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sWGS of core biopsies from localized breast cancer patients

Paired end shallow whole genome sequencing (sWGS) data for the identification of genomewide somatic copy number alterations (SCNA) and the estimation of tumor fractions.

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Liquid Biopsy Policy

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the studies, conducted from the Liquid Biopsy group at the D&R Institute of Human Genetics (Medical University of Graz, Austria) which have been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005798 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005724133 fastq.gz 470.1 MB
EGAF00005724134 fastq.gz 498.1 MB
EGAF00005724135 fastq.gz 288.9 MB
EGAF00005724136 fastq.gz 301.8 MB
EGAF00005724137 fastq.gz 384.2 MB
EGAF00005724138 fastq.gz 393.4 MB
EGAF00005724139 fastq.gz 357.7 MB
EGAF00005724140 fastq.gz 370.9 MB
EGAF00005724141 fastq.gz 422.0 MB
EGAF00005724142 fastq.gz 440.6 MB
EGAF00005724143 fastq.gz 371.0 MB
EGAF00005724144 fastq.gz 386.3 MB
EGAF00005724145 fastq.gz 428.1 MB
EGAF00005724146 fastq.gz 434.1 MB
EGAF00005724147 fastq.gz 516.0 MB
EGAF00005724148 fastq.gz 537.8 MB
EGAF00005724149 fastq.gz 258.4 MB
EGAF00005724150 fastq.gz 265.5 MB
EGAF00005724151 fastq.gz 338.2 MB
EGAF00005724152 fastq.gz 351.0 MB
EGAF00005724153 fastq.gz 390.8 MB
EGAF00005724154 fastq.gz 396.9 MB
EGAF00005724155 fastq.gz 493.6 MB
EGAF00005724156 fastq.gz 520.9 MB
EGAF00005724157 fastq.gz 396.7 MB
EGAF00005724158 fastq.gz 407.0 MB
EGAF00005724159 fastq.gz 551.7 MB
EGAF00005724160 fastq.gz 570.0 MB
EGAF00005724161 fastq.gz 433.1 MB
EGAF00005724162 fastq.gz 446.2 MB
EGAF00005724163 fastq.gz 325.9 MB
EGAF00005724164 fastq.gz 338.8 MB
EGAF00005724165 fastq.gz 354.1 MB
EGAF00005724166 fastq.gz 364.1 MB
EGAF00005724167 fastq.gz 329.8 MB
EGAF00005724168 fastq.gz 342.8 MB
EGAF00005724169 fastq.gz 326.9 MB
EGAF00005724170 fastq.gz 337.0 MB
EGAF00005724171 fastq.gz 247.4 MB
EGAF00005724172 fastq.gz 256.1 MB
EGAF00005724173 fastq.gz 369.8 MB
EGAF00005724174 fastq.gz 381.0 MB
EGAF00005724175 fastq.gz 645.3 MB
EGAF00005724176 fastq.gz 688.9 MB
EGAF00005724177 fastq.gz 288.5 MB
EGAF00005724178 fastq.gz 300.4 MB
EGAF00005724179 fastq.gz 343.7 MB
EGAF00005724180 fastq.gz 359.0 MB
EGAF00005724181 fastq.gz 369.4 MB
EGAF00005724182 fastq.gz 381.7 MB
EGAF00005724183 fastq.gz 281.9 MB
EGAF00005724184 fastq.gz 289.9 MB
EGAF00005724185 fastq.gz 316.6 MB
EGAF00005724186 fastq.gz 327.1 MB
EGAF00005724187 fastq.gz 510.2 MB
EGAF00005724188 fastq.gz 522.3 MB
EGAF00005724189 fastq.gz 305.5 MB
EGAF00005724190 fastq.gz 315.8 MB
