Neuroblastoma patient Total RNA Seq data

Tumor Total RNA Seq data of primary neuroblastomas. This is an update of the „Berlin Neuroblastoma Dataset” (EGAS00001004022). This data was used for the analysis of circular RNA expression and regulation in neuroblastoma.

105 samples
DAC: EGAC00001002310
Technology: Illumina HiSeq 4000

Access Policy1 Study Files

Metadata

Request Access

PUB DUO:0000019 (version: 2019-01-07)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
GRU DUO:0000042 (version: 2019-01-07)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.

Data access policy to access neuroblastoma dataset

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Berlin Neuroblastoma Cohort DAC (Prof. Dr. Schulte) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Prof. Dr. Schulte and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. DAC: The Berlin Neuroblastoma Cohort DAC Prof. Dr. Schulte: Department of Pediatric Oncology, Charite Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the following Publication Policy: In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with the Berlin Neuroblastoma Cohort DAC. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Prof. Dr. Schulte. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the Federal Republic of Germany.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001005604	Berlin Neuroblastoma Dataset Update 2021	Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00005478153	fastq.gz	23.9 GB
EGAF00005478154	fastq.gz	25.6 GB
EGAF00005478155	fastq.gz	8.9 GB
EGAF00005478156	fastq.gz	9.2 GB
EGAF00005478157	fastq.gz	8.4 GB
EGAF00005478158	fastq.gz	8.3 GB
EGAF00005478159	fastq.gz	8.8 GB
EGAF00005478160	fastq.gz	9.4 GB
EGAF00005478161	fastq.gz	8.6 GB
EGAF00005478162	fastq.gz	9.7 GB
EGAF00005478163	fastq.gz	8.4 GB
EGAF00005478164	fastq.gz	9.7 GB
EGAF00005478165	fastq.gz	9.5 GB
EGAF00005478166	fastq.gz	10.4 GB
EGAF00005478167	fastq.gz	9.2 GB
EGAF00005478168	fastq.gz	10.8 GB
EGAF00005478169	fastq.gz	8.8 GB
EGAF00005478170	fastq.gz	9.2 GB
EGAF00005478171	fastq.gz	5.8 GB
EGAF00005478172	fastq.gz	6.3 GB
EGAF00005478173	fastq.gz	7.3 GB
EGAF00005478174	fastq.gz	7.2 GB
EGAF00005478175	fastq.gz	9.0 GB
EGAF00005478176	fastq.gz	10.3 GB
EGAF00005478177	fastq.gz	8.0 GB
EGAF00005478178	fastq.gz	8.4 GB
EGAF00005478179	fastq.gz	7.8 GB
EGAF00005478180	fastq.gz	8.7 GB
EGAF00005478181	fastq.gz	5.6 GB
EGAF00005478182	fastq.gz	6.1 GB
EGAF00005478183	fastq.gz	9.7 GB
EGAF00005478184	fastq.gz	10.3 GB
EGAF00005478185	fastq.gz	9.6 GB
EGAF00005478186	fastq.gz	10.1 GB
EGAF00005478187	fastq.gz	10.2 GB
EGAF00005478188	fastq.gz	11.3 GB
EGAF00005478189	fastq.gz	8.0 GB
EGAF00005478190	fastq.gz	8.6 GB
EGAF00005478191	fastq.gz	11.1 GB
EGAF00005478192	fastq.gz	11.0 GB
