Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8, with 3 or 6 sections from each)

Spatial transcriptome sequence data from HER2-positive human breast tumors obtained from the first generation of Spatial Transcriptomics arrays. The dataset contains 8 different tumors with 3 or 6 sections taken from each with paired-end sequencing.

36 samples
DAC: EGAC00001002288
Technology: NextSeq 550

Access Policy1 Study Files

Metadata

Request Access

DS DUO:0000007 (version: 2019-01-07)disease specific researchThis data use permission indicates that use is allowed provided it is related to the specified disease.ModifiersMONDO:0007254
IRB DUO:0000021 (version: 2019-01-07)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.

Policy for data accessibility of the raw data in the study

Data Use Limitations: (including applicable Data Use Ontology terms) • Use of the Data is limited to research on breast cancer (Mondo Disease Ontology: MONDO:0007254) for health/medical/biomedical purposes (DS, DUO:0000007). • Data Recipient must provide documentation of approval by a local Ethical Review Board or equivalent (IRB, DUO:0000021). • Use of the Data is limited to not-for-profit organizations and not-for-profit use, non-commercial use (NPUNCU, DUO:0000018). • The Data must only be used for purposes within the limits dictated by the informed consent of the Data Subjects. • The Data must not be used to identify germline variants associated with a high risk of developing cancer (e.g. variants in BRCA1, BRCA2, TP53 and similar). • Data Recipient is expected to report to Provider any Incidental Findings that could potentially affect the health of a Data Subject, living relatives of the Data Subject, or their offspring. This includes information that reveal likely life-threatening conditions, a significant risk of likely life-threatening conditions, grave conditions that can be avoided or ameliorated, a significant risk of grave conditions that can be avoided or ameliorated and genetic information that can be used in reproductive decision-making to avoid significant risk for offspring of a condition likely to be life-threatening or grave or to ameliorate a condition likely to be life-threatening or grave. Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001005577	Spatial Deconvolution of HER2-positive Breast Tumors	Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00005446978	fastq.gz	2.9 GB
EGAF00005446979	fastq.gz	4.0 GB
EGAF00005446980	fastq.gz	4.3 GB
EGAF00005446981	fastq.gz	5.8 GB
EGAF00005446982	fastq.gz	3.4 GB
EGAF00005446983	fastq.gz	4.7 GB
EGAF00005446984	fastq.gz	1.6 GB
EGAF00005446985	fastq.gz	2.2 GB
EGAF00005446986	fastq.gz	2.6 GB
EGAF00005446987	fastq.gz	3.9 GB
EGAF00005446988	fastq.gz	2.4 GB
EGAF00005446989	fastq.gz	3.5 GB
EGAF00005446990	fastq.gz	3.4 GB
EGAF00005446991	fastq.gz	5.3 GB
EGAF00005446992	fastq.gz	1.7 GB
EGAF00005446993	fastq.gz	2.5 GB
EGAF00005446994	fastq.gz	2.7 GB
EGAF00005446995	fastq.gz	3.9 GB
EGAF00005446996	fastq.gz	2.2 GB
EGAF00005446997	fastq.gz	3.3 GB
EGAF00005446998	fastq.gz	2.1 GB
EGAF00005446999	fastq.gz	3.3 GB
EGAF00005447000	fastq.gz	3.1 GB
EGAF00005447001	fastq.gz	4.1 GB
EGAF00005447002	fastq.gz	2.3 GB
EGAF00005447003	fastq.gz	3.4 GB
EGAF00005447004	fastq.gz	2.6 GB
EGAF00005447005	fastq.gz	3.7 GB
EGAF00005447006	fastq.gz	2.5 GB
EGAF00005447007	fastq.gz	3.7 GB
EGAF00005447008	fastq.gz	1.8 GB
EGAF00005447009	fastq.gz	2.7 GB
EGAF00005447010	fastq.gz	2.9 GB
EGAF00005447011	fastq.gz	3.8 GB
EGAF00005447012	fastq.gz	2.6 GB
EGAF00005447013	fastq.gz	3.6 GB
EGAF00005447014	fastq.gz	2.1 GB
EGAF00005447015	fastq.gz	3.1 GB
EGAF00005447016	fastq.gz	2.9 GB
EGAF00005447017	fastq.gz	3.9 GB
EGAF00005447018	fastq.gz	3.4 GB
EGAF00005447019	fastq.gz	4.8 GB
EGAF00005447020	fastq.gz	2.9 GB
EGAF00005447021	fastq.gz	4.4 GB
EGAF00005447022	fastq.gz	2.3 GB
EGAF00005447023	fastq.gz	3.4 GB
EGAF00005447024	fastq.gz	3.2 GB
EGAF00005447025	fastq.gz	4.8 GB
EGAF00005447026	fastq.gz	2.0 GB
EGAF00005447027	fastq.gz	3.0 GB
EGAF00005447028	fastq.gz	2.4 GB
EGAF00005447029	fastq.gz	3.3 GB
EGAF00005447030	fastq.gz	2.6 GB
EGAF00005447031	fastq.gz	3.7 GB
EGAF00005447032	fastq.gz	2.4 GB
EGAF00005447033	fastq.gz	3.5 GB
EGAF00005447034	fastq.gz	2.0 GB
EGAF00005447035	fastq.gz	3.0 GB
EGAF00005447036	fastq.gz	2.7 GB
EGAF00005447037	fastq.gz	3.8 GB
EGAF00005447038	fastq.gz	2.9 GB
EGAF00005447039	fastq.gz	4.0 GB
EGAF00005447040	fastq.gz	2.5 GB
EGAF00005447041	fastq.gz	3.9 GB
EGAF00005447042	fastq.gz	2.5 GB
EGAF00005447043	fastq.gz	3.7 GB
EGAF00005447044	fastq.gz	3.2 GB
EGAF00005447045	fastq.gz	4.5 GB
EGAF00005447046	fastq.gz	2.8 GB
EGAF00005447047	fastq.gz	4.4 GB
EGAF00005447048	fastq.gz	3.3 GB
EGAF00005447049	fastq.gz	4.3 GB
72 Files (232.6 GB)