EGAF00005724191 fastq.gz 510.6 MB
EGAF00005724192 fastq.gz 529.6 MB
EGAF00005724193 fastq.gz 356.1 MB
EGAF00005724194 fastq.gz 371.8 MB
EGAF00005724195 fastq.gz 336.6 MB
EGAF00005724196 fastq.gz 345.9 MB
EGAF00005724197 fastq.gz 309.7 MB
EGAF00005724198 fastq.gz 320.8 MB
EGAF00005724199 fastq.gz 310.6 MB
EGAF00005724200 fastq.gz 320.9 MB
EGAF00005724201 fastq.gz 232.3 MB
EGAF00005724202 fastq.gz 238.3 MB
EGAF00005724203 fastq.gz 282.0 MB
EGAF00005724204 fastq.gz 293.0 MB
EGAF00005724205 fastq.gz 337.7 MB
EGAF00005724206 fastq.gz 353.0 MB
EGAF00005724207 fastq.gz 327.7 MB
EGAF00005724208 fastq.gz 336.1 MB
EGAF00005724209 fastq.gz 215.9 MB
EGAF00005724210 fastq.gz 225.3 MB
EGAF00005724211 fastq.gz 346.7 MB
EGAF00005724212 fastq.gz 357.0 MB
EGAF00005724213 fastq.gz 577.4 MB
EGAF00005724214 fastq.gz 587.4 MB
EGAF00005724215 fastq.gz 510.1 MB
EGAF00005724216 fastq.gz 540.3 MB
EGAF00005724217 fastq.gz 308.0 MB
EGAF00005724218 fastq.gz 317.5 MB
EGAF00005724219 fastq.gz 441.1 MB
EGAF00005724220 fastq.gz 455.6 MB
EGAF00005724221 fastq.gz 259.3 MB
EGAF00005724222 fastq.gz 268.1 MB
EGAF00005724223 fastq.gz 348.8 MB
EGAF00005724224 fastq.gz 358.3 MB
EGAF00005724225 fastq.gz 298.1 MB
EGAF00005724226 fastq.gz 309.2 MB
EGAF00005724227 fastq.gz 354.7 MB
EGAF00005724228 fastq.gz 366.1 MB
EGAF00005724229 fastq.gz 275.1 MB
EGAF00005724230 fastq.gz 281.7 MB
EGAF00005724231 fastq.gz 357.6 MB
EGAF00005724232 fastq.gz 373.6 MB
EGAF00005724233 fastq.gz 420.0 MB
EGAF00005724234 fastq.gz 429.6 MB
EGAF00005724235 fastq.gz 478.1 MB
EGAF00005724236 fastq.gz 491.6 MB
EGAF00005724237 fastq.gz 450.5 MB
EGAF00005724238 fastq.gz 474.5 MB
EGAF00005724239 fastq.gz 405.1 MB
EGAF00005724240 fastq.gz 421.8 MB
EGAF00005724241 fastq.gz 301.7 MB
EGAF00005724242 fastq.gz 312.6 MB
EGAF00005724243 fastq.gz 384.1 MB
EGAF00005724244 fastq.gz 402.8 MB
EGAF00005724245 fastq.gz 351.0 MB
EGAF00005724246 fastq.gz 362.2 MB
EGAF00005724247 fastq.gz 346.4 MB
EGAF00005724248 fastq.gz 360.2 MB
EGAF00005724249 fastq.gz 366.9 MB
EGAF00005724250 fastq.gz 372.9 MB
EGAF00005724251 fastq.gz 404.2 MB
EGAF00005724252 fastq.gz 418.8 MB
EGAF00005724253 fastq.gz 254.1 MB
EGAF00005724254 fastq.gz 263.7 MB
EGAF00005724255 fastq.gz 261.1 MB
EGAF00005724256 fastq.gz 270.2 MB
EGAF00005724257 fastq.gz 360.0 MB
EGAF00005724258 fastq.gz 370.2 MB
EGAF00005724259 fastq.gz 282.8 MB
EGAF00005724260 fastq.gz 293.1 MB
EGAF00005724261 fastq.gz 380.5 MB
EGAF00005724262 fastq.gz 391.6 MB
EGAF00005724263 fastq.gz 460.6 MB
EGAF00005724264 fastq.gz 492.9 MB
EGAF00005724265 fastq.gz 366.3 MB
EGAF00005724266 fastq.gz 377.8 MB
EGAF00005724267 fastq.gz 355.1 MB
EGAF00005724268 fastq.gz 369.2 MB
