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Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8, with 3 or 6 sections from each)

Spatial transcriptome sequence data from HER2-positive human breast tumors obtained from the first generation of Spatial Transcriptomics arrays. The dataset contains 8 different tumors with 3 or 6 sections taken from each with paired-end sequencing.

Request Access

DUO:0000007
version: 2019-01-07

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0007254

DUO:0000021
version: 2019-01-07

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Policy for data accessibility of the raw data in the study

Data Use Limitations: (including applicable Data Use Ontology terms) • Use of the Data is limited to research on breast cancer (Mondo Disease Ontology: MONDO:0007254) for health/medical/biomedical purposes (DS, DUO:0000007). • Data Recipient must provide documentation of approval by a local Ethical Review Board or equivalent (IRB, DUO:0000021). • Use of the Data is limited to not-for-profit organizations and not-for-profit use, non-commercial use (NPUNCU, DUO:0000018). • The Data must only be used for purposes within the limits dictated by the informed consent of the Data Subjects. • The Data must not be used to identify germline variants associated with a high risk of developing cancer (e.g. variants in BRCA1, BRCA2, TP53 and similar). • Data Recipient is expected to report to Provider any Incidental Findings that could potentially affect the health of a Data Subject, living relatives of the Data Subject, or their offspring. This includes information that reveal likely life-threatening conditions, a significant risk of likely life-threatening conditions, grave conditions that can be avoided or ameliorated, a significant risk of grave conditions that can be avoided or ameliorated and genetic information that can be used in reproductive decision-making to avoid significant risk for offspring of a condition likely to be life-threatening or grave or to ameliorate a condition likely to be life-threatening or grave. Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005577 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005446978 fastq.gz 2.9 GB Report
EGAF00005446979 fastq.gz 4.0 GB Report
EGAF00005446980 fastq.gz 4.3 GB Report
EGAF00005446981 fastq.gz 5.8 GB Report
EGAF00005446982 fastq.gz 3.4 GB Report
EGAF00005446983 fastq.gz 4.7 GB Report
EGAF00005446984 fastq.gz 1.6 GB Report
EGAF00005446985 fastq.gz 2.2 GB Report
EGAF00005446986 fastq.gz 2.6 GB Report
EGAF00005446987 fastq.gz 3.9 GB Report
EGAF00005446988 fastq.gz 2.4 GB Report
EGAF00005446989 fastq.gz 3.5 GB Report
EGAF00005446990 fastq.gz 3.4 GB Report
EGAF00005446991 fastq.gz 5.3 GB Report
EGAF00005446992 fastq.gz 1.7 GB Report
EGAF00005446993 fastq.gz 2.5 GB Report
EGAF00005446994 fastq.gz 2.7 GB Report
EGAF00005446995 fastq.gz 3.9 GB Report
EGAF00005446996 fastq.gz 2.2 GB Report
EGAF00005446997 fastq.gz 3.3 GB Report
EGAF00005446998 fastq.gz 2.1 GB Report
EGAF00005446999 fastq.gz 3.3 GB Report
EGAF00005447000 fastq.gz 3.1 GB Report
EGAF00005447001 fastq.gz 4.1 GB Report
EGAF00005447002 fastq.gz 2.3 GB Report
EGAF00005447003 fastq.gz 3.4 GB Report
EGAF00005447004 fastq.gz 2.6 GB Report
EGAF00005447005 fastq.gz 3.7 GB Report
EGAF00005447006 fastq.gz 2.5 GB Report
EGAF00005447007 fastq.gz 3.7 GB Report
EGAF00005447008 fastq.gz 1.8 GB Report
EGAF00005447009 fastq.gz 2.7 GB Report
EGAF00005447010 fastq.gz 2.9 GB Report
EGAF00005447011 fastq.gz 3.8 GB Report
EGAF00005447012 fastq.gz 2.6 GB Report
EGAF00005447013 fastq.gz 3.6 GB Report
EGAF00005447014 fastq.gz 2.1 GB Report
EGAF00005447015 fastq.gz 3.1 GB Report
EGAF00005447016 fastq.gz 2.9 GB Report
EGAF00005447017 fastq.gz 3.9 GB Report
EGAF00005447018 fastq.gz 3.4 GB Report
EGAF00005447019 fastq.gz 4.8 GB Report
EGAF00005447020 fastq.gz 2.9 GB Report
EGAF00005447021 fastq.gz 4.4 GB Report
EGAF00005447022 fastq.gz 2.3 GB Report
EGAF00005447023 fastq.gz 3.4 GB Report
EGAF00005447024 fastq.gz 3.2 GB Report
EGAF00005447025 fastq.gz 4.8 GB Report
EGAF00005447026 fastq.gz 2.0 GB Report
EGAF00005447027 fastq.gz 3.0 GB Report
EGAF00005447028 fastq.gz 2.4 GB Report
EGAF00005447029 fastq.gz 3.3 GB Report
EGAF00005447030 fastq.gz 2.6 GB Report
EGAF00005447031 fastq.gz 3.7 GB Report
EGAF00005447032 fastq.gz 2.4 GB Report
EGAF00005447033 fastq.gz 3.5 GB Report
EGAF00005447034 fastq.gz 2.0 GB Report
EGAF00005447035 fastq.gz 3.0 GB Report
EGAF00005447036 fastq.gz 2.7 GB Report
EGAF00005447037 fastq.gz 3.8 GB Report
EGAF00005447038 fastq.gz 2.9 GB Report
EGAF00005447039 fastq.gz 4.0 GB Report
EGAF00005447040 fastq.gz 2.5 GB Report
EGAF00005447041 fastq.gz 3.9 GB Report
EGAF00005447042 fastq.gz 2.5 GB Report
EGAF00005447043 fastq.gz 3.7 GB Report
EGAF00005447044 fastq.gz 3.2 GB Report
EGAF00005447045 fastq.gz 4.5 GB Report
EGAF00005447046 fastq.gz 2.8 GB Report
EGAF00005447047 fastq.gz 4.4 GB Report
EGAF00005447048 fastq.gz 3.3 GB Report
EGAF00005447049 fastq.gz 4.3 GB Report
72 Files (232.6 GB)