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Shallow whole genome sequencing and targeted capture sequencing data of PCNSL and PTL primary and relapse pairs

Shallow whole genome sequencing for copy number analysis and targeted capture sequencing data for translocation and mutation anslysis of paired primary and relapse PCNSL and PTL samples

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005755 Other
EGAS00001005833 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005722377 bam 2.3 GB
EGAF00005722378 bam 3.1 GB
EGAF00005722379 bam 2.2 GB
EGAF00005722380 bam 2.6 GB
EGAF00005722381 bam 2.9 GB
EGAF00005722382 bam 2.2 GB
EGAF00005722383 bam 2.0 GB
EGAF00005722384 bam 2.1 GB
EGAF00005722385 bam 2.6 GB
EGAF00005722386 bam 4.5 GB
EGAF00005722387 bam 3.3 GB
EGAF00005722388 bam 1.4 GB
EGAF00005722389 bam 2.4 GB
EGAF00005722390 bam 2.4 GB
EGAF00005722391 bam 2.6 GB
EGAF00005722392 bam 2.4 GB
EGAF00005722393 bam 3.1 GB
EGAF00005722394 bam 3.2 GB
EGAF00005722395 bam 1.7 GB
EGAF00005722396 bam 2.5 GB
EGAF00005722397 bam 2.6 GB
EGAF00005722398 bam 3.2 GB
EGAF00005722399 bam 2.3 GB
EGAF00005722400 bam 2.0 GB
EGAF00005722401 bam 1.9 GB
EGAF00005722402 bam 1.8 GB
EGAF00005722403 bam 2.7 GB
EGAF00005722404 bam 2.0 GB
EGAF00005722405 bam 2.6 GB
EGAF00005722406 bam 3.1 GB
EGAF00005722407 bam 885.3 MB
EGAF00005722408 bam 1.6 GB
EGAF00005722409 bam 2.3 GB
EGAF00005722410 bam 2.4 GB
EGAF00005722411 bam 1.6 GB
EGAF00005722412 bam 2.5 GB
EGAF00005722413 bam 1.8 GB
EGAF00005722414 bam 1.5 GB
EGAF00005722415 bam 1.5 GB
EGAF00005722416 bam 1.8 GB
EGAF00005722417 bam 643.1 MB
EGAF00005722418 bam 1.7 GB
EGAF00005722419 bam 1.8 GB
EGAF00005722420 bam 3.7 GB
EGAF00005722421 bam 2.7 GB
EGAF00005722422 bam 2.5 GB
EGAF00005722423 bam 1.8 GB
EGAF00005722424 bam 2.2 GB
EGAF00005722425 bam 1.5 GB
EGAF00005722426 bam 1.8 GB
EGAF00005722427 bam 1.8 GB
EGAF00005722428 bam 2.1 GB
EGAF00005722429 bam 2.2 GB
EGAF00005722430 bam 2.1 GB
EGAF00005722431 bam 2.2 GB
EGAF00005722432 bam 1.7 GB
EGAF00005722433 bam 3.9 GB
EGAF00005722434 bam 2.9 GB
EGAF00005722435 bam 2.5 GB
EGAF00005722436 bam 1.9 GB
EGAF00005722437 bam 3.6 GB
EGAF00005722438 bam 1.3 GB
EGAF00005722439 bam 1.7 GB
EGAF00005722440 bam 2.0 GB
EGAF00005722441 bam 2.0 GB
EGAF00005722442 bam 1.5 GB
EGAF00005722443 bam 1.8 GB
EGAF00005722444 bam 1.1 GB
EGAF00005722445 bam 558.5 MB
EGAF00005722446 bam 1.9 GB
EGAF00005722447 bam 1.6 GB
EGAF00005722448 bam 2.6 GB