EGAF00005724269 fastq.gz 428.3 MB
EGAF00005724270 fastq.gz 438.9 MB
EGAF00005724271 fastq.gz 375.3 MB
EGAF00005724272 fastq.gz 393.2 MB
EGAF00005724273 fastq.gz 353.1 MB
EGAF00005724274 fastq.gz 365.1 MB
EGAF00005724275 fastq.gz 223.2 MB
EGAF00005724276 fastq.gz 231.1 MB
EGAF00005724277 fastq.gz 288.8 MB
EGAF00005724278 fastq.gz 298.4 MB
EGAF00005724279 fastq.gz 459.7 MB
EGAF00005724280 fastq.gz 475.6 MB
EGAF00005724281 fastq.gz 388.0 MB
EGAF00005724282 fastq.gz 395.2 MB
EGAF00005724283 fastq.gz 272.6 MB
EGAF00005724284 fastq.gz 279.8 MB
EGAF00005724285 fastq.gz 470.5 MB
EGAF00005724286 fastq.gz 503.5 MB
EGAF00005724287 fastq.gz 346.7 MB
EGAF00005724288 fastq.gz 355.8 MB
EGAF00005724289 fastq.gz 354.6 MB
EGAF00005724290 fastq.gz 362.3 MB
EGAF00005724291 fastq.gz 452.6 MB
EGAF00005724292 fastq.gz 475.7 MB
EGAF00005724293 fastq.gz 363.2 MB
EGAF00005724294 fastq.gz 381.0 MB
EGAF00005724295 fastq.gz 311.6 MB
EGAF00005724296 fastq.gz 322.5 MB
EGAF00005724297 fastq.gz 362.5 MB
EGAF00005724298 fastq.gz 368.9 MB
EGAF00005724299 fastq.gz 320.1 MB
EGAF00005724300 fastq.gz 328.1 MB
EGAF00005724301 fastq.gz 480.7 MB
EGAF00005724302 fastq.gz 512.4 MB
EGAF00005724303 fastq.gz 671.2 MB
EGAF00005724304 fastq.gz 679.5 MB
EGAF00005724305 fastq.gz 389.9 MB
EGAF00005724306 fastq.gz 406.6 MB
EGAF00005724307 fastq.gz 387.7 MB
EGAF00005724308 fastq.gz 396.1 MB
EGAF00005724309 fastq.gz 372.8 MB
EGAF00005724310 fastq.gz 384.1 MB
EGAF00005724311 fastq.gz 309.5 MB
EGAF00005724312 fastq.gz 326.5 MB
EGAF00005724313 fastq.gz 389.1 MB
EGAF00005724314 fastq.gz 412.3 MB
EGAF00005724315 fastq.gz 366.7 MB
EGAF00005724316 fastq.gz 384.8 MB
EGAF00005724317 fastq.gz 454.0 MB
EGAF00005724318 fastq.gz 480.6 MB
EGAF00005724319 fastq.gz 593.4 MB
EGAF00005724320 fastq.gz 602.3 MB
EGAF00005724321 fastq.gz 499.6 MB
EGAF00005724322 fastq.gz 526.0 MB
EGAF00005724323 fastq.gz 396.2 MB
EGAF00005724324 fastq.gz 423.5 MB
EGAF00005724325 fastq.gz 367.9 MB
EGAF00005724326 fastq.gz 380.0 MB
EGAF00005724327 fastq.gz 354.3 MB
EGAF00005724328 fastq.gz 363.6 MB
EGAF00005724329 fastq.gz 376.7 MB
EGAF00005724330 fastq.gz 394.9 MB
EGAF00005724331 fastq.gz 410.3 MB
EGAF00005724332 fastq.gz 436.1 MB
EGAF00005724333 fastq.gz 362.6 MB
EGAF00005724334 fastq.gz 384.8 MB
EGAF00005724335 fastq.gz 418.8 MB
EGAF00005724336 fastq.gz 440.5 MB
EGAF00005724337 fastq.gz 353.9 MB
EGAF00005724338 fastq.gz 371.6 MB
EGAF00005724339 fastq.gz 292.0 MB
EGAF00005724340 fastq.gz 304.9 MB
EGAF00005724341 fastq.gz 230.2 MB
EGAF00005724342 fastq.gz 238.8 MB
EGAF00005724343 fastq.gz 258.4 MB
EGAF00005724344 fastq.gz 268.2 MB
EGAF00005724345 fastq.gz 367.4 MB
EGAF00005724346 fastq.gz 377.1 MB
