Second primary vs. primary bowel malignancies
Data about copy number aberrations was obtained from primary CRC (n=90). DNA was collected from second primary CRC (in HL survivors, n = 39), and primary SBA (n=14). For second primary SBA (in HL and TC survivors), DNA was isolated for molecular analyses (n=7). Copy number aberrations were evaluated after low-coverage whole genome sequencing.
- 60 samples
- DAC: EGAC00001002487
- Technology: Illumina HiSeq 4000
To request access to the SecondPrimaryBowelMalignancies datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s).
To request access to the SecondPrimaryBowelMalignancies datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005940 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005774356 | fastq.gz | 634.2 MB | ||
| EGAF00005774357 | fastq.gz | 453.4 MB | ||
| EGAF00005774358 | fastq.gz | 177.8 MB | ||
| EGAF00005774359 | fastq.gz | 177.3 MB | ||
| EGAF00005774360 | fastq.gz | 211.7 MB | ||
| EGAF00005774361 | fastq.gz | 210.6 MB | ||
| EGAF00005774362 | fastq.gz | 188.9 MB | ||
| EGAF00005774363 | fastq.gz | 188.1 MB | ||
| EGAF00005774364 | fastq.gz | 127.9 MB | ||
| EGAF00005774365 | fastq.gz | 127.5 MB | ||
| EGAF00005774366 | fastq.gz | 209.6 MB | ||
| EGAF00005774367 | fastq.gz | 209.2 MB | ||
| EGAF00005774368 | fastq.gz | 229.9 MB | ||
| EGAF00005774369 | fastq.gz | 229.0 MB | ||
| EGAF00005774370 | fastq.gz | 187.7 MB | ||
| EGAF00005774371 | fastq.gz | 186.9 MB | ||
| EGAF00005774372 | fastq.gz | 141.9 MB | ||
| EGAF00005774373 | fastq.gz | 141.3 MB | ||
| EGAF00005774374 | fastq.gz | 164.9 MB | ||
| EGAF00005774375 | fastq.gz | 164.4 MB | ||
| EGAF00005774376 | fastq.gz | 136.5 MB | ||
| EGAF00005774377 | fastq.gz | 136.0 MB | ||
| EGAF00005774378 | fastq.gz | 81.3 MB | ||
| EGAF00005774379 | fastq.gz | 141.0 MB | ||
| EGAF00005774380 | fastq.gz | 171.0 MB | ||
| EGAF00005774381 | fastq.gz | 170.5 MB | ||
| EGAF00005774382 | fastq.gz | 223.6 MB | ||
| EGAF00005774383 | fastq.gz | 222.6 MB | ||
| EGAF00005774384 | fastq.gz | 382.9 MB | ||
| EGAF00005774385 | fastq.gz | 380.6 MB | ||
| EGAF00005774386 | fastq.gz | 506.7 MB | ||
| EGAF00005774387 | fastq.gz | 257.8 MB | ||
| EGAF00005774388 | fastq.gz | 257.4 MB | ||
| EGAF00005774389 | fastq.gz | 214.4 MB | ||
| EGAF00005774390 | fastq.gz | 213.7 MB | ||
| EGAF00005774391 | fastq.gz | 124.0 MB | ||
| EGAF00005774392 | fastq.gz | 123.5 MB | ||
| EGAF00005774393 | fastq.gz | 107.8 MB | ||
| EGAF00005774394 | fastq.gz | 107.3 MB | ||
| EGAF00005774395 | fastq.gz | 229.6 MB | ||
| EGAF00005774396 | fastq.gz | 229.0 MB | ||
| EGAF00005774397 | fastq.gz | 237.0 MB | ||
| EGAF00005774398 | fastq.gz | 236.1 MB | ||
| EGAF00005774399 | fastq.gz | 232.5 MB | ||
| EGAF00005774400 | fastq.gz | 231.5 MB | ||
| EGAF00005774401 | fastq.gz | 202.6 MB | ||
| EGAF00005774402 | fastq.gz | 201.9 MB | ||
| EGAF00005774403 | fastq.gz | 261.5 MB | ||
| EGAF00005774404 | fastq.gz | 260.8 MB | ||