EGAF00005722449 bam 1.6 GB
EGAF00005722450 bam 2.4 GB
EGAF00005722451 bam 2.0 GB
EGAF00005722452 bam 1.3 GB
EGAF00005722453 bam 2.5 GB
EGAF00005722454 bam 2.2 GB
EGAF00005722455 bam 2.1 GB
EGAF00005722456 bam 2.0 GB
EGAF00005722457 bam 1.8 GB
EGAF00005722458 bam 2.0 GB
EGAF00005722459 bam 1.9 GB
EGAF00005722460 bam 2.3 GB
EGAF00005722461 bam 1.8 GB
EGAF00005722462 bam 2.4 GB
EGAF00005722463 bam 3.1 GB
EGAF00005722464 bam 1.7 GB
EGAF00005722465 bam 1.7 GB
EGAF00005722466 bam 1.8 GB
EGAF00005722467 bam 3.1 GB
EGAF00005722468 bam 2.1 GB
EGAF00005722469 bam 2.6 GB
EGAF00005722470 bam 3.4 GB
EGAF00005722471 bam 1.8 GB
EGAF00005722472 bam 2.3 GB
EGAF00005722473 bam 1.6 GB
EGAF00005722474 bam 2.3 GB
EGAF00005722475 bam 2.8 GB
EGAF00005722476 bam 3.9 GB
EGAF00005722477 bam 1.8 GB
EGAF00005722478 bam 1.9 GB
EGAF00005722479 bam 1.9 GB
EGAF00005722480 bam 1.3 GB
EGAF00005722481 bam 1.6 GB
EGAF00005722482 bam 2.0 GB
EGAF00005722483 bam 2.8 GB
EGAF00005722484 bam 1.7 GB
EGAF00005722485 bam 1.5 GB
EGAF00005722486 bam 4.4 GB
EGAF00005722487 bam 2.2 GB
EGAF00005722488 bam 4.6 GB
EGAF00005722489 bam 2.0 GB
EGAF00005722490 bam 1.5 GB
EGAF00005722491 bam 1.2 GB
EGAF00005722492 bam 3.6 GB
EGAF00005722493 bam 2.1 GB
EGAF00005722494 bam 1.4 GB
EGAF00005722495 bam 1.8 GB
EGAF00005722496 bam 2.0 GB
EGAF00005722497 bam 1.2 GB
EGAF00005722498 bam 1.9 GB
EGAF00005722499 bam 1.1 GB
EGAF00005722500 bam 2.8 GB
EGAF00005722501 bam 2.8 GB
EGAF00005722502 bam 1.3 GB
EGAF00005722503 bam 2.2 GB
EGAF00005722504 bam 2.1 GB
EGAF00005722505 bam 2.3 GB
EGAF00005722506 bam 3.1 GB
EGAF00005722507 bam 973.4 MB
EGAF00005722508 bam 849.8 MB
EGAF00005722509 bam 1.8 GB
EGAF00005722510 bam 2.0 GB
EGAF00005722511 bam 2.0 GB
EGAF00005722512 bam 644.6 MB
EGAF00005722513 bam 1.7 GB
EGAF00005722514 bam 1.6 GB
EGAF00005722515 bam 2.1 GB
EGAF00005722516 bam 963.9 MB
EGAF00005722517 bam 2.1 GB
EGAF00005722518 bam 2.3 GB
EGAF00005722519 bam 2.4 GB
EGAF00005722520 bam 2.9 GB
EGAF00005722521 bam 2.4 GB
EGAF00005722522 bam 2.1 GB
EGAF00005722523 bam 2.6 GB
EGAF00005722524 bam 2.0 GB
EGAF00005722525 bam 1.8 GB
EGAF00005722526 bam 3.1 GB
EGAF00005722527 bam 1.4 GB
EGAF00005722528 bam 2.4 GB
EGAF00005722529 bam 1.3 GB
EGAF00005722530 bam 458.6 MB
EGAF00005722531 bam 1.7 GB
EGAF00005722532 bam 723.2 MB
EGAF00005722533 bam 1.2 GB
EGAF00005722534 bam 2.1 GB
EGAF00005722535 bam 870.9 MB
EGAF00005722536 bam 1.0 GB
EGAF00005722537 bam 2.3 GB