EGAF00005478193	fastq.gz	15.9 GB
EGAF00005478194	fastq.gz	16.8 GB
EGAF00005478195	fastq.gz	8.9 GB
EGAF00005478196	fastq.gz	9.6 GB
EGAF00005478197	fastq.gz	7.3 GB
EGAF00005478198	fastq.gz	8.5 GB
EGAF00005478199	fastq.gz	8.6 GB
EGAF00005478200	fastq.gz	9.4 GB
EGAF00005478201	fastq.gz	7.2 GB
EGAF00005478202	fastq.gz	7.9 GB
EGAF00005478203	fastq.gz	7.4 GB
EGAF00005478204	fastq.gz	7.8 GB
EGAF00005478205	fastq.gz	8.3 GB
EGAF00005478206	fastq.gz	9.1 GB
EGAF00005478207	fastq.gz	8.8 GB
EGAF00005478208	fastq.gz	9.3 GB
EGAF00005478209	fastq.gz	8.9 GB
EGAF00005478210	fastq.gz	9.3 GB
EGAF00005478211	fastq.gz	9.9 GB
EGAF00005478212	fastq.gz	11.0 GB
EGAF00005478213	fastq.gz	8.3 GB
EGAF00005478214	fastq.gz	9.9 GB
EGAF00005478215	fastq.gz	7.9 GB
EGAF00005478216	fastq.gz	8.3 GB
EGAF00005478217	fastq.gz	8.5 GB
EGAF00005478218	fastq.gz	9.1 GB
EGAF00005478219	fastq.gz	8.2 GB
EGAF00005478220	fastq.gz	8.6 GB
EGAF00005478221	fastq.gz	7.4 GB
EGAF00005478222	fastq.gz	8.5 GB
EGAF00005478223	fastq.gz	16.9 GB
EGAF00005478224	fastq.gz	17.8 GB
EGAF00005478225	fastq.gz	14.5 GB
EGAF00005478226	fastq.gz	16.3 GB
EGAF00005478227	fastq.gz	6.3 GB
EGAF00005478228	fastq.gz	6.8 GB
EGAF00005478229	fastq.gz	7.9 GB
EGAF00005478230	fastq.gz	9.3 GB
EGAF00005478231	fastq.gz	7.0 GB
EGAF00005478232	fastq.gz	7.7 GB
EGAF00005478233	fastq.gz	6.0 GB
EGAF00005478234	fastq.gz	6.4 GB
EGAF00005478235	fastq.gz	7.7 GB
EGAF00005478236	fastq.gz	7.8 GB
EGAF00005478237	fastq.gz	8.2 GB
EGAF00005478238	fastq.gz	9.6 GB
EGAF00005478239	fastq.gz	7.2 GB
EGAF00005478240	fastq.gz	7.5 GB
EGAF00005478241	fastq.gz	7.5 GB
EGAF00005478242	fastq.gz	7.7 GB
EGAF00005478243	fastq.gz	21.4 GB
EGAF00005478244	fastq.gz	21.6 GB
EGAF00005478245	fastq.gz	14.1 GB
EGAF00005478246	fastq.gz	15.7 GB
EGAF00005478247	fastq.gz	13.4 GB
EGAF00005478248	fastq.gz	13.6 GB
EGAF00005478249	fastq.gz	11.7 GB
EGAF00005478250	fastq.gz	12.4 GB
EGAF00005478251	fastq.gz	24.8 GB
EGAF00005478252	fastq.gz	25.8 GB
EGAF00005478253	fastq.gz	6.9 GB
EGAF00005478254	fastq.gz	8.0 GB
EGAF00005478255	fastq.gz	7.6 GB
EGAF00005478256	fastq.gz	8.2 GB
EGAF00005478257	fastq.gz	16.5 GB
EGAF00005478258	fastq.gz	17.2 GB
EGAF00005478259	fastq.gz	14.8 GB
EGAF00005478260	fastq.gz	16.6 GB
EGAF00005478261	fastq.gz	9.7 GB
EGAF00005478262	fastq.gz	11.2 GB
EGAF00005478263	fastq.gz	8.2 GB
EGAF00005478264	fastq.gz	8.6 GB
EGAF00005478265	fastq.gz	7.6 GB
EGAF00005478266	fastq.gz	8.3 GB
EGAF00005478267	fastq.gz	7.6 GB
EGAF00005478268	fastq.gz	8.1 GB
EGAF00005478269	fastq.gz	9.9 GB
EGAF00005478270	fastq.gz	10.2 GB
EGAF00005478271	fastq.gz	17.5 GB
EGAF00005478272	fastq.gz	18.3 GB
EGAF00005478273	fastq.gz	12.5 GB
EGAF00005478274	fastq.gz	12.1 GB
EGAF00005478275	fastq.gz	9.4 GB
EGAF00005478276	fastq.gz	10.8 GB
EGAF00005478277	fastq.gz	6.3 GB
EGAF00005478278	fastq.gz	7.0 GB