| EGAF00005774405 | fastq.gz | 204.3 MB | ||
| EGAF00005774406 | fastq.gz | 203.4 MB | ||
| EGAF00005774407 | fastq.gz | 216.0 MB | ||
| EGAF00005774408 | fastq.gz | 215.0 MB | ||
| EGAF00005774409 | fastq.gz | 253.2 MB | ||
| EGAF00005774410 | fastq.gz | 252.3 MB | ||
| EGAF00005774411 | fastq.gz | 215.0 MB | ||
| EGAF00005774412 | fastq.gz | 214.1 MB | ||
| EGAF00005774413 | fastq.gz | 196.5 MB | ||
| EGAF00005774414 | fastq.gz | 196.1 MB | ||
| EGAF00005774415 | fastq.gz | 153.2 MB | ||
| EGAF00005774416 | fastq.gz | 152.4 MB | ||
| EGAF00005774417 | fastq.gz | 236.6 MB | ||
| EGAF00005774418 | fastq.gz | 236.1 MB | ||
| EGAF00005774419 | fastq.gz | 157.5 MB | ||
| EGAF00005774420 | fastq.gz | 156.7 MB | ||
| EGAF00005774421 | fastq.gz | 236.1 MB | ||
| EGAF00005774422 | fastq.gz | 235.8 MB | ||
| EGAF00005774423 | fastq.gz | 172.9 MB | ||
| EGAF00005774424 | fastq.gz | 172.2 MB | ||
| EGAF00005774425 | fastq.gz | 35.5 MB | ||
| EGAF00005774426 | fastq.gz | 104.1 MB | ||
| EGAF00005774427 | fastq.gz | 109.9 MB | ||
| EGAF00005774428 | fastq.gz | 161.0 MB | ||
| EGAF00005774429 | fastq.gz | 247.0 MB | ||
| EGAF00005774430 | fastq.gz | 245.5 MB | ||
| EGAF00005774431 | fastq.gz | 218.7 MB | ||
| EGAF00005774432 | fastq.gz | 217.6 MB | ||
| EGAF00005774433 | fastq.gz | 948.3 MB | ||
| EGAF00005774434 | fastq.gz | 342.9 MB | ||
| EGAF00005774435 | fastq.gz | 129.7 MB | ||
| EGAF00005774436 | fastq.gz | 129.3 MB | ||
| EGAF00005774437 | fastq.gz | 371.0 MB | ||
| EGAF00005774438 | fastq.gz | 175.8 MB | ||
| EGAF00005774439 | fastq.gz | 175.1 MB | ||
| EGAF00005774440 | fastq.gz | 279.9 MB | ||
| EGAF00005774441 | fastq.gz | 279.2 MB | ||
| EGAF00005774442 | fastq.gz | 292.5 MB | ||
| EGAF00005774443 | fastq.gz | 290.6 MB | ||
| EGAF00005774444 | fastq.gz | 191.5 MB | ||
| EGAF00005774445 | fastq.gz | 190.8 MB | ||
| EGAF00005774446 | fastq.gz | 192.0 MB | ||
| EGAF00005774447 | fastq.gz | 191.3 MB | ||
| EGAF00005774448 | fastq.gz | 153.3 MB | ||
| EGAF00005774449 | fastq.gz | 152.6 MB | ||
| EGAF00005774450 | fastq.gz | 214.6 MB | ||
| EGAF00005774451 | fastq.gz | 214.2 MB | ||
| EGAF00005774452 | fastq.gz | 336.1 MB | ||
| EGAF00005774453 | fastq.gz | 334.5 MB | ||
| EGAF00005774454 | fastq.gz | 163.5 MB | ||
| EGAF00005774455 | fastq.gz | 163.0 MB | ||
| EGAF00005774456 | fastq.gz | 165.3 MB | ||
| EGAF00005774457 | fastq.gz | 164.7 MB | ||
| EGAF00005774458 | fastq.gz | 301.0 MB | ||
| EGAF00005774459 | fastq.gz | 166.3 MB | ||
| EGAF00005774460 | fastq.gz | 177.7 MB | ||
| EGAF00005774461 | fastq.gz | 176.7 MB | ||
| EGAF00005774462 | fastq.gz | 225.6 MB | ||
| EGAF00005774463 | fastq.gz | 225.0 MB | ||
| EGAF00005774464 | fastq.gz | 199.9 MB | ||
| EGAF00005774465 | fastq.gz | 198.9 MB | ||
| EGAF00005774466 | fastq.gz | 239.5 MB | ||
| EGAF00005774467 | fastq.gz | 238.8 MB | ||
| EGAF00005774468 | fastq.gz | 232.3 MB | ||
| EGAF00005774469 | fastq.gz | 231.2 MB | ||
| 114 Files (24.9 GB) | ||||