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Single-cell RNA-seq of patient-derived organoids across three generations

Single-cell RNA-seq of first-, second-, and third-generation patient-derived organoids. Obtained using the 10X Genomics single-cell 3' expression solution (v3 chemistry). First- and second-generation PDOs from one patient and first-, second-, and third-generation PDOs from three additional patients.

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BCCA (BCGSC) data policy

This document refers to the data set which has been submitted to the European Genome Archive (EGA) for the controlled access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the British Columbia Cancer Agency Branch herein represented by the Technology Development Office of the Provincial Health Services Authority. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by the Technology Development Office - contact our general email address

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005227 Other
ID File Type Size Located in
EGAF00005742153 fastq.gz 4.0 GB
EGAF00005742154 fastq.gz 3.4 GB
EGAF00005742155 fastq.gz 3.8 GB
EGAF00005742156 fastq.gz 3.4 GB
EGAF00005742157 fastq.gz 3.5 GB
EGAF00005742158 fastq.gz 3.1 GB
EGAF00005742159 fastq.gz 3.9 GB
EGAF00005742160 fastq.gz 3.4 GB
EGAF00005742161 fastq.gz 4.0 GB
EGAF00005742162 fastq.gz 3.5 GB
EGAF00005742163 fastq.gz 3.9 GB
EGAF00005742164 fastq.gz 3.4 GB
EGAF00005742165 fastq.gz 3.9 GB
EGAF00005742166 fastq.gz 3.3 GB
EGAF00005742167 fastq.gz 3.8 GB
EGAF00005742168 fastq.gz 3.2 GB
EGAF00005742169 fastq.gz 3.4 GB
EGAF00005742170 fastq.gz 2.9 GB
EGAF00005742171 fastq.gz 3.6 GB
EGAF00005742172 fastq.gz 3.2 GB
EGAF00005742173 fastq.gz 3.7 GB
EGAF00005742174 fastq.gz 3.3 GB
EGAF00005742175 fastq.gz 3.8 GB
EGAF00005742176 fastq.gz 3.3 GB
EGAF00005742177 fastq.gz 3.6 GB
EGAF00005742178 fastq.gz 3.2 GB
EGAF00005742179 fastq.gz 3.3 GB
EGAF00005742180 fastq.gz 3.0 GB
EGAF00005742181 fastq.gz 3.7 GB
EGAF00005742182 fastq.gz 3.2 GB
EGAF00005742183 fastq.gz 3.8 GB
EGAF00005742184 fastq.gz 3.4 GB
EGAF00005742185 fastq.gz 3.7 GB
EGAF00005742186 fastq.gz 3.3 GB
EGAF00005742187 fastq.gz 3.6 GB
EGAF00005742188 fastq.gz 3.1 GB
EGAF00005742189 fastq.gz 3.6 GB
EGAF00005742190 fastq.gz 3.0 GB
EGAF00005742191 fastq.gz 3.2 GB
EGAF00005742192 fastq.gz 2.8 GB
EGAF00005742193 fastq.gz 3.4 GB
EGAF00005742194 fastq.gz 3.1 GB
EGAF00005742195 fastq.gz 3.6 GB
EGAF00005742196 fastq.gz 3.2 GB
EGAF00005742197 fastq.gz 3.9 GB
EGAF00005742198 fastq.gz 3.4 GB
EGAF00005742199 fastq.gz 3.7 GB
EGAF00005742200 fastq.gz 3.4 GB
EGAF00005742201 fastq.gz 3.4 GB
EGAF00005742202 fastq.gz 3.1 GB
EGAF00005742203 fastq.gz 3.8 GB
EGAF00005742204 fastq.gz 3.3 GB
EGAF00005742205 fastq.gz 3.9 GB
EGAF00005742206 fastq.gz 3.5 GB
EGAF00005742207 fastq.gz 3.8 GB
EGAF00005742208 fastq.gz 3.4 GB
EGAF00005742209 fastq.gz 3.7 GB
EGAF00005742210 fastq.gz 3.2 GB
EGAF00005742211 fastq.gz 3.7 GB
EGAF00005742212 fastq.gz 3.1 GB
EGAF00005742213 fastq.gz 3.3 GB
EGAF00005742214 fastq.gz 2.9 GB
EGAF00005742215 fastq.gz 3.5 GB
EGAF00005742216 fastq.gz 3.2 GB
EGAF00005742217 fastq.gz 3.7 GB
EGAF00005742218 fastq.gz 3.3 GB
EGAF00005742219 fastq.gz 3.6 GB
EGAF00005742220 fastq.gz 3.1 GB
EGAF00005742221 fastq.gz 3.5 GB
EGAF00005742222 fastq.gz 3.1 GB
EGAF00005742223 fastq.gz 3.2 GB
EGAF00005742224 fastq.gz 2.9 GB
EGAF00005742225 fastq.gz 3.6 GB
EGAF00005742226 fastq.gz 3.1 GB
EGAF00005742227 fastq.gz 3.6 GB
EGAF00005742228 fastq.gz 3.2 GB
EGAF00005742229 fastq.gz 3.5 GB
EGAF00005742230 fastq.gz 3.1 GB
EGAF00005742231 fastq.gz 3.5 GB
EGAF00005742232 fastq.gz 3.0 GB
EGAF00005742233 fastq.gz 3.4 GB
EGAF00005742234 fastq.gz 2.9 GB
EGAF00005742235 fastq.gz 3.1 GB
EGAF00005742236 fastq.gz 2.7 GB
EGAF00005742237 fastq.gz 3.3 GB
EGAF00005742238 fastq.gz 2.9 GB
EGAF00005742239 fastq.gz 3.4 GB
EGAF00005742240 fastq.gz 3.0 GB
88 Files (298.6 GB)