About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Human normal esophagus and Barrett's esophagus mtDNA sequencing

BAM files containing paired-end mtDNA sequencing data from human esophageal samples of individuals that had progressed to dysplasia or developed Barrett's esophagus (BE) post-esophagectomy. BE biopsies and the background mucosa were analysed. Each patient (JE*) has associated mtDNA sequencing data from biopsies of stroma, BE and squamous and cardia tissue. Two technical replicates, denoted "A" and "B", were analysed for each biopsy. Libraries were sequenced via the Illumina MiSeq platform v2 (Illumina, San Diego, CA, USA) 300 cycles (150 nt paired-end).

Request Access

Barts Cancer Institute (Queen Mary University of London) System Access Controls Policy, Storage of Information Policy and Information Security Policy

System Access policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2020/12/DG11-System-Access-Controls-Policy-V2.0.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E Storage of Information policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2020/12/DG14-Storage-of-Information-Policy-V2.0.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E Information Security policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2021/04/BCC-Information-Security-Policy-v3.2.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005729 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005575623 bam 52.6 MB Report
EGAF00005575624 bam 90.9 MB Report
EGAF00005575625 bam 72.5 MB Report
EGAF00005575626 bam 60.5 MB Report
EGAF00005575627 bam 91.5 MB Report
EGAF00005575628 bam 153.3 MB Report
EGAF00005575629 bam 95.4 MB Report
EGAF00005575630 bam 78.1 MB Report
EGAF00005575631 bam 84.7 MB Report
EGAF00005575632 bam 67.2 MB Report
EGAF00005575633 bam 79.3 MB Report
EGAF00005575634 bam 97.4 MB Report
EGAF00005575635 bam 94.3 MB Report
EGAF00005575636 bam 86.7 MB Report
EGAF00005575637 bam 67.2 MB Report
EGAF00005575638 bam 42.2 MB Report
EGAF00005575639 bam 96.0 MB Report
EGAF00005575640 bam 85.3 MB Report
EGAF00005575641 bam 117.8 MB Report
EGAF00005575642 bam 74.1 MB Report
EGAF00005575643 bam 36.5 MB Report
EGAF00005575644 bam 78.3 MB Report
EGAF00005575645 bam 153.9 MB Report
EGAF00005575646 bam 117.4 MB Report
EGAF00005575647 bam 79.6 MB Report
EGAF00005575648 bam 64.7 MB Report
EGAF00005575649 bam 74.8 MB Report
EGAF00005575650 bam 48.8 MB Report
EGAF00005575651 bam 124.7 MB Report
EGAF00005575652 bam 43.9 MB Report
EGAF00005575653 bam 90.5 MB Report
EGAF00005575654 bam 95.2 MB Report
EGAF00005575655 bam 53.9 MB Report
EGAF00005575656 bam 139.5 MB Report
EGAF00005575657 bam 46.1 MB Report
EGAF00005575658 bam 67.3 MB Report
EGAF00005575659 bam 93.8 MB Report
EGAF00005575660 bam 96.4 MB Report
EGAF00005575661 bam 76.5 MB Report
EGAF00005575662 bam 100.1 MB Report
EGAF00005575663 bam 70.6 MB Report
EGAF00005575664 bam 46.5 MB Report
EGAF00005575665 bam 54.2 MB Report
EGAF00005575666 bam 70.1 MB Report
EGAF00005575667 bam 84.7 MB Report
EGAF00005575668 bam 71.0 MB Report
EGAF00005575669 bam 99.5 MB Report
EGAF00005575670 bam 57.8 MB Report
EGAF00005575671 bam 64.2 MB Report
EGAF00005575672 bam 122.7 MB Report
EGAF00005575673 bam 105.3 MB Report
EGAF00005575674 bam 106.7 MB Report
EGAF00005575675 bam 67.1 MB Report
EGAF00005575676 bam 64.6 MB Report
EGAF00005575677 bam 84.6 MB Report
EGAF00005575678 bam 105.4 MB Report
EGAF00005575679 bam 73.0 MB Report
EGAF00005575680 bam 89.0 MB Report
EGAF00005575681 bam 50.7 MB Report
EGAF00005575682 bam 107.4 MB Report
EGAF00005575683 bam 81.0 MB Report
EGAF00005575684 bam 70.7 MB Report
EGAF00005575685 bam 92.0 MB Report
EGAF00005575686 bam 82.2 MB Report
EGAF00005575687 bam 114.1 MB Report
EGAF00005575688 bam 77.7 MB Report
EGAF00005575689 bam 77.1 MB Report
EGAF00005575690 bam 65.4 MB Report
EGAF00005575691 bam 46.1 MB Report
EGAF00005575692 bam 76.6 MB Report
EGAF00005575693 bam 62.8 MB Report
EGAF00005575694 bam 82.2 MB Report
EGAF00005575695 bam 59.8 MB Report
EGAF00005575696 bam 91.0 MB Report
EGAF00005575697 bam 83.6 MB Report
EGAF00005575698 bam 157.6 MB Report
EGAF00005575699 bam 57.0 MB Report
EGAF00005575700 bam 58.6 MB Report
EGAF00005575701 bam 78.7 MB Report
EGAF00005575702 bam 223.3 MB Report
80 Files (6.7 GB)