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Whole genome landscape of adult T-cell leukemia/lymphoma

Whole-genome sequence (WGS) data of tumor-normal pairs from 139 ATL patients and RNA sequence (RNA-seq) data of tumors from 28 ATL patients.

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Division of Molecular Oncology National Cancer Center Research Institute Data Access Committee DATA ACCESS AGREEMENT

Division of Molecular Oncology National Cancer Center Research Institute Data Access Committee DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”) governs the terms on which access will be granted to the sequence data generated by the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee. In signing this Agreement, the User agrees to be bound by the terms and conditions of access set out in this Agreement. For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly. Definitions: Project team means Division of Molecular Oncology, National Cancer Center Research Institute, Tokyo, Japan. Data means all sequence data set of patient with adult T-cell leukemia/lymphoma, obtained from the Project team. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the Data provided under this Agreement to other information or archive Data available for the data sets provided, even if access to that Data has been formally granted to You, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the Data for the approved purpose and project described in Your application; use of the Data for a new purpose or project will require a new application and approval. 7. A Data access account using a non-institutional email address is established if You agree to notify EGA and the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee within 30 days of any changes of, or departures from the institution specified in Your application. 8. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 9. You agree to abide by the terms outlined in the Project team 'Publications Policy' as set out in Schedule 1. 10. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the Project team. Suitable wording is provided in the Publications Policy given in Schedule 1. 11. You accept that the Project team, the original Data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 12. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 13. You recognise that nothing in this Agreement shall operate to transfer to You any intellectual property rights relating to the Data. You have the right to develop intellectual property based on comparisons with Your own data. 14. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of the Data, or conclusion drawn directly from the Data. 15. You can elect to perform further research that would add intellectual and resource capital to the Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further research, and follow the U.S. National Institutes of Health’s, Best Practices for the Licensing of Genomic Inventions or a similar national guideline that is in conformity with the OECD, Guidelines for the Licensing of the Genetic Inventions. 16. You agree to notify the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee in writing of any new intellectual property. You agree to, on request, provide a non-exclusive, royalty-free licence to the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee for their own research and educational uses. 17. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. 18. You accept that it may be necessary for the Project team or its appointed agent to alter the terms of this Agreement from time to time in order to address new concerns. In this event, the Project team or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 19. Access to the Data is granted for a period of 2 years. Where it is necessary to extend the period of access, You agree to contact the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee, in advance of the expiry of the period of access. At the end of the period of access, You agree to destroy all copies of the Data, except as required by publication practices or law to retain them. 20. You agree that You will submit a report to the Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee, if requested, on completion of the agreed purpose. The Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to You. 21. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The Division of Molecular Oncology, National Cancer Center Research Institute Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in Japan. 22. This Agreement shall be governed by, and construed and interpreted under the laws of Japan. All dispute pertaining to this Agreement shall be subject to the exclusive jurisdiction of the Tokyo District Court of Japan for the first instance.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005237 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005497191 bam 4.3 GB
EGAF00005497192 bam 3.7 GB
EGAF00005497193 bam 4.1 GB
EGAF00005497194 bam 4.3 GB
EGAF00005497195 bam 4.1 GB
EGAF00005497196 bam 5.8 GB
EGAF00005497197 bam 7.0 GB
EGAF00005497198 bam 5.5 GB
EGAF00005497199 bam 5.8 GB
EGAF00005497200 bam 3.8 GB
EGAF00005497201 bam 3.4 GB
EGAF00005497202 bam 3.6 GB
EGAF00005497203 bam 3.8 GB
EGAF00005497204 bam 5.2 GB
EGAF00005497205 bam 4.0 GB
EGAF00005497206 bam 3.9 GB
EGAF00005497207 bam 4.5 GB
EGAF00005497208 bam 5.0 GB
EGAF00005497209 bam 5.2 GB
EGAF00005497210 bam 5.6 GB
EGAF00005497211 bam 4.7 GB
EGAF00005497212 bam 4.6 GB
EGAF00005497213 bam 5.5 GB
EGAF00005497214 bam 4.0 GB
EGAF00005497215 bam 4.5 GB
EGAF00005498561 bam 69.0 GB
EGAF00005498582 bam 76.5 GB
EGAF00005498583 bam 70.4 GB
EGAF00005498584 bam 100.3 GB
EGAF00005498585 bam 83.3 GB
EGAF00005498586 bam 64.9 GB
EGAF00005498587 bam 67.3 GB
EGAF00005498588 bam 73.2 GB
EGAF00005498589 bam 64.3 GB
EGAF00005498590 bam 65.7 GB
EGAF00005498592 bam 78.0 GB
EGAF00005498593 bam 77.8 GB
EGAF00005498594 bam 62.7 GB
EGAF00005498595 bam 70.0 GB
EGAF00005498596 bam 71.6 GB
EGAF00005498597 bam 81.3 GB
EGAF00005498598 bam 84.5 GB
EGAF00005498599 bam 70.0 GB
EGAF00005498600 bam 76.4 GB
EGAF00005498601 bam 84.4 GB
EGAF00005498603 bam 76.0 GB
EGAF00005498604 bam 72.7 GB
EGAF00005498776 bam 46.2 GB
EGAF00005498777 bam 53.1 GB
EGAF00005498778 bam 50.5 GB
EGAF00005498779 bam 49.8 GB
EGAF00005498780 bam 82.7 GB
EGAF00005498781 bam 39.8 GB
EGAF00005498782 bam 49.0 GB
EGAF00005498783 bam 43.3 GB
EGAF00005498784 bam 109.2 GB
EGAF00005498785 bam 48.2 GB
EGAF00005498786 bam 43.5 GB
EGAF00005498787 bam 50.9 GB
EGAF00005498788 bam 63.0 GB
EGAF00005498789 bam 37.6 GB
EGAF00005498790 bam 41.2 GB
EGAF00005498791 bam 51.1 GB
EGAF00005498792 bam 50.5 GB
EGAF00005498793 bam 52.5 GB
EGAF00005498794 bam 39.8 GB
EGAF00005498795 bam 44.3 GB
EGAF00005498796 bam 53.3 GB
EGAF00005498797 bam 52.8 GB