EGAF00005722538 bam 2.1 GB
EGAF00005722539 bam 1.5 GB
EGAF00005722540 bam 292.4 MB
EGAF00005722541 bam 2.4 GB
EGAF00005722542 bam 821.2 MB
EGAF00005722543 bam 2.4 GB
EGAF00005722544 bam 3.7 GB
EGAF00005722545 bam 767.6 MB
EGAF00005722546 bam 597.0 MB
EGAF00005722547 bam 2.1 GB
EGAF00005722548 bam 3.9 GB
EGAF00005722549 bam 2.7 GB
EGAF00005722550 bam 3.0 GB
EGAF00005722551 bam 4.3 GB
EGAF00005722552 bam 664.1 MB
EGAF00005722553 bam 2.1 GB
EGAF00005722554 bam 1.2 GB
EGAF00005722555 bam 2.1 GB
EGAF00005722556 bam 2.6 GB
EGAF00005722557 bam 3.2 GB
EGAF00005722558 bam 2.0 GB
EGAF00005722559 bam 2.4 GB
EGAF00005722560 bam 1.2 GB
EGAF00005722561 bam 1.1 GB
EGAF00005722562 bam 1.4 GB
EGAF00005722563 bam 2.0 GB
EGAF00005722564 bam 1.4 GB
EGAF00005722565 bam 2.5 GB
EGAF00005722566 bam 2.1 GB
EGAF00005722567 bam 2.7 GB
EGAF00005722568 bam 3.2 GB
EGAF00005722569 bam 3.9 GB
EGAF00005722570 bam 3.8 GB
EGAF00005722571 bam 2.1 GB
EGAF00005722572 bam 1.7 GB
EGAF00005722573 bam 3.3 GB
EGAF00005722574 bam 854.8 MB
EGAF00005722575 bam 4.5 GB
EGAF00005722576 bam 2.8 GB
EGAF00005722577 bam 2.2 GB
EGAF00005722578 bam 3.7 GB
EGAF00005722579 bam 2.3 GB
EGAF00005722580 bam 4.0 GB
EGAF00005722581 bam 2.5 GB
EGAF00005722582 bam 2.8 GB
EGAF00005722583 bam 1.4 GB
EGAF00005722584 bam 1.6 GB
EGAF00005722585 bam 887.4 MB
EGAF00005722586 bam 770.2 MB
EGAF00005722587 bam 1.5 GB
EGAF00005722588 bam 814.1 MB
EGAF00005722589 bam 1.3 GB
EGAF00005722590 bam 3.2 GB
EGAF00005722591 bam 2.1 GB
EGAF00005722592 bam 1.1 GB
EGAF00005722593 bam 6.7 GB
EGAF00005722594 bam 369.1 MB
EGAF00005722595 bam 2.2 GB
EGAF00005722596 bam 2.8 GB
EGAF00005722597 bam 3.1 GB
EGAF00005722598 bam 2.5 GB
EGAF00005722599 bam 1.6 GB
EGAF00005722600 bam 1.6 GB
EGAF00005722601 bam 1.1 GB
EGAF00005722602 bam 2.2 GB
EGAF00005722603 bam 1.6 GB
EGAF00005722604 bam 1.8 GB
EGAF00005722605 bam 1.8 GB
EGAF00005722606 bam 2.2 GB
EGAF00005722607 bam 2.3 GB
EGAF00005722608 bam 2.2 GB
EGAF00005722609 bam 7.1 GB
EGAF00005722610 bam 1.0 GB
EGAF00005722611 bam 4.2 GB
EGAF00005722612 bam 3.0 GB
EGAF00005722613 bam 4.2 GB
EGAF00005722614 bam 538.2 MB
EGAF00005722615 bam 2.2 GB
EGAF00005722616 bam 3.3 GB
EGAF00005722617 bam 1.9 GB
EGAF00005722618 bam 2.0 GB
EGAF00005722619 bam 2.1 GB
EGAF00005722620 bam 1.1 GB
EGAF00005722621 bam 2.4 GB
EGAF00005722622 bam 1.9 GB
EGAF00005722623 bam 5.8 GB
EGAF00005722624 bam 2.2 GB
EGAF00005722625 bam 2.2 GB
EGAF00005722626 bam 3.0 GB
EGAF00005722627 bam 3.4 GB
