About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Lung cancer, healthy control and non-cancerous plasma cfDNA samples

The dataset contains 106 lung cancer, 12 healthy control and 11 non-cancerous lesion plasma cfDNA sample. Shallow WGS was performed on an Illumina Novaseq S4 PE150bp. Samples are provided as raw reads without any prior processing.

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DAP for FMseq_EGA_002

Data Access Policy Form – Mouliere Lab, Vrije University Medical Center Amsterdam These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. The current text is just the first part of the DAP. Please download and fill in the full version from the link provided! Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: The Amsterdam University Medical Center, location VUmc, De Boelelaan 1118, 1081 HZ Amsterdam; represented by Florent C. Mouliere, and contactable by email at f.mouliere@amsterdamumc.nl or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number or hospital number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of the Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree to acknowledge in any Publication and Communications based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. You recognize that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organizational measures against the unauthorized or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A You acknowledge and agree that the Data is pseudonymized Data and that You will become the Data Controller on receipt of such Data. You will only process the Data for the purpose of carrying out the Project. You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. You agree that You shall not analyze or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data. Schedule B For schedule B please download the full version of this DAP from the link provided.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005747 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005578504 fastq.gz 1.6 GB Report
EGAF00005578505 fastq.gz 1.6 GB Report
EGAF00005578506 fastq.gz 4.9 GB Report
EGAF00005578507 fastq.gz 5.1 GB Report
EGAF00005578508 fastq.gz 4.2 GB Report
EGAF00005578509 fastq.gz 4.3 GB Report
EGAF00005578510 fastq.gz 10.5 GB Report
EGAF00005578511 fastq.gz 10.8 GB Report
EGAF00005578512 fastq.gz 2.0 GB Report
EGAF00005578513 fastq.gz 2.1 GB Report
EGAF00005578514 fastq.gz 4.4 GB Report
EGAF00005578515 fastq.gz 4.6 GB Report
EGAF00005578516 fastq.gz 4.6 GB Report
EGAF00005578517 fastq.gz 4.7 GB Report
EGAF00005578518 fastq.gz 1.7 GB Report
EGAF00005578519 fastq.gz 1.7 GB Report
EGAF00005578520 fastq.gz 4.4 GB Report
EGAF00005578521 fastq.gz 4.5 GB Report
EGAF00005578522 fastq.gz 3.2 GB Report
EGAF00005578523 fastq.gz 3.3 GB Report
EGAF00005578524 fastq.gz 1.3 GB Report
EGAF00005578525 fastq.gz 1.4 GB Report
EGAF00005578526 fastq.gz 2.3 GB Report
EGAF00005578527 fastq.gz 2.4 GB Report
EGAF00005578528 fastq.gz 7.2 GB Report
EGAF00005578529 fastq.gz 7.5 GB Report
