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Single-cell RNA-seq of matched primary GBM tumours, patient-derived organoids, and gliomasphere lines

Single-cell RNA-seq of primary GBM tumours and matched patient-derived organoids and gliomasphere lines. Obtained using the 10X Genomics single-cell 3' expression solution (v2 chemistry). Primary samples and PDOs from 12 tumours from 10 patients (10 primary, two recurrent), and gliomasphere lines from a subset of five tumours. Samples were obtained from two spatially distinct regions of each tumour.

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BCCA (BCGSC) data policy

This document refers to the data set which has been submitted to the European Genome Archive (EGA) for the controlled access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the British Columbia Cancer Agency Branch herein represented by the Technology Development Office of the Provincial Health Services Authority. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by the Technology Development Office - contact our general email address TDOadmin@phsa.ca

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005227 Other
ID File Type Size Located in
EGAF00005403704 fastq.gz 2.1 GB
EGAF00005403705 fastq.gz 2.8 GB
EGAF00005403706 fastq.gz 2.4 GB
EGAF00005403707 fastq.gz 3.3 GB
EGAF00005403708 fastq.gz 2.4 GB
EGAF00005403709 fastq.gz 3.3 GB
EGAF00005403710 fastq.gz 2.6 GB
EGAF00005403711 fastq.gz 3.5 GB
EGAF00005403712 fastq.gz 2.2 GB
EGAF00005403713 fastq.gz 2.9 GB
EGAF00005403714 fastq.gz 2.5 GB
EGAF00005403715 fastq.gz 3.4 GB
EGAF00005403716 fastq.gz 3.1 GB
EGAF00005403717 fastq.gz 4.3 GB
EGAF00005403718 fastq.gz 3.0 GB
EGAF00005403719 fastq.gz 4.2 GB
EGAF00005403720 fastq.gz 3.5 GB
EGAF00005403721 fastq.gz 4.9 GB
EGAF00005403722 fastq.gz 3.3 GB
EGAF00005403723 fastq.gz 4.7 GB
EGAF00005403724 fastq.gz 2.9 GB
EGAF00005403725 fastq.gz 4.0 GB
EGAF00005403726 fastq.gz 2.9 GB
EGAF00005403727 fastq.gz 4.0 GB
EGAF00005403728 fastq.gz 2.8 GB
EGAF00005403729 fastq.gz 4.0 GB
EGAF00005403730 fastq.gz 3.1 GB
EGAF00005403731 fastq.gz 4.4 GB
EGAF00005403732 fastq.gz 3.3 GB
EGAF00005403733 fastq.gz 4.6 GB
EGAF00005403734 fastq.gz 3.3 GB
EGAF00005403735 fastq.gz 4.7 GB
EGAF00005403736 fastq.gz 2.7 GB
EGAF00005403737 fastq.gz 3.7 GB
EGAF00005403738 fastq.gz 3.3 GB
EGAF00005403739 fastq.gz 4.6 GB
EGAF00005403740 fastq.gz 3.2 GB
EGAF00005403741 fastq.gz 4.5 GB
EGAF00005403742 fastq.gz 3.1 GB
EGAF00005403743 fastq.gz 4.4 GB
EGAF00005403744 fastq.gz 3.0 GB
