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Whole-exome/genome sequencing of childhood acute leukemia in Iraq

This dataset contains 26 whole-genome sequencing (13 paired tumor and normal), 106 whole-exome sequencing (53 paired tumor and normal), and 43 targeted sequencing data. Sequencing was performed using an Illumina platform. The data are BAM files aligned to the hg19 reference genome.

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Controlled access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom NAGOYA UNIVERSITY HOSPITAL grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NAGOYA UNIVERSITY HOSPITAL and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines ( ) and the Toronto Statement ( This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) ( ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) ( ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NAGOYA UNIVERSITY HOSPITAL within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NAGOYA UNIVERSITY HOSPITAL prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NAGOYA UNIVERSITY HOSPITAL as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NAGOYA UNIVERSITY HOSPITAL may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NAGOYA UNIVERSITY HOSPITAL. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005470 Other
ID File Type Size Located in
EGAF00005398027 bam 5.0 GB
EGAF00005398028 bam 3.5 GB
EGAF00005398029 bam 4.4 GB
EGAF00005398030 bam 4.2 GB
EGAF00005398031 bam 5.7 GB
EGAF00005398032 bam 4.5 GB
EGAF00005398033 bam 4.9 GB
EGAF00005398034 bam 1.3 GB
EGAF00005398035 bam 3.4 GB
EGAF00005398036 bam 5.4 GB
EGAF00005398037 bam 5.2 GB
EGAF00005398038 bam 5.2 GB
EGAF00005398039 bam 40.5 GB
EGAF00005398040 bam 5.8 GB
EGAF00005398041 bam 5.1 GB
EGAF00005398042 bam 5.2 GB
EGAF00005398043 bam 1.1 GB
EGAF00005398044 bam 53.0 GB
EGAF00005398045 bam 1.1 GB
EGAF00005398046 bam 1.2 GB
EGAF00005398047 bam 35.6 GB
EGAF00005398048 bam 1.3 GB
EGAF00005398049 bam 1.2 GB
EGAF00005398050 bam 1.4 GB
EGAF00005398051 bam 38.7 GB
EGAF00005398052 bam 40.0 GB
EGAF00005398053 bam 39.7 GB
EGAF00005398054 bam 37.1 GB
EGAF00005398055 bam 5.6 GB
EGAF00005398056 bam 4.3 GB
EGAF00005398057 bam 4.5 GB
EGAF00005398058 bam 4.0 GB
EGAF00005398059 bam 5.1 GB
EGAF00005398060 bam 6.2 GB
EGAF00005398061 bam 5.4 GB
EGAF00005398062 bam 4.3 GB
EGAF00005398063 bam 3.2 GB
EGAF00005398064 bam 3.2 GB
EGAF00005398065 bam 3.3 GB
EGAF00005398066 bam 4.6 GB
EGAF00005398067 bam 36.3 GB
EGAF00005398068 bam 3.8 GB
EGAF00005398069 bam 3.1 GB
EGAF00005398070 bam 5.9 GB
EGAF00005398071 bam 39.3 GB
EGAF00005398072 bam 4.1 GB
EGAF00005398073 bam 4.7 GB
EGAF00005398074 bam 5.6 GB
EGAF00005398075 bam 67.8 GB
EGAF00005398076 bam 7.0 GB
EGAF00005398077 bam 4.7 GB
EGAF00005398078 bam 5.5 GB
EGAF00005398079 bam 4.1 GB
EGAF00005398080 bam 1.3 GB
EGAF00005398081 bam 3.8 GB
EGAF00005398082 bam 4.8 GB
EGAF00005398083 bam 1.2 GB
EGAF00005398084 bam 6.0 GB
EGAF00005398085 bam 5.8 GB
EGAF00005398086 bam 35.9 GB
EGAF00005398087 bam 54.4 GB
EGAF00005398088 bam 3.4 GB
EGAF00005398089 bam 3.9 GB