EGAF00005498798 bam 43.4 GB
EGAF00005498799 bam 51.3 GB
EGAF00005498800 bam 52.5 GB
EGAF00005498801 bam 49.7 GB
EGAF00005498802 bam 46.0 GB
EGAF00005498803 bam 49.5 GB
EGAF00005498804 bam 42.3 GB
EGAF00005498805 bam 54.6 GB
EGAF00005498806 bam 35.9 GB
EGAF00005498807 bam 42.6 GB
EGAF00005498808 bam 46.0 GB
EGAF00005498809 bam 41.3 GB
EGAF00005498810 bam 46.3 GB
EGAF00005498811 bam 40.5 GB
EGAF00005498812 bam 47.2 GB
EGAF00005498813 bam 52.1 GB
EGAF00005498814 bam 46.7 GB
EGAF00005498815 bam 66.4 GB
EGAF00005498816 bam 50.9 GB
EGAF00005498817 bam 48.7 GB
EGAF00005498818 bam 57.0 GB
EGAF00005498819 bam 44.5 GB
EGAF00005498820 bam 48.0 GB
EGAF00005498821 bam 47.9 GB
EGAF00005498822 bam 48.2 GB
EGAF00005498823 bam 43.7 GB
EGAF00005498824 bam 55.6 GB
EGAF00005498825 bam 48.9 GB
EGAF00005498826 bam 48.2 GB
EGAF00005498827 bam 45.3 GB
EGAF00005498828 bam 54.1 GB
EGAF00005498829 bam 44.8 GB
EGAF00005498830 bam 40.6 GB
EGAF00005498831 bam 47.9 GB
EGAF00005498832 bam 50.3 GB
EGAF00005498833 bam 54.3 GB
EGAF00005498834 bam 104.7 GB
EGAF00005498835 bam 61.2 GB
EGAF00005498836 bam 75.5 GB
EGAF00005498837 bam 75.0 GB
EGAF00005498838 bam 99.9 GB
EGAF00005498839 bam 107.3 GB
EGAF00005498840 bam 78.7 GB
EGAF00005498841 bam 44.4 GB
EGAF00005498842 bam 40.8 GB
EGAF00005498843 bam 46.6 GB
EGAF00005498844 bam 45.2 GB
EGAF00005498845 bam 47.0 GB
EGAF00005498846 bam 38.4 GB
EGAF00005498847 bam 52.7 GB
EGAF00005498848 bam 77.7 GB
EGAF00005498849 bam 56.8 GB
EGAF00005498850 bam 61.7 GB
EGAF00005498851 bam 68.2 GB
EGAF00005498852 bam 87.9 GB
EGAF00005498853 bam 43.3 GB
EGAF00005498854 bam 39.3 GB
EGAF00005498855 bam 42.3 GB
EGAF00005498856 bam 78.4 GB
EGAF00005498857 bam 61.3 GB
EGAF00005498858 bam 52.7 GB
EGAF00005498859 bam 46.4 GB
EGAF00005498860 bam 47.2 GB
EGAF00005498861 bam 47.8 GB
EGAF00005498862 bam 54.6 GB
EGAF00005498863 bam 42.4 GB
EGAF00005498864 bam 45.2 GB
EGAF00005498865 bam 43.7 GB
EGAF00005498866 bam 54.5 GB
EGAF00005498867 bam 53.2 GB
EGAF00005498868 bam 41.0 GB
EGAF00005498869 bam 57.8 GB
EGAF00005498870 bam 42.5 GB
EGAF00005498871 bam 48.1 GB
EGAF00005498872 bam 45.5 GB
EGAF00005498873 bam 43.9 GB
EGAF00005498874 bam 42.9 GB
EGAF00005498875 bam 55.2 GB
EGAF00005498876 bam 45.2 GB
EGAF00005498877 bam 42.5 GB
EGAF00005498878 bam 49.2 GB
EGAF00005498879 bam 36.4 GB
EGAF00005498880 bam 33.7 GB
EGAF00005498881 bam 45.3 GB
EGAF00005498882 bam 34.6 GB
EGAF00005498883 bam 78.0 GB
EGAF00005498884 bam 40.7 GB
EGAF00005498885 bam 51.4 GB
EGAF00005498886 bam 33.9 GB
EGAF00005498887 bam 32.7 GB
EGAF00005498888 bam 39.0 GB
EGAF00005498889 bam 65.2 GB
EGAF00005498890 bam 34.1 GB
EGAF00005498891 bam 43.4 GB
EGAF00005498892 bam 55.5 GB
EGAF00005501801 bam 5.0 GB
EGAF00005501802 bam 5.5 GB
EGAF00005501803 bam 6.0 GB
EGAF00005555862 bam 99.1 GB
EGAF00005555863 bam 104.5 GB
EGAF00005555864 bam 116.3 GB
EGAF00005555865 bam 105.4 GB
EGAF00005555866 bam 118.7 GB
EGAF00005555867 bam 110.7 GB
EGAF00005555868 bam 112.4 GB
EGAF00005555869 bam 126.7 GB
EGAF00005555870 bam 110.6 GB
EGAF00005555871 bam 122.3 GB
EGAF00005555872 bam 113.2 GB
EGAF00005555873 bam 110.4 GB
EGAF00005555874 bam 110.4 GB
EGAF00005555875 bam 106.7 GB
EGAF00005555876 bam 100.7 GB
EGAF00005555877 bam 141.3 GB
EGAF00005555878 bam 138.7 GB
EGAF00005555879 bam 99.8 GB
EGAF00005555880 bam 121.7 GB
EGAF00005555881 bam 124.7 GB
EGAF00005555882 bam 114.7 GB
EGAF00005555883 bam 129.5 GB