EGAF00005478279	fastq.gz	9.8 GB
EGAF00005478280	fastq.gz	11.0 GB
EGAF00005478281	fastq.gz	10.4 GB
EGAF00005478282	fastq.gz	12.5 GB
EGAF00005478283	fastq.gz	7.8 GB
EGAF00005478284	fastq.gz	9.1 GB
EGAF00005478285	fastq.gz	7.6 GB
EGAF00005478286	fastq.gz	8.7 GB
EGAF00005478287	fastq.gz	7.2 GB
EGAF00005478288	fastq.gz	8.0 GB
EGAF00005478289	fastq.gz	11.5 GB
EGAF00005478290	fastq.gz	12.8 GB
EGAF00005478291	fastq.gz	8.3 GB
EGAF00005478292	fastq.gz	8.6 GB
EGAF00005478293	fastq.gz	6.5 GB
EGAF00005478294	fastq.gz	7.0 GB
EGAF00005478295	fastq.gz	10.0 GB
EGAF00005478296	fastq.gz	10.3 GB
EGAF00005478297	fastq.gz	15.1 GB
EGAF00005478298	fastq.gz	17.2 GB
EGAF00005478299	fastq.gz	17.3 GB
EGAF00005478300	fastq.gz	18.7 GB
EGAF00005478301	fastq.gz	8.9 GB
EGAF00005478302	fastq.gz	10.0 GB
EGAF00005478303	fastq.gz	13.1 GB
EGAF00005478304	fastq.gz	14.6 GB
EGAF00005478305	fastq.gz	5.6 GB
EGAF00005478306	fastq.gz	6.1 GB
EGAF00005478307	fastq.gz	8.9 GB
EGAF00005478308	fastq.gz	9.6 GB
EGAF00005478309	fastq.gz	9.5 GB
EGAF00005478310	fastq.gz	10.3 GB
EGAF00005478311	fastq.gz	7.6 GB
EGAF00005478312	fastq.gz	8.1 GB
EGAF00005478313	fastq.gz	6.0 GB
EGAF00005478314	fastq.gz	6.5 GB
EGAF00005478315	fastq.gz	11.2 GB
EGAF00005478316	fastq.gz	12.8 GB
EGAF00005478317	fastq.gz	9.9 GB
EGAF00005478318	fastq.gz	11.4 GB
EGAF00005478319	fastq.gz	7.1 GB
EGAF00005478320	fastq.gz	8.1 GB
EGAF00005478321	fastq.gz	6.4 GB
EGAF00005478322	fastq.gz	6.6 GB
EGAF00005478323	fastq.gz	7.2 GB
EGAF00005478324	fastq.gz	7.9 GB
EGAF00005478325	fastq.gz	19.0 GB
EGAF00005478326	fastq.gz	19.0 GB
EGAF00005478327	fastq.gz	8.0 GB
EGAF00005478328	fastq.gz	8.5 GB
EGAF00005478329	fastq.gz	11.3 GB
EGAF00005478330	fastq.gz	11.9 GB
EGAF00005478331	fastq.gz	9.1 GB
EGAF00005478332	fastq.gz	10.6 GB
EGAF00005478333	fastq.gz	5.1 GB
EGAF00005478334	fastq.gz	5.6 GB
EGAF00005478335	fastq.gz	8.2 GB
EGAF00005478336	fastq.gz	9.2 GB
EGAF00005478337	fastq.gz	8.6 GB
EGAF00005478338	fastq.gz	9.8 GB
EGAF00005478339	fastq.gz	5.5 GB
EGAF00005478340	fastq.gz	6.1 GB
EGAF00005478341	fastq.gz	10.8 GB
EGAF00005478342	fastq.gz	12.1 GB
EGAF00005478343	fastq.gz	8.9 GB
EGAF00005478344	fastq.gz	10.2 GB
EGAF00005478345	fastq.gz	7.1 GB
EGAF00005478346	fastq.gz	7.6 GB
EGAF00005478347	fastq.gz	7.9 GB
EGAF00005478348	fastq.gz	9.0 GB
EGAF00005478349	fastq.gz	9.0 GB
EGAF00005478350	fastq.gz	10.3 GB
EGAF00005478351	fastq.gz	7.6 GB
EGAF00005478352	fastq.gz	8.3 GB
EGAF00005478353	fastq.gz	18.9 GB
EGAF00005478354	fastq.gz	20.7 GB
EGAF00005478355	fastq.gz	13.6 GB
EGAF00005478356	fastq.gz	14.7 GB
EGAF00005478357	fastq.gz	5.7 GB
EGAF00005478358	fastq.gz	6.3 GB
EGAF00005478359	fastq.gz	7.7 GB
EGAF00005478360	fastq.gz	8.6 GB
EGAF00005478361	fastq.gz	9.3 GB
EGAF00005478362	fastq.gz	10.2 GB
210 Files (2.1 TB)