Spatial transcriptome sequence data from HER2-positive human breast tumors obtained from the first generation of Spatial Transcriptomics arrays. The dataset contains 8 different tumors with 3 or 6 sections taken from each with paired-end sequencing.

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Dataset

Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8, with 3 or 6 sections from each)

Dataset ID	Technology	Samples
EGAD00001008031	NextSeq 550	36

Dataset Description

Spatial transcriptome sequence data from HER2-positive human breast tumors obtained from the first generation of Spatial Transcriptomics arrays.

The dataset contains 8 different tumors with 3 or 6 sections taken from each with paired-end sequencing.

Data Use Conditions

IRB IS DS

See further information on Data Use Conditions

Label	Code	Version	Modifier
ethics approval required	DUO:0000021	2019-01-07
institution specific restriction	DUO:0000028	2019-01-07
disease specific research	DUO:0000007	2019-01-07	MONDO:0007254

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DAC of HER2 study
Contact person: Åke Borg
Email: ake [dot] borg [at] med [dot] lu [dot] se
More details: EGAC00001002288

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This dataset is featured in 1 study

Studies are experimental investigations of a particular phenomenon. e.g. case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients. Click on one of the Study IDs below to find out more.

Study ID	Study Title	Study Type
EGAS00001005577	Spatial Deconvolution of HER2-positive Breast Tumors	Transcriptome Analysis

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