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OxyTarget mtDNA seq

We studied 44 rectal cancer patients enrolled onto a prospective population-based biomarker study, who were planned for curative-intent radiation therapy before definitive surgery, yet at high risk of metastatic progression beyond the pelvic cavity. The patients had full-length mtDNA sequencing of whole blood (WB) and peripheral blood mononuclear cells (PBMC), sampled at the time of diagnosis. Metastatic events were recorded up to 60 months of follow-up after completion of the multimodal treatment.

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European standardization framework for data integration and data-driven in silico models for personalized medicine – EU-STANDS4PM

Access to data will be in concordance with the European standardization framework for data integration and data-driven in silico models for personalized medicine – EU-STANDS4PM (https://www.eu-stands4pm.eu/home). 1. The Data Recipient agree to only use the Data for the Purpose of the Project. 2. The Data Recipient agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. The Data Recipient undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. The Data Recipient agree not to attempt to identify Data Subjects. 4. The Data Recipient and its Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. The Data Recipient agree that in handling this Data they will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. The Data Recipient acknowledge that Access to the Data is granted for the duration of the Project, as well as any new Project under the same research field or area. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. The Data Recipient recognize that nothing in this Agreement shall operate to transfer to the Data Recipient any intellectual property rights to the Data. 8. The Data Recipient agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. The Data Recipient can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, the Data Recipient agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 10. The Data Recipient agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. The Data Recipient agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. The Data Recipient agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. You also agree that by publishing Your global analyses of the Data, you will not disclose any results generated from the Data. 13. The Data Recipient agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. The Data Recipient agree to use the Data in its laboratory. Any Authorised Personnel shall work under the direct supervision of the the Data Recipient. The Data Recipient agree to distribute a copy of these terms to the Authorised Personnel. 15. The Data Recipient may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. The Data Recipient may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should the Data Recipient wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. The Data Recipient shall ensure that ‘all’ who have Access to the Data, namely the Data Recipient and its Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. The Data Recipient remain solely and fully responsible for its Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by The Data Recipient and its Authorised Personnel, which leads to disclosure of Data, then the Data Recipient must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of hDAA by The Data Recipient it will further be required to destroy any Data held. 21. The Data Recipient accept that this Agreement will terminate immediately upon ‘any’ breach byt Data Recipient, or its termination (see Section I). 22. The Data Recipient endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 23. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. 24. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of England and Wales, and shall be subject to the exclusive jurisdiction of the English Courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005540 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005432975 bam 54.2 MB
EGAF00005432976 bam 121.1 MB
EGAF00005432977 bam 37.7 MB
EGAF00005432978 bam 667.2 MB
EGAF00005432979 bam 111.3 MB
EGAF00005432980 bam 103.9 MB
EGAF00005432981 bam 123.9 MB
EGAF00005432982 bam 404.7 MB
EGAF00005432983 bam 583.1 MB
EGAF00005432984 bam 119.9 MB
EGAF00005432985 bam 31.8 MB
EGAF00005432986 bam 506.3 MB
EGAF00005432987 bam 223.8 MB
EGAF00005432988 bam 115.7 MB
EGAF00005432989 bam 124.8 MB
EGAF00005432990 bam 495.2 MB
EGAF00005432991 bam 33.4 MB
EGAF00005432992 bam 499.5 MB
EGAF00005432993 bam 401.7 MB
EGAF00005432994 bam 115.7 MB
EGAF00005432995 bam 62.1 MB
EGAF00005432996 bam 88.6 MB
EGAF00005432997 bam 249.8 MB
EGAF00005432998 bam 57.1 MB
EGAF00005432999 bam 215.6 MB
EGAF00005433000 bam 355.7 MB
EGAF00005433001 bam 514.0 MB
EGAF00005433002 bam 884.3 MB
EGAF00005433003 bam 106.2 MB
EGAF00005433004 bam 685.5 MB
EGAF00005433005 bam 388.3 MB
EGAF00005433006 bam 217.9 MB
EGAF00005433007 bam 64.2 MB
EGAF00005433008 bam 37.7 MB
EGAF00005433009 bam 116.1 MB
EGAF00005433010 bam 116.8 MB
EGAF00005433011 bam 107.9 MB
EGAF00005433012 bam 103.3 MB
EGAF00005433013 bam 38.5 MB
EGAF00005433014 bam 169.8 MB
EGAF00005433015 bam 29.2 MB
EGAF00005433016 bam 115.9 MB
EGAF00005433017 bam 365.2 MB
EGAF00005433018 bam 390.0 MB
EGAF00005433019 bam 421.9 MB
EGAF00005433020 bam 380.1 MB
EGAF00005433021 bam 533.0 MB
EGAF00005433022 bam 533.7 MB
EGAF00005433023 bam 469.1 MB
EGAF00005433024 bam 115.1 MB
EGAF00005433025 bam 112.9 MB
EGAF00005433026 bam 422.1 MB
EGAF00005433027 bam 387.2 MB
EGAF00005433028 bam 512.6 MB
EGAF00005433029 bam 155.5 MB
EGAF00005433030 bam 113.8 MB
EGAF00005433031 bam 32.2 MB
EGAF00005433032 bam 48.3 MB
EGAF00005433033 bam 136.6 MB
EGAF00005433034 bam 117.2 MB
EGAF00005433035 bam 99.0 MB
EGAF00005433036 bam 168.2 MB
EGAF00005433037 bam 116.0 MB
EGAF00005433038 bam 140.6 MB
EGAF00005433039 bam 163.0 MB
EGAF00005433040 bam 97.5 MB
66 Files (15.6 GB)