EGAF00005724347 fastq.gz 322.7 MB
EGAF00005724348 fastq.gz 336.6 MB
EGAF00005724349 fastq.gz 307.8 MB
EGAF00005724350 fastq.gz 318.5 MB
EGAF00005724351 fastq.gz 319.8 MB
EGAF00005724352 fastq.gz 331.6 MB
EGAF00005724353 fastq.gz 375.1 MB
EGAF00005724354 fastq.gz 389.4 MB
EGAF00005724355 fastq.gz 262.9 MB
EGAF00005724356 fastq.gz 271.9 MB
EGAF00005724357 fastq.gz 241.8 MB
EGAF00005724358 fastq.gz 252.5 MB
EGAF00005724359 fastq.gz 381.9 MB
EGAF00005724360 fastq.gz 406.9 MB
EGAF00005724361 fastq.gz 449.3 MB
EGAF00005724362 fastq.gz 477.0 MB
EGAF00005724363 fastq.gz 253.4 MB
EGAF00005724364 fastq.gz 262.6 MB
EGAF00005724365 fastq.gz 374.4 MB
EGAF00005724366 fastq.gz 387.5 MB
EGAF00005724367 fastq.gz 248.2 MB
EGAF00005724368 fastq.gz 259.9 MB
EGAF00005724369 fastq.gz 264.8 MB
EGAF00005724370 fastq.gz 278.0 MB
EGAF00005724371 fastq.gz 392.3 MB
EGAF00005724372 fastq.gz 404.2 MB
EGAF00005724373 fastq.gz 460.9 MB
EGAF00005724374 fastq.gz 464.3 MB
EGAF00005724375 fastq.gz 417.1 MB
EGAF00005724376 fastq.gz 430.5 MB
EGAF00005724377 fastq.gz 232.9 MB
EGAF00005724378 fastq.gz 242.5 MB
EGAF00005724379 fastq.gz 351.5 MB
EGAF00005724380 fastq.gz 361.1 MB
EGAF00005724381 fastq.gz 279.2 MB
EGAF00005724382 fastq.gz 297.3 MB
EGAF00005724383 fastq.gz 401.3 MB
EGAF00005724384 fastq.gz 413.4 MB
EGAF00005724385 fastq.gz 295.0 MB
EGAF00005724386 fastq.gz 306.8 MB
EGAF00005724387 fastq.gz 322.9 MB
EGAF00005724388 fastq.gz 333.8 MB
EGAF00005724389 fastq.gz 316.5 MB
EGAF00005724390 fastq.gz 329.6 MB
EGAF00005724391 fastq.gz 340.5 MB
EGAF00005724392 fastq.gz 350.9 MB
EGAF00005724393 fastq.gz 376.8 MB
EGAF00005724394 fastq.gz 397.9 MB
EGAF00005724395 fastq.gz 291.3 MB
EGAF00005724396 fastq.gz 309.3 MB
EGAF00005724397 fastq.gz 327.3 MB
EGAF00005724398 fastq.gz 337.1 MB
EGAF00005724399 fastq.gz 365.6 MB
EGAF00005724400 fastq.gz 373.0 MB
EGAF00005724401 fastq.gz 344.6 MB
EGAF00005724402 fastq.gz 367.5 MB
EGAF00005724403 fastq.gz 431.7 MB
EGAF00005724404 fastq.gz 441.7 MB
EGAF00005724405 fastq.gz 448.2 MB
EGAF00005724406 fastq.gz 458.4 MB
EGAF00005724407 fastq.gz 630.0 MB
EGAF00005724408 fastq.gz 690.1 MB
EGAF00005724409 fastq.gz 330.5 MB
EGAF00005724410 fastq.gz 348.2 MB
EGAF00005724411 fastq.gz 551.7 MB
EGAF00005724412 fastq.gz 556.5 MB
EGAF00005724413 fastq.gz 325.4 MB
EGAF00005724414 fastq.gz 334.3 MB
EGAF00005724415 fastq.gz 428.9 MB
EGAF00005724416 fastq.gz 451.4 MB
EGAF00005724417 fastq.gz 567.3 MB
EGAF00005724418 fastq.gz 582.9 MB
EGAF00005724419 fastq.gz 327.5 MB
EGAF00005724420 fastq.gz 335.8 MB
EGAF00005724421 fastq.gz 286.7 MB
EGAF00005724422 fastq.gz 296.3 MB
EGAF00005724423 fastq.gz 334.7 MB
EGAF00005724424 fastq.gz 345.6 MB