EGAF00005403745 fastq.gz 4.1 GB
EGAF00005403746 fastq.gz 3.1 GB
EGAF00005403747 fastq.gz 4.3 GB
EGAF00005403748 fastq.gz 3.1 GB
EGAF00005403749 fastq.gz 4.3 GB
EGAF00005403750 fastq.gz 2.9 GB
EGAF00005403751 fastq.gz 4.1 GB
EGAF00005403752 fastq.gz 2.9 GB
EGAF00005403753 fastq.gz 4.1 GB
EGAF00005403754 fastq.gz 3.0 GB
EGAF00005403755 fastq.gz 4.3 GB
EGAF00005403756 fastq.gz 2.7 GB
EGAF00005403757 fastq.gz 3.7 GB
EGAF00005403758 fastq.gz 3.0 GB
EGAF00005403759 fastq.gz 4.1 GB
EGAF00005403760 fastq.gz 2.9 GB
EGAF00005403761 fastq.gz 4.1 GB
EGAF00005403762 fastq.gz 3.0 GB
EGAF00005403763 fastq.gz 4.2 GB
EGAF00005403764 fastq.gz 2.8 GB
EGAF00005403765 fastq.gz 3.9 GB
EGAF00005403766 fastq.gz 3.1 GB
EGAF00005403767 fastq.gz 4.4 GB
EGAF00005403768 fastq.gz 3.1 GB
EGAF00005403769 fastq.gz 4.4 GB
EGAF00005403770 fastq.gz 2.9 GB
EGAF00005403771 fastq.gz 4.0 GB
EGAF00005403772 fastq.gz 3.3 GB
EGAF00005403773 fastq.gz 4.6 GB
EGAF00005403774 fastq.gz 3.2 GB
EGAF00005403775 fastq.gz 4.5 GB
EGAF00005403776 fastq.gz 3.3 GB
EGAF00005403777 fastq.gz 4.6 GB
EGAF00005403778 fastq.gz 2.2 GB
EGAF00005403779 fastq.gz 3.1 GB
EGAF00005403780 fastq.gz 2.3 GB
EGAF00005403781 fastq.gz 3.3 GB
EGAF00005403782 fastq.gz 2.4 GB
EGAF00005403783 fastq.gz 3.4 GB
EGAF00005403784 fastq.gz 2.4 GB
EGAF00005403785 fastq.gz 3.3 GB
EGAF00005403786 fastq.gz 2.2 GB
EGAF00005403787 fastq.gz 3.1 GB
EGAF00005403788 fastq.gz 2.4 GB
EGAF00005403789 fastq.gz 3.4 GB
EGAF00005403790 fastq.gz 2.5 GB
EGAF00005403791 fastq.gz 3.4 GB
EGAF00005403792 fastq.gz 2.6 GB
EGAF00005403793 fastq.gz 3.7 GB
EGAF00005403794 fastq.gz 2.6 GB
EGAF00005403795 fastq.gz 3.6 GB
EGAF00005403796 fastq.gz 2.6 GB
EGAF00005403797 fastq.gz 3.6 GB
EGAF00005403798 fastq.gz 2.5 GB
EGAF00005403799 fastq.gz 3.5 GB
EGAF00005403800 fastq.gz 2.4 GB
EGAF00005403801 fastq.gz 3.4 GB
EGAF00005403802 fastq.gz 2.7 GB
EGAF00005403803 fastq.gz 3.7 GB
EGAF00005403804 fastq.gz 2.5 GB
EGAF00005403805 fastq.gz 3.4 GB
EGAF00005403806 fastq.gz 2.6 GB
EGAF00005403807 fastq.gz 3.5 GB
EGAF00005403808 fastq.gz 2.6 GB
EGAF00005403809 fastq.gz 3.6 GB
EGAF00005403810 fastq.gz 2.5 GB
EGAF00005403811 fastq.gz 3.6 GB
EGAF00005403812 fastq.gz 2.3 GB
EGAF00005403813 fastq.gz 3.4 GB
EGAF00005403814 fastq.gz 2.6 GB
EGAF00005403815 fastq.gz 3.7 GB
EGAF00005403816 fastq.gz 2.6 GB
EGAF00005403817 fastq.gz 3.8 GB
EGAF00005403818 fastq.gz 2.7 GB
EGAF00005403819 fastq.gz 3.9 GB
EGAF00005403820 fastq.gz 2.3 GB
EGAF00005403821 fastq.gz 3.4 GB
EGAF00005403822 fastq.gz 2.6 GB
EGAF00005403823 fastq.gz 3.8 GB