EGAF00005578530 fastq.gz 1.7 GB Report
EGAF00005578531 fastq.gz 1.8 GB Report
EGAF00005578532 fastq.gz 5.8 GB Report
EGAF00005578533 fastq.gz 5.9 GB Report
EGAF00005578534 fastq.gz 7.5 GB Report
EGAF00005578535 fastq.gz 7.8 GB Report
EGAF00005578536 fastq.gz 14.1 GB Report
EGAF00005578537 fastq.gz 14.7 GB Report
EGAF00005578538 fastq.gz 2.8 GB Report
EGAF00005578539 fastq.gz 2.9 GB Report
EGAF00005578540 fastq.gz 2.9 GB Report
EGAF00005578541 fastq.gz 3.0 GB Report
EGAF00005578542 fastq.gz 3.5 GB Report
EGAF00005578543 fastq.gz 3.6 GB Report
EGAF00005578544 fastq.gz 1.4 GB Report
EGAF00005578545 fastq.gz 1.5 GB Report
EGAF00005578546 fastq.gz 2.6 GB Report
EGAF00005578547 fastq.gz 2.7 GB Report
EGAF00005578548 fastq.gz 3.5 GB Report
EGAF00005578549 fastq.gz 3.6 GB Report
EGAF00005578550 fastq.gz 4.0 GB Report
EGAF00005578551 fastq.gz 4.1 GB Report
EGAF00005578552 fastq.gz 1.3 GB Report
EGAF00005578553 fastq.gz 1.4 GB Report
EGAF00005578554 fastq.gz 4.8 GB Report
EGAF00005578555 fastq.gz 5.0 GB Report
EGAF00005578556 fastq.gz 3.7 GB Report
EGAF00005578557 fastq.gz 3.8 GB Report
EGAF00005578558 fastq.gz 2.3 GB Report
EGAF00005578559 fastq.gz 2.4 GB Report
EGAF00005578560 fastq.gz 1.8 GB Report
EGAF00005578561 fastq.gz 1.9 GB Report
EGAF00005578562 fastq.gz 9.3 GB Report
EGAF00005578563 fastq.gz 9.7 GB Report
EGAF00005578564 fastq.gz 3.7 GB Report
EGAF00005578565 fastq.gz 3.8 GB Report
EGAF00005578566 fastq.gz 3.7 GB Report
EGAF00005578567 fastq.gz 3.9 GB Report
EGAF00005578568 fastq.gz 8.7 GB Report
EGAF00005578569 fastq.gz 9.1 GB Report
EGAF00005578570 fastq.gz 1.7 GB Report
EGAF00005578571 fastq.gz 1.7 GB Report
EGAF00005578572 fastq.gz 12.1 GB Report
EGAF00005578573 fastq.gz 12.6 GB Report
EGAF00005578574 fastq.gz 1.4 GB Report
EGAF00005578575 fastq.gz 1.4 GB Report
EGAF00005578576 fastq.gz 5.9 GB Report
EGAF00005578577 fastq.gz 6.2 GB Report
EGAF00005578578 fastq.gz 2.6 GB Report
EGAF00005578579 fastq.gz 2.7 GB Report
EGAF00005578580 fastq.gz 1.2 GB Report
EGAF00005578581 fastq.gz 1.3 GB Report
EGAF00005578582 fastq.gz 4.3 GB Report
EGAF00005578583 fastq.gz 4.4 GB Report
EGAF00005578584 fastq.gz 4.9 GB Report
EGAF00005578585 fastq.gz 5.1 GB Report
EGAF00005578586 fastq.gz 3.3 GB Report
EGAF00005578587 fastq.gz 3.4 GB Report
EGAF00005578588 fastq.gz 6.4 GB Report
EGAF00005578589 fastq.gz 6.6 GB Report
EGAF00005578590 fastq.gz 4.0 GB Report
EGAF00005578591 fastq.gz 4.1 GB Report
EGAF00005578592 fastq.gz 8.6 GB Report
EGAF00005578593 fastq.gz 8.9 GB Report
EGAF00005578594 fastq.gz 3.3 GB Report
EGAF00005578595 fastq.gz 3.4 GB Report
EGAF00005578596 fastq.gz 1.6 GB Report
EGAF00005578597 fastq.gz 1.7 GB Report
EGAF00005578598 fastq.gz 1.3 GB Report
EGAF00005578599 fastq.gz 1.4 GB Report
EGAF00005578600 fastq.gz 4.4 GB Report
EGAF00005578601 fastq.gz 4.5 GB Report
EGAF00005578602 fastq.gz 3.6 GB Report
EGAF00005578603 fastq.gz 3.8 GB Report
EGAF00005578604 fastq.gz 2.1 GB Report
EGAF00005578605 fastq.gz 2.2 GB Report
EGAF00005578606 fastq.gz 2.2 GB Report
EGAF00005578607 fastq.gz 2.3 GB Report