EGAF00005398090 bam 3.8 GB
EGAF00005398091 bam 4.1 GB
EGAF00005398092 bam 4.0 GB
EGAF00005398093 bam 1.4 GB
EGAF00005398094 bam 2.8 GB
EGAF00005398095 bam 1.4 GB
EGAF00005398096 bam 39.6 GB
EGAF00005398097 bam 5.3 GB
EGAF00005398098 bam 4.5 GB
EGAF00005398099 bam 4.9 GB
EGAF00005398100 bam 5.9 GB
EGAF00005398101 bam 1.3 GB
EGAF00005398102 bam 4.9 GB
EGAF00005398103 bam 5.4 GB
EGAF00005398104 bam 4.0 GB
EGAF00005398105 bam 4.5 GB
EGAF00005398106 bam 1.0 GB
EGAF00005398107 bam 5.4 GB
EGAF00005398108 bam 4.3 GB
EGAF00005398109 bam 1.1 GB
EGAF00005398110 bam 1.0 GB
EGAF00005398111 bam 37.1 GB
EGAF00005398112 bam 4.2 GB
EGAF00005398113 bam 39.3 GB
EGAF00005398114 bam 4.4 GB
EGAF00005398115 bam 5.2 GB
EGAF00005398116 bam 40.8 GB
EGAF00005398117 bam 36.2 GB
EGAF00005398118 bam 3.6 GB
EGAF00005398119 bam 1.4 GB
EGAF00005398120 bam 5.2 GB
EGAF00005398121 bam 1.4 GB
EGAF00005398122 bam 5.6 GB
EGAF00005398123 bam 1.6 GB
EGAF00005398124 bam 6.1 GB
EGAF00005398125 bam 4.8 GB
EGAF00005398126 bam 6.0 GB
EGAF00005398127 bam 3.1 GB
EGAF00005398128 bam 4.8 GB
EGAF00005398129 bam 41.9 GB
EGAF00005398130 bam 5.1 GB
EGAF00005398131 bam 5.7 GB
EGAF00005398132 bam 3.7 GB
EGAF00005398133 bam 41.8 GB
EGAF00005398134 bam 4.2 GB
EGAF00005398135 bam 5.3 GB
EGAF00005398136 bam 1.3 GB
EGAF00005398137 bam 1.2 GB
EGAF00005398138 bam 1.0 GB
EGAF00005398139 bam 5.6 GB
EGAF00005398140 bam 1.1 GB
EGAF00005398141 bam 5.2 GB
EGAF00005398142 bam 5.1 GB
EGAF00005398143 bam 1.1 GB
EGAF00005398144 bam 1.1 GB
EGAF00005398145 bam 4.4 GB
EGAF00005398146 bam 1.4 GB
EGAF00005398147 bam 1.2 GB
EGAF00005398148 bam 4.7 GB
EGAF00005398149 bam 1.1 GB
EGAF00005398150 bam 1.1 GB
EGAF00005398151 bam 4.8 GB
EGAF00005398152 bam 1.4 GB
EGAF00005398153 bam 1.2 GB
EGAF00005398154 bam 1.1 GB
EGAF00005398155 bam 4.5 GB
EGAF00005398156 bam 1.5 GB
EGAF00005398157 bam 4.4 GB
EGAF00005398158 bam 3.8 GB
EGAF00005398159 bam 5.4 GB
EGAF00005398160 bam 6.2 GB
EGAF00005398161 bam 4.9 GB
EGAF00005398162 bam 5.2 GB
EGAF00005398163 bam 3.1 GB
EGAF00005398164 bam 4.0 GB
EGAF00005398165 bam 5.1 GB
EGAF00005398166 bam 2.9 GB
EGAF00005398167 bam 4.4 GB
EGAF00005398168 bam 5.2 GB
EGAF00005398169 bam 3.5 GB
EGAF00005398170 bam 1.1 GB
EGAF00005398171 bam 997.0 MB
EGAF00005398172 bam 1.3 GB
EGAF00005398173 bam 51.1 GB
EGAF00005398174 bam 1.5 GB
EGAF00005398175 bam 4.7 GB
EGAF00005398176 bam 6.3 GB
EGAF00005398177 bam 5.9 GB
EGAF00005398178 bam 34.9 GB
EGAF00005398179 bam 1.4 GB
EGAF00005398180 bam 57.4 GB
EGAF00005398181 bam 1.2 GB
EGAF00005398182 bam 1.3 GB
EGAF00005398183 bam 1.1 GB
EGAF00005398184 bam 1.3 GB
EGAF00005398185 bam 90.0 GB
EGAF00005398186 bam 6.7 GB
EGAF00005398187 bam 4.1 GB
EGAF00005398188 bam 5.2 GB
EGAF00005398189 bam 4.2 GB
EGAF00005398190 bam 1.2 GB
EGAF00005398191 bam 5.0 GB
EGAF00005398192 bam 1.2 GB
EGAF00005398193 bam 5.9 GB
EGAF00005398194 bam 5.5 GB
EGAF00005398195 bam 3.4 GB
EGAF00005398196 bam 35.8 GB
EGAF00005398197 bam 5.9 GB
EGAF00005398198 bam 50.5 GB
EGAF00005398199 bam 4.5 GB
EGAF00005398200 bam 33.8 GB
EGAF00005398201 bam 6.1 GB
175 Files (1.7 TB)