EGAF00005403824 fastq.gz 2.8 GB
EGAF00005403825 fastq.gz 4.1 GB
EGAF00005403826 fastq.gz 2.6 GB
EGAF00005403827 fastq.gz 3.6 GB
EGAF00005403828 fastq.gz 2.5 GB
EGAF00005403829 fastq.gz 3.5 GB
EGAF00005403830 fastq.gz 2.6 GB
EGAF00005403831 fastq.gz 3.6 GB
EGAF00005403832 fastq.gz 2.8 GB
EGAF00005403833 fastq.gz 3.9 GB
EGAF00005403834 fastq.gz 2.6 GB
EGAF00005403835 fastq.gz 3.7 GB
EGAF00005403836 fastq.gz 2.8 GB
EGAF00005403837 fastq.gz 3.8 GB
EGAF00005403838 fastq.gz 2.8 GB
EGAF00005403839 fastq.gz 3.9 GB
EGAF00005403840 fastq.gz 2.9 GB
EGAF00005403841 fastq.gz 4.0 GB
EGAF00005403842 fastq.gz 2.8 GB
EGAF00005403843 fastq.gz 4.1 GB
EGAF00005403844 fastq.gz 3.1 GB
EGAF00005403845 fastq.gz 4.4 GB
EGAF00005403846 fastq.gz 2.8 GB
EGAF00005403847 fastq.gz 4.0 GB
EGAF00005403848 fastq.gz 2.8 GB
EGAF00005403849 fastq.gz 4.0 GB
EGAF00005403850 fastq.gz 3.0 GB
EGAF00005403851 fastq.gz 4.3 GB
EGAF00005403852 fastq.gz 2.8 GB
EGAF00005403853 fastq.gz 4.0 GB
EGAF00005403854 fastq.gz 3.3 GB
EGAF00005403855 fastq.gz 4.8 GB
EGAF00005403856 fastq.gz 2.9 GB
EGAF00005403857 fastq.gz 3.9 GB
EGAF00005403858 fastq.gz 2.8 GB
EGAF00005403859 fastq.gz 3.7 GB
EGAF00005403860 fastq.gz 2.6 GB
EGAF00005403861 fastq.gz 3.5 GB
EGAF00005403862 fastq.gz 2.9 GB
EGAF00005403863 fastq.gz 3.7 GB
EGAF00005403864 fastq.gz 2.9 GB
EGAF00005403865 fastq.gz 3.9 GB
EGAF00005403866 fastq.gz 2.9 GB
EGAF00005403867 fastq.gz 3.8 GB
EGAF00005403868 fastq.gz 2.9 GB
EGAF00005403869 fastq.gz 3.8 GB
EGAF00005403870 fastq.gz 2.8 GB
EGAF00005403871 fastq.gz 3.7 GB
EGAF00005403872 fastq.gz 2.7 GB
EGAF00005403873 fastq.gz 3.8 GB
EGAF00005403874 fastq.gz 2.8 GB
EGAF00005403875 fastq.gz 3.9 GB
EGAF00005403876 fastq.gz 2.8 GB
EGAF00005403877 fastq.gz 4.0 GB
EGAF00005403878 fastq.gz 2.7 GB
EGAF00005403879 fastq.gz 3.8 GB
EGAF00005403880 fastq.gz 2.7 GB
EGAF00005403881 fastq.gz 3.8 GB
EGAF00005403882 fastq.gz 2.6 GB
EGAF00005403883 fastq.gz 3.7 GB
EGAF00005403884 fastq.gz 2.6 GB
EGAF00005403885 fastq.gz 3.6 GB
EGAF00005403886 fastq.gz 2.6 GB
EGAF00005403887 fastq.gz 3.6 GB
EGAF00005403888 fastq.gz 3.5 GB
EGAF00005403889 fastq.gz 4.9 GB
EGAF00005403890 fastq.gz 2.9 GB
EGAF00005403891 fastq.gz 4.1 GB
EGAF00005403892 fastq.gz 3.3 GB
EGAF00005403893 fastq.gz 4.6 GB
EGAF00005403894 fastq.gz 3.6 GB
EGAF00005403895 fastq.gz 5.0 GB
EGAF00005403896 fastq.gz 3.5 GB
EGAF00005403897 fastq.gz 4.9 GB
EGAF00005403898 fastq.gz 3.6 GB
EGAF00005403899 fastq.gz 4.9 GB
EGAF00005403900 fastq.gz 3.9 GB
EGAF00005403901 fastq.gz 5.5 GB
198 Files (669.8 GB)