EGAF00005578608 fastq.gz 8.7 GB Report
EGAF00005578609 fastq.gz 9.0 GB Report
EGAF00005578610 fastq.gz 5.0 GB Report
EGAF00005578611 fastq.gz 5.1 GB Report
EGAF00005578612 fastq.gz 1.4 GB Report
EGAF00005578613 fastq.gz 1.4 GB Report
EGAF00005578614 fastq.gz 8.5 GB Report
EGAF00005578615 fastq.gz 8.8 GB Report
EGAF00005578616 fastq.gz 3.8 GB Report
EGAF00005578617 fastq.gz 4.0 GB Report
EGAF00005578618 fastq.gz 5.6 GB Report
EGAF00005578619 fastq.gz 5.9 GB Report
EGAF00005578620 fastq.gz 7.6 GB Report
EGAF00005578621 fastq.gz 7.9 GB Report
EGAF00005578622 fastq.gz 11.8 GB Report
EGAF00005578623 fastq.gz 12.3 GB Report
EGAF00005578624 fastq.gz 12.5 GB Report
EGAF00005578625 fastq.gz 13.0 GB Report
EGAF00005578626 fastq.gz 5.6 GB Report
EGAF00005578627 fastq.gz 5.9 GB Report
EGAF00005578628 fastq.gz 17.5 GB Report
EGAF00005578629 fastq.gz 18.2 GB Report
EGAF00005578630 fastq.gz 9.8 GB Report
EGAF00005578631 fastq.gz 10.1 GB Report
EGAF00005578632 fastq.gz 2.9 GB Report
EGAF00005578633 fastq.gz 3.0 GB Report
EGAF00005578634 fastq.gz 7.7 GB Report
EGAF00005578635 fastq.gz 8.0 GB Report
EGAF00005578636 fastq.gz 4.2 GB Report
EGAF00005578637 fastq.gz 4.3 GB Report
EGAF00005578638 fastq.gz 5.6 GB Report
EGAF00005578639 fastq.gz 5.8 GB Report
EGAF00005578640 fastq.gz 7.5 GB Report
EGAF00005578641 fastq.gz 7.8 GB Report
EGAF00005578642 fastq.gz 4.1 GB Report
EGAF00005578643 fastq.gz 4.2 GB Report
EGAF00005578644 fastq.gz 5.5 GB Report
EGAF00005578645 fastq.gz 5.8 GB Report
EGAF00005578646 fastq.gz 4.0 GB Report
EGAF00005578647 fastq.gz 4.1 GB Report
EGAF00005578648 fastq.gz 6.7 GB Report
EGAF00005578649 fastq.gz 6.9 GB Report
EGAF00005578650 fastq.gz 1.1 GB Report
EGAF00005578651 fastq.gz 1.1 GB Report
EGAF00005578652 fastq.gz 1.7 GB Report
EGAF00005578653 fastq.gz 1.8 GB Report
EGAF00005578654 fastq.gz 2.4 GB Report
EGAF00005578655 fastq.gz 2.5 GB Report
EGAF00005578656 fastq.gz 4.2 GB Report
EGAF00005578657 fastq.gz 4.3 GB Report
EGAF00005578658 fastq.gz 10.1 GB Report
EGAF00005578659 fastq.gz 10.5 GB Report
EGAF00005578660 fastq.gz 4.6 GB Report
EGAF00005578661 fastq.gz 4.7 GB Report
EGAF00005578662 fastq.gz 2.8 GB Report
EGAF00005578663 fastq.gz 3.0 GB Report
EGAF00005578664 fastq.gz 2.3 GB Report
EGAF00005578665 fastq.gz 2.4 GB Report
EGAF00005578666 fastq.gz 3.0 GB Report
EGAF00005578667 fastq.gz 3.1 GB Report
EGAF00005578668 fastq.gz 2.0 GB Report
EGAF00005578669 fastq.gz 2.1 GB Report
EGAF00005578670 fastq.gz 6.2 GB Report
EGAF00005578671 fastq.gz 6.4 GB Report
EGAF00005578672 fastq.gz 3.0 GB Report
EGAF00005578673 fastq.gz 3.1 GB Report
EGAF00005578674 fastq.gz 8.0 GB Report
EGAF00005578675 fastq.gz 8.3 GB Report
EGAF00005578676 fastq.gz 2.3 GB Report
EGAF00005578677 fastq.gz 2.4 GB Report
EGAF00005578678 fastq.gz 3.7 GB Report
EGAF00005578679 fastq.gz 3.8 GB Report
EGAF00005578680 fastq.gz 9.5 GB Report
EGAF00005578681 fastq.gz 9.9 GB Report
EGAF00005578682 fastq.gz 2.3 GB Report
EGAF00005578683 fastq.gz 2.4 GB Report
EGAF00005578684 fastq.gz 1.0 GB Report
