About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-nuclei gene-expression analysis of pheochromocytoma and paraganglioma links tumor subtypes with tumor microenvironment

This dataset contains raw sequencing reads in FASTQ format from single-nuclei (30 samples) and bulk tissue (40 samples) transcriptome sequencing of pheochromocytoma and paraganglioma tissue specimens. Additionally, data from single-nuclei sequencing of two normal adrenal medulla specimens is included.

Request Access

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form Email the completed form to: UMCCR-DAC@unimelb.edu.au The following form is to be used to submit an expression of interest to access data under the purview of the UMCCR-DAC and does not represent a binding data access agreement. REQUESTOR INFORMATION Graduate research student requestors must include their supervisor or a senior researcher as the Principal Investigator. Please use institutional email addresses only. Requestor Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Principal Investigator (if different to the Requestor) Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Authorised Institutional Representative Name: Job Title/Position: Institution: Telephone: Email: Postal Address: DATA REQUESTED Data description Include the EGA study and dataset accession number(s), other data identifier(s) and/or the name of the publication describing the data. Data type Is the requested data identifiable? (Whole-genome sequencing data is not considered identifiable.) ☐ Yes ☐ No PROJECT DETAILS Project description Describe the project in which the data will be used (500 words maximum). This should include specific details of the aims and what you plan to do with the data. Members of the project team requiring access to the data. Include the following information: Name Job title/position Institution Email Supervisor Feasibility Describe previous experience in this field of research and/or in similar projects by the requestor, principal investigator and other members of the project team. ETHICS APPROVAL Does this project require approval from a Human Research Ethics Committee (HREC) or comparable committee? ☐ Yes ☐ No If yes, name the HREC from which approval has been requested or obtained and attach relevant documentation (ethics application and/or approval documentation). If no, please explain why ethics approval is not required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005861 Other
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005732289 fastq.gz 6.1 GB Report
EGAF00005732290 fastq.gz 6.1 GB Report
EGAF00005732291 fastq.gz 4.6 GB Report
EGAF00005732292 fastq.gz 4.7 GB Report
EGAF00005732293 fastq.gz 4.4 GB Report
EGAF00005732294 fastq.gz 4.4 GB Report
EGAF00005732295 fastq.gz 4.7 GB Report
EGAF00005732296 fastq.gz 4.7 GB Report
EGAF00005732297 fastq.gz 4.0 GB Report
EGAF00005732298 fastq.gz 4.0 GB Report
EGAF00005732299 fastq.gz 3.4 GB Report
EGAF00005732300 fastq.gz 3.5 GB Report
EGAF00005732301 fastq.gz 5.8 GB Report
EGAF00005732302 fastq.gz 5.9 GB Report
EGAF00005732303 fastq.gz 3.7 GB Report
EGAF00005732304 fastq.gz 3.7 GB Report
EGAF00005732305 fastq.gz 4.3 GB Report
EGAF00005732306 fastq.gz 4.3 GB Report
EGAF00005732307 fastq.gz 5.8 GB Report
EGAF00005732308 fastq.gz 5.9 GB Report
EGAF00005732309 fastq.gz 1.5 GB Report
EGAF00005732310 fastq.gz 1.5 GB Report
EGAF00005732311 fastq.gz 1.7 GB Report
EGAF00005732312 fastq.gz 1.7 GB Report
EGAF00005732313 fastq.gz 3.8 GB Report
EGAF00005732314 fastq.gz 3.8 GB Report
EGAF00005732315 fastq.gz 3.7 GB Report
EGAF00005732316 fastq.gz 3.8 GB Report
EGAF00005732317 fastq.gz 7.3 GB Report
EGAF00005732318 fastq.gz 7.3 GB Report
EGAF00005732319 fastq.gz 3.9 GB Report
EGAF00005732320 fastq.gz 3.9 GB Report
EGAF00005732321 fastq.gz 4.2 GB Report
EGAF00005732322 fastq.gz 4.3 GB Report
EGAF00005732323 fastq.gz 6.8 GB Report
EGAF00005732324 fastq.gz 6.7 GB Report
EGAF00005732325 fastq.gz 4.4 GB Report
EGAF00005732326 fastq.gz 4.4 GB Report
EGAF00005732327 fastq.gz 4.3 GB Report
EGAF00005732328 fastq.gz 4.4 GB Report
EGAF00005732329 fastq.gz 4.8 GB Report
EGAF00005732330 fastq.gz 4.8 GB Report
