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Second primary vs. primary bowel malignancies

Data about copy number aberrations was obtained from primary CRC (n=90). DNA was collected from second primary CRC (in HL survivors, n = 39), and primary SBA (n=14). For second primary SBA (in HL and TC survivors), DNA was isolated for molecular analyses (n=7). Copy number aberrations were evaluated after low-coverage whole genome sequencing.

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Data Access Policy of NKI-AvL TGO

Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005940 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005774356 fastq.gz 634.2 MB
EGAF00005774357 fastq.gz 453.4 MB
EGAF00005774358 fastq.gz 177.8 MB
EGAF00005774359 fastq.gz 177.3 MB
EGAF00005774360 fastq.gz 211.7 MB
EGAF00005774361 fastq.gz 210.6 MB
EGAF00005774362 fastq.gz 188.9 MB
EGAF00005774363 fastq.gz 188.1 MB
EGAF00005774364 fastq.gz 127.9 MB
EGAF00005774365 fastq.gz 127.5 MB
EGAF00005774366 fastq.gz 209.6 MB
EGAF00005774367 fastq.gz 209.2 MB
EGAF00005774368 fastq.gz 229.9 MB
EGAF00005774369 fastq.gz 229.0 MB
EGAF00005774370 fastq.gz 187.7 MB
EGAF00005774371 fastq.gz 186.9 MB
EGAF00005774372 fastq.gz 141.9 MB
EGAF00005774373 fastq.gz 141.3 MB
EGAF00005774374 fastq.gz 164.9 MB
EGAF00005774375 fastq.gz 164.4 MB
EGAF00005774376 fastq.gz 136.5 MB
EGAF00005774377 fastq.gz 136.0 MB
EGAF00005774378 fastq.gz 81.3 MB
EGAF00005774379 fastq.gz 141.0 MB
EGAF00005774380 fastq.gz 171.0 MB
EGAF00005774381 fastq.gz 170.5 MB
EGAF00005774382 fastq.gz 223.6 MB
EGAF00005774383 fastq.gz 222.6 MB
EGAF00005774384 fastq.gz 382.9 MB
EGAF00005774385 fastq.gz 380.6 MB
EGAF00005774386 fastq.gz 506.7 MB
EGAF00005774387 fastq.gz 257.8 MB
EGAF00005774388 fastq.gz 257.4 MB
EGAF00005774389 fastq.gz 214.4 MB
EGAF00005774390 fastq.gz 213.7 MB
EGAF00005774391 fastq.gz 124.0 MB
EGAF00005774392 fastq.gz 123.5 MB
EGAF00005774393 fastq.gz 107.8 MB
EGAF00005774394 fastq.gz 107.3 MB
EGAF00005774395 fastq.gz 229.6 MB
EGAF00005774396 fastq.gz 229.0 MB
EGAF00005774397 fastq.gz 237.0 MB
EGAF00005774398 fastq.gz 236.1 MB
EGAF00005774399 fastq.gz 232.5 MB
EGAF00005774400 fastq.gz 231.5 MB
EGAF00005774401 fastq.gz 202.6 MB
EGAF00005774402 fastq.gz 201.9 MB
EGAF00005774403 fastq.gz 261.5 MB
EGAF00005774404 fastq.gz 260.8 MB
EGAF00005774405 fastq.gz 204.3 MB
EGAF00005774406 fastq.gz 203.4 MB
EGAF00005774407 fastq.gz 216.0 MB
EGAF00005774408 fastq.gz 215.0 MB
EGAF00005774409 fastq.gz 253.2 MB
EGAF00005774410 fastq.gz 252.3 MB
EGAF00005774411 fastq.gz 215.0 MB
EGAF00005774412 fastq.gz 214.1 MB
EGAF00005774413 fastq.gz 196.5 MB
EGAF00005774414 fastq.gz 196.1 MB
EGAF00005774415 fastq.gz 153.2 MB
EGAF00005774416 fastq.gz 152.4 MB
EGAF00005774417 fastq.gz 236.6 MB
EGAF00005774418 fastq.gz 236.1 MB
EGAF00005774419 fastq.gz 157.5 MB
EGAF00005774420 fastq.gz 156.7 MB
EGAF00005774421 fastq.gz 236.1 MB
EGAF00005774422 fastq.gz 235.8 MB
EGAF00005774423 fastq.gz 172.9 MB
EGAF00005774424 fastq.gz 172.2 MB
EGAF00005774425 fastq.gz 35.5 MB
EGAF00005774426 fastq.gz 104.1 MB
EGAF00005774427 fastq.gz 109.9 MB
EGAF00005774428 fastq.gz 161.0 MB
EGAF00005774429 fastq.gz 247.0 MB
EGAF00005774430 fastq.gz 245.5 MB
EGAF00005774431 fastq.gz 218.7 MB
EGAF00005774432 fastq.gz 217.6 MB
EGAF00005774433 fastq.gz 948.3 MB
EGAF00005774434 fastq.gz 342.9 MB
EGAF00005774435 fastq.gz 129.7 MB
EGAF00005774436 fastq.gz 129.3 MB
EGAF00005774437 fastq.gz 371.0 MB
EGAF00005774438 fastq.gz 175.8 MB
EGAF00005774439 fastq.gz 175.1 MB
EGAF00005774440 fastq.gz 279.9 MB
EGAF00005774441 fastq.gz 279.2 MB
EGAF00005774442 fastq.gz 292.5 MB
EGAF00005774443 fastq.gz 290.6 MB
EGAF00005774444 fastq.gz 191.5 MB
EGAF00005774445 fastq.gz 190.8 MB
EGAF00005774446 fastq.gz 192.0 MB
EGAF00005774447 fastq.gz 191.3 MB
EGAF00005774448 fastq.gz 153.3 MB
EGAF00005774449 fastq.gz 152.6 MB
EGAF00005774450 fastq.gz 214.6 MB
EGAF00005774451 fastq.gz 214.2 MB
EGAF00005774452 fastq.gz 336.1 MB
EGAF00005774453 fastq.gz 334.5 MB
EGAF00005774454 fastq.gz 163.5 MB
EGAF00005774455 fastq.gz 163.0 MB
EGAF00005774456 fastq.gz 165.3 MB
EGAF00005774457 fastq.gz 164.7 MB
EGAF00005774458 fastq.gz 301.0 MB
EGAF00005774459 fastq.gz 166.3 MB
EGAF00005774460 fastq.gz 177.7 MB
EGAF00005774461 fastq.gz 176.7 MB
EGAF00005774462 fastq.gz 225.6 MB
EGAF00005774463 fastq.gz 225.0 MB
EGAF00005774464 fastq.gz 199.9 MB
EGAF00005774465 fastq.gz 198.9 MB
EGAF00005774466 fastq.gz 239.5 MB
EGAF00005774467 fastq.gz 238.8 MB
EGAF00005774468 fastq.gz 232.3 MB
EGAF00005774469 fastq.gz 231.2 MB
114 Files (24.9 GB)