EGAF00005578685 fastq.gz 1.0 GB Report
EGAF00005578686 fastq.gz 4.4 GB Report
EGAF00005578687 fastq.gz 4.6 GB Report
EGAF00005578688 fastq.gz 4.5 GB Report
EGAF00005578689 fastq.gz 4.7 GB Report
EGAF00005578690 fastq.gz 1.9 GB Report
EGAF00005578691 fastq.gz 2.0 GB Report
EGAF00005578692 fastq.gz 1.5 GB Report
EGAF00005578693 fastq.gz 1.6 GB Report
EGAF00005578694 fastq.gz 2.0 GB Report
EGAF00005578695 fastq.gz 2.1 GB Report
EGAF00005578696 fastq.gz 1.3 GB Report
EGAF00005578697 fastq.gz 1.4 GB Report
EGAF00005578698 fastq.gz 4.0 GB Report
EGAF00005578699 fastq.gz 4.2 GB Report
EGAF00005578700 fastq.gz 1.8 GB Report
EGAF00005578701 fastq.gz 1.8 GB Report
EGAF00005578702 fastq.gz 1.3 GB Report
EGAF00005578703 fastq.gz 1.4 GB Report
EGAF00005578704 fastq.gz 3.9 GB Report
EGAF00005578705 fastq.gz 4.0 GB Report
EGAF00005578706 fastq.gz 4.4 GB Report
EGAF00005578707 fastq.gz 4.6 GB Report
EGAF00005578708 fastq.gz 1.5 GB Report
EGAF00005578709 fastq.gz 1.6 GB Report
EGAF00005578710 fastq.gz 4.0 GB Report
EGAF00005578711 fastq.gz 4.1 GB Report
EGAF00005578712 fastq.gz 2.2 GB Report
EGAF00005578713 fastq.gz 2.3 GB Report
EGAF00005578714 fastq.gz 2.7 GB Report
EGAF00005578715 fastq.gz 2.8 GB Report
EGAF00005578716 fastq.gz 3.3 GB Report
EGAF00005578717 fastq.gz 3.5 GB Report
EGAF00005578718 fastq.gz 1.5 GB Report
EGAF00005578719 fastq.gz 1.6 GB Report
EGAF00005578720 fastq.gz 5.3 GB Report
EGAF00005578721 fastq.gz 5.5 GB Report
EGAF00005578722 fastq.gz 1.3 GB Report
EGAF00005578723 fastq.gz 1.3 GB Report
EGAF00005578724 fastq.gz 4.4 GB Report
EGAF00005578725 fastq.gz 4.5 GB Report
EGAF00005578726 fastq.gz 2.0 GB Report
EGAF00005578727 fastq.gz 2.1 GB Report
EGAF00005578728 fastq.gz 6.4 GB Report
EGAF00005578729 fastq.gz 6.6 GB Report
EGAF00005578730 fastq.gz 7.4 GB Report
EGAF00005578731 fastq.gz 7.7 GB Report
EGAF00005578732 fastq.gz 2.5 GB Report
EGAF00005578733 fastq.gz 2.6 GB Report
EGAF00005578734 fastq.gz 950.0 MB Report
EGAF00005578735 fastq.gz 994.1 MB Report
EGAF00005578736 fastq.gz 3.2 GB Report
EGAF00005578737 fastq.gz 3.4 GB Report
EGAF00005578738 fastq.gz 11.3 GB Report
EGAF00005578739 fastq.gz 11.6 GB Report
EGAF00005578740 fastq.gz 7.9 GB Report
EGAF00005578741 fastq.gz 8.3 GB Report
EGAF00005578742 fastq.gz 1.4 GB Report
EGAF00005578743 fastq.gz 1.4 GB Report
EGAF00005578744 fastq.gz 4.2 GB Report
EGAF00005578745 fastq.gz 4.3 GB Report
EGAF00005578746 fastq.gz 2.1 GB Report
EGAF00005578747 fastq.gz 2.1 GB Report
EGAF00005578748 fastq.gz 1.7 GB Report
EGAF00005578749 fastq.gz 1.7 GB Report
EGAF00005578750 fastq.gz 3.7 GB Report
EGAF00005578751 fastq.gz 3.9 GB Report
EGAF00005578752 fastq.gz 1.2 GB Report
EGAF00005578753 fastq.gz 1.2 GB Report
EGAF00005578754 fastq.gz 3.4 GB Report
EGAF00005578755 fastq.gz 3.5 GB Report
EGAF00005578756 fastq.gz 4.5 GB Report
EGAF00005578757 fastq.gz 4.6 GB Report
EGAF00005578758 fastq.gz 2.9 GB Report
EGAF00005578759 fastq.gz 3.0 GB Report
EGAF00005578760 fastq.gz 3.4 GB Report
EGAF00005578761 fastq.gz 3.5 GB Report
258 Files (1.1 TB)