EGAF00005732331 fastq.gz 4.0 GB Report
EGAF00005732332 fastq.gz 4.1 GB Report
EGAF00005732333 fastq.gz 4.7 GB Report
EGAF00005732334 fastq.gz 4.7 GB Report
EGAF00005732335 fastq.gz 3.3 GB Report
EGAF00005732336 fastq.gz 3.4 GB Report
EGAF00005732337 fastq.gz 3.8 GB Report
EGAF00005732338 fastq.gz 3.8 GB Report
EGAF00005732339 fastq.gz 3.5 GB Report
EGAF00005732340 fastq.gz 3.5 GB Report
EGAF00005732341 fastq.gz 7.1 GB Report
EGAF00005732342 fastq.gz 7.1 GB Report
EGAF00005732343 fastq.gz 3.1 GB Report
EGAF00005732344 fastq.gz 3.1 GB Report
EGAF00005732345 fastq.gz 5.1 GB Report
EGAF00005732346 fastq.gz 5.1 GB Report
EGAF00005732347 fastq.gz 4.1 GB Report
EGAF00005732348 fastq.gz 4.1 GB Report
EGAF00005732349 fastq.gz 4.4 GB Report
EGAF00005732350 fastq.gz 4.5 GB Report
EGAF00005732351 fastq.gz 4.1 GB Report
EGAF00005732352 fastq.gz 4.2 GB Report
EGAF00005732353 fastq.gz 4.5 GB Report
EGAF00005732354 fastq.gz 4.5 GB Report
EGAF00005732355 fastq.gz 5.4 GB Report
EGAF00005732356 fastq.gz 5.5 GB Report
EGAF00005732357 fastq.gz 3.8 GB Report
EGAF00005732358 fastq.gz 3.8 GB Report
EGAF00005732359 fastq.gz 3.7 GB Report
EGAF00005732360 fastq.gz 3.7 GB Report
EGAF00005732361 fastq.gz 4.0 GB Report
EGAF00005732362 fastq.gz 4.0 GB Report
EGAF00005732363 fastq.gz 4.0 GB Report
EGAF00005732364 fastq.gz 4.0 GB Report
EGAF00005732365 fastq.gz 2.7 GB Report
EGAF00005732366 fastq.gz 2.7 GB Report
EGAF00005732367 fastq.gz 4.5 GB Report
EGAF00005732368 fastq.gz 4.5 GB Report
EGAF00005732369 fastq.gz 10.9 GB Report
EGAF00005732370 fastq.gz 11.3 GB Report
EGAF00005732371 fastq.gz 13.4 GB Report
EGAF00005732372 fastq.gz 13.9 GB Report
EGAF00005732379 fastq.gz 11.9 GB Report
EGAF00005732380 fastq.gz 13.5 GB Report
EGAF00005732381 fastq.gz 18.6 GB Report
EGAF00005732382 fastq.gz 19.5 GB Report
EGAF00005732383 fastq.gz 29.0 GB Report
EGAF00005732384 fastq.gz 30.6 GB Report
EGAF00005732385 fastq.gz 9.4 GB Report
EGAF00005732386 fastq.gz 9.9 GB Report
EGAF00005732387 fastq.gz 14.4 GB Report
EGAF00005732388 fastq.gz 16.4 GB Report
EGAF00005732389 fastq.gz 9.9 GB Report
EGAF00005732390 fastq.gz 11.4 GB Report
EGAF00005732391 fastq.gz 18.9 GB Report
EGAF00005732392 fastq.gz 20.0 GB Report
EGAF00005732393 fastq.gz 21.1 GB Report
EGAF00005732394 fastq.gz 22.2 GB Report
EGAF00005732395 fastq.gz 33.5 GB Report
EGAF00005732396 fastq.gz 35.1 GB Report
EGAF00005732397 fastq.gz 19.6 GB Report
EGAF00005732398 fastq.gz 22.5 GB Report
EGAF00005732399 fastq.gz 34.5 GB Report
EGAF00005732400 fastq.gz 36.2 GB Report
EGAF00005732401 fastq.gz 16.2 GB Report
EGAF00005732402 fastq.gz 17.0 GB Report
EGAF00005732403 fastq.gz 17.3 GB Report
EGAF00005732404 fastq.gz 18.3 GB Report
EGAF00005732405 fastq.gz 21.6 GB Report
EGAF00005732406 fastq.gz 24.6 GB Report
EGAF00005732407 fastq.gz 18.9 GB Report
EGAF00005732408 fastq.gz 21.6 GB Report
EGAF00005732409 fastq.gz 17.5 GB Report
EGAF00005732410 fastq.gz 19.8 GB Report
EGAF00005732411 fastq.gz 13.4 GB Report
EGAF00005732412 fastq.gz 13.9 GB Report
EGAF00005732413 fastq.gz 13.7 GB Report
EGAF00005732414 fastq.gz 14.1 GB Report
EGAF00005732415 fastq.gz 16.1 GB Report
EGAF00005732416 fastq.gz 16.9 GB Report
EGAF00005732417 fastq.gz 10.7 GB Report
EGAF00005732418 fastq.gz 12.4 GB Report
EGAF00005732419 fastq.gz 23.9 GB Report
EGAF00005732420 fastq.gz 26.9 GB Report
EGAF00005732421 fastq.gz 19.6 GB Report
EGAF00005732422 fastq.gz 22.5 GB Report
EGAF00005732423 fastq.gz 21.8 GB Report
EGAF00005732424 fastq.gz 22.9 GB Report
EGAF00005732425 fastq.gz 20.1 GB Report
EGAF00005732426 fastq.gz 23.0 GB Report
EGAF00005732429 fastq.gz 17.4 GB Report
EGAF00005732430 fastq.gz 18.3 GB Report
EGAF00005732431 fastq.gz 18.4 GB Report
EGAF00005732432 fastq.gz 19.5 GB Report
EGAF00008431255 fastq.gz 7.7 GB Report
EGAF00008431257 fastq.gz 7.6 GB Report
EGAF00008431259 fastq.gz 4.3 GB Report
EGAF00008431261 fastq.gz 4.3 GB Report
EGAF00008476970 fastq.gz 40.4 GB
EGAF00008476976 fastq.gz 37.8 GB
EGAF00008476978 fastq.gz 44.0 GB
EGAF00008476981 fastq.gz 40.2 GB
EGAF00008476995 fastq.gz 38.0 GB
EGAF00008477017 fastq.gz 48.0 GB
EGAF00008477029 fastq.gz 45.1 GB
EGAF00008477077 fastq.gz 41.6 GB
148 Files (1.8 TB)