EGAF00005555884 bam 122.5 GB
EGAF00005555885 bam 110.2 GB
EGAF00005555886 bam 107.8 GB
EGAF00005555887 bam 109.6 GB
EGAF00005555888 bam 132.7 GB
EGAF00005555889 bam 110.6 GB
EGAF00005555890 bam 110.6 GB
EGAF00005555891 bam 109.7 GB
EGAF00005555892 bam 111.1 GB
EGAF00005555893 bam 109.0 GB
EGAF00005555894 bam 110.2 GB
EGAF00005555895 bam 108.9 GB
EGAF00005555896 bam 109.1 GB
EGAF00005555897 bam 132.1 GB
EGAF00005555898 bam 136.6 GB
EGAF00005555899 bam 124.3 GB
EGAF00005555900 bam 126.4 GB
EGAF00005555901 bam 136.5 GB
EGAF00005555902 bam 139.4 GB
EGAF00005555903 bam 124.5 GB
EGAF00005555904 bam 121.0 GB
EGAF00005555905 bam 125.2 GB
EGAF00005555906 bam 129.8 GB
EGAF00005555907 bam 136.6 GB
EGAF00005555908 bam 123.0 GB
EGAF00005555909 bam 128.2 GB
EGAF00005555910 bam 125.4 GB
EGAF00005555911 bam 129.6 GB
EGAF00005558936 bam 164.2 GB
EGAF00005558937 bam 177.1 GB
EGAF00005558938 bam 138.0 GB
EGAF00005558939 bam 175.9 GB
EGAF00005558940 bam 135.0 GB
EGAF00005558941 bam 137.5 GB
EGAF00005558942 bam 141.4 GB
EGAF00005558943 bam 162.8 GB
EGAF00005558944 bam 139.0 GB
EGAF00005558945 bam 118.0 GB
EGAF00005558946 bam 120.9 GB
EGAF00005558947 bam 119.2 GB
EGAF00005558948 bam 126.3 GB
EGAF00005558949 bam 124.6 GB
EGAF00005558950 bam 121.7 GB
EGAF00005558951 bam 121.5 GB
EGAF00005558952 bam 130.0 GB
EGAF00005558953 bam 146.8 GB
EGAF00005558954 bam 124.6 GB
EGAF00005558955 bam 145.5 GB
EGAF00005558956 bam 175.5 GB
EGAF00005558957 bam 150.2 GB
EGAF00005558958 bam 136.1 GB
EGAF00005558959 bam 133.1 GB
EGAF00005558960 bam 116.4 GB
EGAF00005558961 bam 121.2 GB
EGAF00005558962 bam 154.6 GB
EGAF00005558963 bam 123.7 GB
EGAF00005558964 bam 108.1 GB
EGAF00005558965 bam 100.1 GB
EGAF00005558966 bam 101.4 GB
EGAF00005558967 bam 92.6 GB
EGAF00005558968 bam 99.2 GB
EGAF00005558969 bam 111.2 GB
EGAF00005558970 bam 82.4 GB
EGAF00005558971 bam 82.5 GB
EGAF00005558972 bam 86.8 GB
EGAF00005558973 bam 97.3 GB
EGAF00005558974 bam 100.7 GB
EGAF00005558975 bam 79.0 GB
EGAF00005558976 bam 89.3 GB
EGAF00005558977 bam 100.7 GB
EGAF00005558978 bam 92.7 GB
EGAF00005558979 bam 91.1 GB
EGAF00005558980 bam 78.6 GB
EGAF00005558981 bam 90.3 GB
EGAF00005558982 bam 96.6 GB
EGAF00005558983 bam 91.9 GB
EGAF00005558984 bam 95.7 GB
EGAF00005560645 bam 123.0 GB
EGAF00005560646 bam 116.9 GB
EGAF00005560647 bam 165.2 GB
EGAF00005560648 bam 134.0 GB
EGAF00005560649 bam 146.1 GB
EGAF00005560650 bam 122.0 GB
EGAF00005560651 bam 118.8 GB
EGAF00005560652 bam 121.3 GB
EGAF00005560653 bam 112.5 GB
EGAF00005560654 bam 100.6 GB
EGAF00005560655 bam 127.0 GB
EGAF00005560656 bam 110.2 GB
EGAF00005560657 bam 128.4 GB
EGAF00005560658 bam 135.1 GB
EGAF00005560659 bam 133.1 GB
EGAF00005560660 bam 121.6 GB
EGAF00005560661 bam 109.1 GB
EGAF00005560662 bam 119.2 GB
EGAF00005560663 bam 115.7 GB
EGAF00005560664 bam 123.8 GB
EGAF00005560665 bam 122.9 GB
EGAF00005560666 bam 125.3 GB
EGAF00005560667 bam 111.7 GB
EGAF00005560668 bam 135.4 GB
EGAF00005560669 bam 120.1 GB
EGAF00005560670 bam 106.9 GB
EGAF00005560671 bam 131.4 GB
EGAF00005560672 bam 110.1 GB
EGAF00005560673 bam 136.3 GB
EGAF00005560674 bam 130.0 GB
EGAF00005560675 bam 128.7 GB
EGAF00005560676 bam 145.4 GB
EGAF00005560677 bam 143.2 GB
EGAF00005560678 bam 127.0 GB
EGAF00005560679 bam 155.8 GB
EGAF00005560680 bam 100.5 GB
EGAF00005560681 bam 133.2 GB
EGAF00005560682 bam 168.2 GB
EGAF00005566568 bam 111.6 GB
EGAF00005566569 bam 111.0 GB
306 Files (24.6 TB)