Dataset

RNA-seq data from 27 glioblastoma samples

Dataset ID Technology Samples
EGAD00001008362 NextSeq 550 27

Dataset Description

27 Fresh frozen tissue specimens were crushed by mortar and pestle, homogenized using the QIAShredder kit (Qiagen), and genomic DNA and total RNA were extracted using the AllPrep DNA/RNA Mini kit (Qiagen), according to the manufacturer’s instructions. RNA libraries were synthesized using 200 ng of total RNA using the Ilumina TruSeq Stranded RNA LT Sample Prep Kit (Illumina), and subsequently sequenced on the NextSeq550 platform to a read depth of 80 million clusters and 160 million paired end reads (75 bp X 75 bp) using V2 chemistry.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Diamandis Lab - Princes Margaret Research Institute
Contact person: Alberto Leon
Email: alberto [dot] leon [at] uhnresearch [dot] ca
More details: EGAC00001002419

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