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Single-nuclei gene-expression analysis of pheochromocytoma and paraganglioma links tumor subtypes with tumor microenvironment

This dataset contains raw sequencing reads in FASTQ format from single-nuclei (30 samples) and bulk tissue (40 samples) transcriptome sequencing of pheochromocytoma and paraganglioma tissue specimens. Additionally, data from single-nuclei sequencing of two normal adrenal medulla specimens is included.

Request Access

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form Email the completed form to: UMCCR-DAC@unimelb.edu.au The following form is to be used to submit an expression of interest to access data under the purview of the UMCCR-DAC and does not represent a binding data access agreement. REQUESTOR INFORMATION Graduate research student requestors must include their supervisor or a senior researcher as the Principal Investigator. Please use institutional email addresses only. Requestor Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Principal Investigator (if different to the Requestor) Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Authorised Institutional Representative Name: Job Title/Position: Institution: Telephone: Email: Postal Address: DATA REQUESTED Data description Include the EGA study and dataset accession number(s), other data identifier(s) and/or the name of the publication describing the data. Data type Is the requested data identifiable? (Whole-genome sequencing data is not considered identifiable.) ☐ Yes ☐ No PROJECT DETAILS Project description Describe the project in which the data will be used (500 words maximum). This should include specific details of the aims and what you plan to do with the data. Members of the project team requiring access to the data. Include the following information: Name Job title/position Institution Email Supervisor Feasibility Describe previous experience in this field of research and/or in similar projects by the requestor, principal investigator and other members of the project team. ETHICS APPROVAL Does this project require approval from a Human Research Ethics Committee (HREC) or comparable committee? ☐ Yes ☐ No If yes, name the HREC from which approval has been requested or obtained and attach relevant documentation (ethics application and/or approval documentation). If no, please explain why ethics approval is not required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005861 Other
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Added note about mismatched sorting of FASTQ files for some samples
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005732289 fastq.gz 6.1 GB
EGAF00005732290 fastq.gz 6.1 GB
EGAF00005732291 fastq.gz 4.6 GB
EGAF00005732292 fastq.gz 4.7 GB
EGAF00005732293 fastq.gz 4.4 GB
EGAF00005732294 fastq.gz 4.4 GB
EGAF00005732295 fastq.gz 4.7 GB
EGAF00005732296 fastq.gz 4.7 GB
EGAF00005732297 fastq.gz 4.0 GB
EGAF00005732298 fastq.gz 4.0 GB
EGAF00005732299 fastq.gz 3.4 GB
EGAF00005732300 fastq.gz 3.5 GB
EGAF00005732301 fastq.gz 5.8 GB
EGAF00005732302 fastq.gz 5.9 GB
EGAF00005732303 fastq.gz 3.7 GB
EGAF00005732304 fastq.gz 3.7 GB
EGAF00005732305 fastq.gz 4.3 GB
EGAF00005732306 fastq.gz 4.3 GB
EGAF00005732307 fastq.gz 5.8 GB
EGAF00005732308 fastq.gz 5.9 GB
EGAF00005732309 fastq.gz 1.5 GB
EGAF00005732310 fastq.gz 1.5 GB
EGAF00005732311 fastq.gz 1.7 GB
EGAF00005732312 fastq.gz 1.7 GB
EGAF00005732313 fastq.gz 3.8 GB
EGAF00005732314 fastq.gz 3.8 GB
EGAF00005732315 fastq.gz 3.7 GB
EGAF00005732316 fastq.gz 3.8 GB
EGAF00005732317 fastq.gz 7.3 GB
EGAF00005732318 fastq.gz 7.3 GB
EGAF00005732319 fastq.gz 3.9 GB
EGAF00005732320 fastq.gz 3.9 GB
EGAF00005732321 fastq.gz 4.2 GB
EGAF00005732322 fastq.gz 4.3 GB