EGAF00005722628 bam 2.3 GB
EGAF00005722629 bam 777.2 MB
EGAF00005722630 bam 2.3 GB
EGAF00005722631 bam 2.6 GB
EGAF00005722632 bam 1.3 GB
EGAF00005722633 bam 2.7 GB
EGAF00005722634 bam 2.8 GB
EGAF00005722635 bam 2.3 GB
EGAF00005722636 bam 2.7 GB
EGAF00005722637 bam 2.0 GB
EGAF00005722638 bam 2.7 GB
EGAF00005722639 bam 2.8 GB
EGAF00005722640 bam 4.3 GB
EGAF00005722641 bam 2.0 GB
EGAF00005722642 bam 2.6 GB
EGAF00005722643 bam 2.6 GB
EGAF00005722644 bam 3.0 GB
EGAF00005722645 bam 2.2 GB
EGAF00005727063 bam 498.7 MB
EGAF00005727064 bam 797.9 MB
EGAF00005727065 bam 370.5 MB
EGAF00005727066 bam 452.3 MB
EGAF00005727067 bam 677.7 MB
EGAF00005727068 bam 562.9 MB
EGAF00005727069 bam 571.4 MB
EGAF00005727070 bam 491.3 MB
EGAF00005727071 bam 619.3 MB
EGAF00005727072 bam 293.6 MB
EGAF00005727073 bam 536.9 MB
EGAF00005727074 bam 490.1 MB
EGAF00005727075 bam 578.2 MB
EGAF00005727076 bam 543.9 MB
EGAF00005727077 bam 340.3 MB
EGAF00005727078 bam 471.7 MB
EGAF00005727079 bam 699.4 MB
EGAF00005727080 bam 551.8 MB
EGAF00005727081 bam 538.1 MB
EGAF00005727082 bam 423.9 MB
EGAF00005727083 bam 550.7 MB
EGAF00005727084 bam 786.0 MB
EGAF00005727085 bam 487.5 MB
EGAF00005727086 bam 838.1 MB
EGAF00005727087 bam 793.0 MB
EGAF00005727088 bam 503.1 MB
EGAF00005727089 bam 521.3 MB
EGAF00005727090 bam 399.9 MB
EGAF00005727091 bam 295.3 MB
EGAF00005727092 bam 371.9 MB
EGAF00005727093 bam 570.6 MB
EGAF00005727094 bam 513.6 MB
EGAF00005727095 bam 506.5 MB
EGAF00005727096 bam 488.2 MB
EGAF00005727097 bam 527.1 MB
EGAF00005727098 bam 595.7 MB
EGAF00005727099 bam 487.1 MB
EGAF00005727100 bam 615.5 MB
EGAF00005727101 bam 354.0 MB
EGAF00005727102 bam 513.2 MB
EGAF00005727103 bam 541.0 MB
EGAF00005727104 bam 514.2 MB
EGAF00005727105 bam 393.3 MB
EGAF00005727106 bam 423.9 MB
EGAF00005727107 bam 371.6 MB
EGAF00005727108 bam 526.3 MB
EGAF00005727109 bam 603.9 MB
EGAF00005727110 bam 510.8 MB
EGAF00005727111 bam 431.9 MB
EGAF00005727112 bam 243.7 MB
EGAF00005727113 bam 538.3 MB
EGAF00005727114 bam 402.2 MB
EGAF00005727115 bam 407.1 MB
EGAF00005727116 bam 398.3 MB
EGAF00005727117 bam 467.9 MB
EGAF00005727118 bam 542.5 MB
EGAF00005727119 bam 353.4 MB
EGAF00005727120 bam 332.9 MB
EGAF00005727121 bam 173.4 MB
EGAF00005727122 bam 153.6 MB
EGAF00005727123 bam 566.5 MB
EGAF00005727124 bam 524.1 MB
EGAF00005727125 bam 487.7 MB
EGAF00005727126 bam 735.5 MB
EGAF00005727127 bam 583.1 MB
EGAF00005727128 bam 156.4 MB
335 Files (624.7 GB)