EGAF00005724425 fastq.gz 330.7 MB
EGAF00005724426 fastq.gz 351.1 MB
EGAF00005724427 fastq.gz 363.0 MB
EGAF00005724428 fastq.gz 379.1 MB
EGAF00005724429 fastq.gz 281.2 MB
EGAF00005724430 fastq.gz 300.5 MB
EGAF00005724431 fastq.gz 586.8 MB
EGAF00005724432 fastq.gz 597.5 MB
EGAF00005724433 fastq.gz 276.1 MB
EGAF00005724434 fastq.gz 292.0 MB
EGAF00005724435 fastq.gz 328.8 MB
EGAF00005724436 fastq.gz 337.7 MB
EGAF00005724437 fastq.gz 303.6 MB
EGAF00005724438 fastq.gz 317.7 MB
EGAF00005724439 fastq.gz 1.0 GB
EGAF00005724440 fastq.gz 1.0 GB
EGAF00005724441 fastq.gz 368.1 MB
EGAF00005724442 fastq.gz 377.9 MB
EGAF00005724443 fastq.gz 407.4 MB
EGAF00005724444 fastq.gz 413.3 MB
EGAF00005724445 fastq.gz 321.6 MB
EGAF00005724446 fastq.gz 337.0 MB
EGAF00005724447 fastq.gz 408.8 MB
EGAF00005724448 fastq.gz 430.1 MB
EGAF00005724449 fastq.gz 440.3 MB
EGAF00005724450 fastq.gz 451.3 MB
EGAF00005724451 fastq.gz 279.0 MB
EGAF00005724452 fastq.gz 294.4 MB
EGAF00005724453 fastq.gz 377.7 MB
EGAF00005724454 fastq.gz 391.5 MB
EGAF00005724455 fastq.gz 339.3 MB
EGAF00005724456 fastq.gz 357.2 MB
EGAF00005724457 fastq.gz 390.4 MB
EGAF00005724458 fastq.gz 408.6 MB
EGAF00005724459 fastq.gz 419.6 MB
EGAF00005724460 fastq.gz 427.2 MB
EGAF00005724461 fastq.gz 389.6 MB
EGAF00005724462 fastq.gz 409.7 MB
EGAF00005724463 fastq.gz 382.1 MB
EGAF00005724464 fastq.gz 400.6 MB
EGAF00005724465 fastq.gz 410.7 MB
EGAF00005724466 fastq.gz 419.5 MB
EGAF00005724467 fastq.gz 331.6 MB
EGAF00005724468 fastq.gz 339.8 MB
EGAF00005724469 fastq.gz 253.1 MB
EGAF00005724470 fastq.gz 264.5 MB
EGAF00005724471 fastq.gz 335.5 MB
EGAF00005724472 fastq.gz 351.3 MB
EGAF00005724473 fastq.gz 261.3 MB
EGAF00005724474 fastq.gz 272.5 MB
EGAF00005724475 fastq.gz 308.5 MB
EGAF00005724476 fastq.gz 324.7 MB
EGAF00005724477 fastq.gz 277.9 MB
EGAF00005724478 fastq.gz 287.6 MB
EGAF00005724479 fastq.gz 223.3 MB
EGAF00005724480 fastq.gz 234.5 MB
EGAF00005724481 fastq.gz 258.4 MB
EGAF00005724482 fastq.gz 270.0 MB
EGAF00005724483 fastq.gz 667.0 MB
EGAF00005724484 fastq.gz 683.3 MB
EGAF00005724485 fastq.gz 231.6 MB
EGAF00005724486 fastq.gz 243.0 MB
EGAF00005724487 fastq.gz 539.8 MB
EGAF00005724488 fastq.gz 562.2 MB
EGAF00005724489 fastq.gz 477.9 MB
EGAF00005724490 fastq.gz 508.0 MB
EGAF00005724491 fastq.gz 409.9 MB
EGAF00005724492 fastq.gz 416.1 MB
EGAF00005724493 fastq.gz 414.6 MB
EGAF00005724494 fastq.gz 434.3 MB
EGAF00005724495 fastq.gz 296.4 MB
EGAF00005724496 fastq.gz 308.3 MB
EGAF00005724497 fastq.gz 426.7 MB
EGAF00005724498 fastq.gz 438.8 MB
EGAF00005724499 fastq.gz 515.1 MB
EGAF00005724500 fastq.gz 526.3 MB
EGAF00005724501 fastq.gz 624.9 MB
EGAF00005724502 fastq.gz 659.3 MB
370 Files (141.0 GB)