EGAF00005732323 fastq.gz 6.8 GB
EGAF00005732324 fastq.gz 6.7 GB
EGAF00005732325 fastq.gz 4.4 GB
EGAF00005732326 fastq.gz 4.4 GB
EGAF00005732327 fastq.gz 4.3 GB
EGAF00005732328 fastq.gz 4.4 GB
EGAF00005732329 fastq.gz 4.8 GB
EGAF00005732330 fastq.gz 4.8 GB
EGAF00005732331 fastq.gz 4.0 GB
EGAF00005732332 fastq.gz 4.1 GB
EGAF00005732333 fastq.gz 4.7 GB
EGAF00005732334 fastq.gz 4.7 GB
EGAF00005732335 fastq.gz 3.3 GB
EGAF00005732336 fastq.gz 3.4 GB
EGAF00005732337 fastq.gz 3.8 GB
EGAF00005732338 fastq.gz 3.8 GB
EGAF00005732339 fastq.gz 3.5 GB
EGAF00005732340 fastq.gz 3.5 GB
EGAF00005732341 fastq.gz 7.1 GB
EGAF00005732342 fastq.gz 7.1 GB
EGAF00005732343 fastq.gz 3.1 GB
EGAF00005732344 fastq.gz 3.1 GB
EGAF00005732345 fastq.gz 5.1 GB
EGAF00005732346 fastq.gz 5.1 GB
EGAF00005732347 fastq.gz 4.1 GB
EGAF00005732348 fastq.gz 4.1 GB
EGAF00005732349 fastq.gz 4.4 GB
EGAF00005732350 fastq.gz 4.5 GB
EGAF00005732351 fastq.gz 4.1 GB
EGAF00005732352 fastq.gz 4.2 GB
EGAF00005732353 fastq.gz 4.5 GB
EGAF00005732354 fastq.gz 4.5 GB
EGAF00005732355 fastq.gz 5.4 GB
EGAF00005732356 fastq.gz 5.5 GB
EGAF00005732357 fastq.gz 3.8 GB
EGAF00005732358 fastq.gz 3.8 GB
EGAF00005732359 fastq.gz 3.7 GB
EGAF00005732360 fastq.gz 3.7 GB
EGAF00005732361 fastq.gz 4.0 GB
EGAF00005732362 fastq.gz 4.0 GB
EGAF00005732363 fastq.gz 4.0 GB
EGAF00005732364 fastq.gz 4.0 GB
EGAF00005732365 fastq.gz 2.7 GB
EGAF00005732366 fastq.gz 2.7 GB
EGAF00005732367 fastq.gz 4.5 GB
EGAF00005732368 fastq.gz 4.5 GB
EGAF00005732369 fastq.gz 10.9 GB
EGAF00005732370 fastq.gz 11.3 GB
EGAF00005732371 fastq.gz 13.4 GB
EGAF00005732372 fastq.gz 13.9 GB
EGAF00005732379 fastq.gz 11.9 GB
EGAF00005732380 fastq.gz 13.5 GB
EGAF00005732381 fastq.gz 18.6 GB
EGAF00005732382 fastq.gz 19.5 GB
EGAF00005732383 fastq.gz 29.0 GB
EGAF00005732384 fastq.gz 30.6 GB
EGAF00005732385 fastq.gz 9.4 GB
EGAF00005732386 fastq.gz 9.9 GB
EGAF00005732387 fastq.gz 14.4 GB
EGAF00005732388 fastq.gz 16.4 GB
EGAF00005732389 fastq.gz 9.9 GB
EGAF00005732390 fastq.gz 11.4 GB
EGAF00005732391 fastq.gz 18.9 GB
EGAF00005732392 fastq.gz 20.0 GB
EGAF00005732393 fastq.gz 21.1 GB
EGAF00005732394 fastq.gz 22.2 GB
EGAF00005732395 fastq.gz 33.5 GB
EGAF00005732396 fastq.gz 35.1 GB
EGAF00005732397 fastq.gz 19.6 GB
EGAF00005732398 fastq.gz 22.5 GB
EGAF00005732399 fastq.gz 34.5 GB
EGAF00005732400 fastq.gz 36.2 GB
EGAF00005732401 fastq.gz 16.2 GB
EGAF00005732402 fastq.gz 17.0 GB
EGAF00005732403 fastq.gz 17.3 GB
EGAF00005732404 fastq.gz 18.3 GB
EGAF00005732405 fastq.gz 21.6 GB
EGAF00005732406 fastq.gz 24.6 GB
EGAF00005732407 fastq.gz 18.9 GB
EGAF00005732408 fastq.gz 21.6 GB
EGAF00005732409 fastq.gz 17.5 GB
EGAF00005732410 fastq.gz 19.8 GB
EGAF00005732411 fastq.gz 13.4 GB
EGAF00005732412 fastq.gz 13.9 GB
EGAF00005732413 fastq.gz 13.7 GB
EGAF00005732414 fastq.gz 14.1 GB
EGAF00005732415 fastq.gz 16.1 GB
EGAF00005732416 fastq.gz 16.9 GB
EGAF00005732417 fastq.gz 10.7 GB
EGAF00005732418 fastq.gz 12.4 GB
EGAF00005732419 fastq.gz 23.9 GB
EGAF00005732420 fastq.gz 26.9 GB
EGAF00005732421 fastq.gz 19.6 GB
EGAF00005732422 fastq.gz 22.5 GB
EGAF00005732423 fastq.gz 21.8 GB
EGAF00005732424 fastq.gz 22.9 GB
EGAF00005732425 fastq.gz 20.1 GB
EGAF00005732426 fastq.gz 23.0 GB
EGAF00005732429 fastq.gz 17.4 GB
EGAF00005732430 fastq.gz 18.3 GB
EGAF00005732431 fastq.gz 18.4 GB
EGAF00005732432 fastq.gz 19.5 GB
EGAF00008431255 fastq.gz 7.7 GB
EGAF00008431257 fastq.gz 7.6 GB
EGAF00008431259 fastq.gz 4.3 GB
EGAF00008431261 fastq.gz 4.3 GB
EGAF00008476970 fastq.gz 40.3 GB
EGAF00008476976 fastq.gz 37.8 GB
EGAF00008476978 fastq.gz 43.9 GB
EGAF00008476981 fastq.gz 40.2 GB
EGAF00008476995 fastq.gz 38.0 GB
EGAF00008477017 fastq.gz 48.0 GB
EGAF00008477029 fastq.gz 45.1 GB
EGAF00008477077 fastq.gz 41.6 GB
148 Files (1.8 TB)