EGAF00005394252	fastq.gz	13.2 GB	Report
EGAF00005394253	fastq.gz	1.2 GB	Report
EGAF00005394254	fastq.gz	10.5 GB	Report
EGAF00005394255	fastq.gz	9.7 GB	Report
EGAF00005394256	fastq.gz	987.6 MB	Report
EGAF00005394257	fastq.gz	909.3 MB	Report
EGAF00005394258	fastq.gz	7.7 GB	Report
EGAF00005394259	fastq.gz	8.0 GB	Report
EGAF00005394260	fastq.gz	10.5 GB	Report
EGAF00005394261	fastq.gz	492.6 MB	Report
EGAF00005394262	fastq.gz	5.1 GB	Report
EGAF00005394263	fastq.gz	5.0 GB	Report
EGAF00005394264	fastq.gz	5.2 GB	Report
EGAF00005394265	fastq.gz	5.0 GB	Report
EGAF00005394266	fastq.gz	3.9 GB	Report
EGAF00005394267	fastq.gz	500.3 MB	Report
EGAF00005394268	fastq.gz	4.9 GB	Report
EGAF00005394269	fastq.gz	385.3 MB	Report
EGAF00005394270	fastq.gz	4.0 GB	Report
EGAF00005394271	fastq.gz	3.9 GB	Report
EGAF00005394272	fastq.gz	391.1 MB	Report
EGAF00005394273	fastq.gz	3.8 GB	Report
EGAF00005394274	fastq.gz	5.0 GB	Report
EGAF00005394275	fastq.gz	7.6 GB	Report
EGAF00005394276	fastq.gz	375.4 MB	Report
EGAF00005394277	fastq.gz	3.9 GB	Report
EGAF00005394278	fastq.gz	426.7 MB	Report
EGAF00005394279	fastq.gz	4.5 GB	Report
EGAF00005394280	fastq.gz	4.4 GB	Report
EGAF00005400375	vcf	2.6 MB
EGAF00005400376	vcf	2.8 MB
EGAF00005400378	vcf	3.1 MB
EGAF00005400379	vcf	3.0 MB
EGAF00005400380	vcf	3.3 MB
EGAF00005400381	vcf	3.3 MB
EGAF00005400382	vcf	3.0 MB
EGAF00005400383	vcf	3.1 MB
EGAF00005400384	vcf	3.3 MB
EGAF00005400385	vcf	3.3 MB
EGAF00005400386	vcf	3.0 MB
EGAF00005400387	vcf	2.8 MB
EGAF00005400388	vcf	2.6 MB
EGAF00005400389	vcf	2.8 MB
EGAF00005400390	vcf	3.1 MB
EGAF00005400391	vcf	3.0 MB
EGAF00005400392	vcf	3.3 MB
EGAF00005400393	vcf	3.3 MB
EGAF00005400394	vcf	3.0 MB
EGAF00005400395	vcf	2.8 MB
EGAF00005400396	vcf	3.3 MB
EGAF00005400397	vcf	3.3 MB
142 Files (1.3 TB)

UCL COVID-19 Single-cell PBMC

Data sharing of Single-cell multi-omic profiling of human PBMCs, including adaptive immune cell receptor sequences derived from a cross-center cohort of COVID-19, &amp;amp; respiratory disease patients, along with healthy controls recruited via University College London.

Data sharing of Single-cell multi-omic profiling of human PBMCs, including adaptive immune cell receptor sequences derived from a cross-center cohort of COVID-19, & respiratory disease patients, along with healthy controls recruited via University College London.