About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Targeted Myeloid DNA-Panelsequencing, MLL

Sequencing data from a targeted myeloid DNA-Panelsequnencing at the MLL Dx, Munich lab. Targeted sequencing was performed using the Nextera DNA Flex library preparation kit, starting with 100ng of genomic DNA (Illumina, San Diego, CA, USA). The target regions were enriched by a custom xGen Lockdown panel using a hybridization capture workflow (IDT Integrated DNA Technologies, Coralville, IA, USA). All libraries were sequenced with 100bp paired-end reads on a NovaSeq6000 (Illumina) with a mean coverage of 3206x. Somatic variant calling was performed with Pisces and a sensitivity cut off of 2%. Large deletions and medium-sized insertions, as they are for example found in CALR and FLT3, were called with Pindel. Variant annotation considered the publicly available data bases Cosmic (v91), ClinVar (2020-03), gnomAd (non-cancer, v2.1.1), dbNSFP (v3.5) and UMD TP53 (2017_R2). Variants that are described as somatic, protein truncating or affecting splice sites were considered as mutations while variants with no or discrepant data base information were considered as variant of uncertain significance.

Request Access

DAP for genomic sequencing data generated as part of the "AML proteogenomic landscape" paper.

In requesting access to and retrieving data from this repository: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the authors and the relevant primary collectors and their funders. Suitable wording is provided upon request. 10. You accept that the authors, represented by the data accessing committee, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the authors, represented by the data accessing committee, or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the authors, represented by the data accessing committee, or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, including but not limited to the “Gendiagnostikgesetzt”, the EU General Data Protection Regulation (GDPR), and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EU. 17. This agreement shall be construed, interpreted and governed by the laws of the Federal Republic of Germany and the European Union and shall be subject to the non-exclusive jurisdiction of the german and european courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005950 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005777111 fastq.gz 361.1 MB Report
EGAF00005777112 fastq.gz 380.8 MB Report
EGAF00005777113 fastq.gz 287.0 MB Report
EGAF00005777114 fastq.gz 307.5 MB Report
EGAF00005777115 fastq.gz 299.5 MB Report
EGAF00005777116 fastq.gz 313.6 MB Report
EGAF00005777117 fastq.gz 272.5 MB Report
EGAF00005777118 fastq.gz 283.5 MB Report
EGAF00005777119 fastq.gz 569.1 MB Report
EGAF00005777120 fastq.gz 604.4 MB Report
EGAF00005777121 fastq.gz 776.2 MB Report
EGAF00005777122 fastq.gz 816.4 MB Report
EGAF00005777123 fastq.gz 323.4 MB Report
EGAF00005777124 fastq.gz 342.1 MB Report
EGAF00005777125 fastq.gz 619.6 MB Report
EGAF00005777126 fastq.gz 610.3 MB Report
EGAF00005777127 fastq.gz 579.8 MB Report
EGAF00005777128 fastq.gz 606.6 MB Report
EGAF00005777129 fastq.gz 287.3 MB Report
EGAF00005777130 fastq.gz 301.0 MB Report
EGAF00005777131 fastq.gz 302.5 MB Report
EGAF00005777132 fastq.gz 318.9 MB Report
EGAF00005777133 fastq.gz 457.5 MB Report
EGAF00005777134 fastq.gz 488.8 MB Report
EGAF00005777135 fastq.gz 346.1 MB Report
EGAF00005777136 fastq.gz 367.1 MB Report
EGAF00005777137 fastq.gz 895.3 MB Report
EGAF00005777138 fastq.gz 959.2 MB Report
EGAF00005777139 fastq.gz 349.4 MB Report
EGAF00005777140 fastq.gz 369.0 MB Report
EGAF00005777141 fastq.gz 323.3 MB Report
EGAF00005777142 fastq.gz 341.5 MB Report
EGAF00005777143 fastq.gz 335.2 MB Report
EGAF00005777144 fastq.gz 353.3 MB Report
EGAF00005777145 fastq.gz 388.9 MB Report
EGAF00005777146 fastq.gz 407.0 MB Report
EGAF00005777147 fastq.gz 322.3 MB Report
EGAF00005777148 fastq.gz 337.7 MB Report
EGAF00005777149 fastq.gz 299.1 MB Report
EGAF00005777150 fastq.gz 310.1 MB Report
EGAF00005777151 fastq.gz 692.6 MB Report
EGAF00005777152 fastq.gz 567.2 MB Report
EGAF00005777153 fastq.gz 332.9 MB Report
EGAF00005777154 fastq.gz 348.0 MB Report
EGAF00005777155 fastq.gz 289.1 MB Report
EGAF00005777156 fastq.gz 308.4 MB Report
EGAF00005777157 fastq.gz 295.4 MB Report
EGAF00005777158 fastq.gz 306.7 MB Report
EGAF00005777159 fastq.gz 335.3 MB Report
EGAF00005777160 fastq.gz 348.7 MB Report
EGAF00005777161 fastq.gz 333.1 MB Report
EGAF00005777162 fastq.gz 354.5 MB Report
EGAF00005777163 fastq.gz 285.6 MB Report
EGAF00005777164 fastq.gz 307.2 MB Report
EGAF00005777165 fastq.gz 304.8 MB Report
EGAF00005777166 fastq.gz 320.0 MB Report
EGAF00005777167 fastq.gz 682.6 MB Report
EGAF00005777168 fastq.gz 697.5 MB Report
EGAF00005777169 fastq.gz 633.7 MB Report
EGAF00005777170 fastq.gz 621.8 MB Report
EGAF00005777171 fastq.gz 271.4 MB Report
EGAF00005777172 fastq.gz 285.0 MB Report
EGAF00005777173 fastq.gz 324.0 MB Report
EGAF00005777174 fastq.gz 338.1 MB Report
EGAF00005777175 fastq.gz 345.7 MB Report
EGAF00005777176 fastq.gz 361.4 MB Report
EGAF00005777177 fastq.gz 365.1 MB Report
EGAF00005777178 fastq.gz 387.5 MB Report
EGAF00005777179 fastq.gz 325.5 MB Report
EGAF00005777180 fastq.gz 339.8 MB Report
EGAF00005777181 fastq.gz 433.9 MB Report
EGAF00005777182 fastq.gz 453.2 MB Report
EGAF00005777183 fastq.gz 367.5 MB Report
EGAF00005777184 fastq.gz 388.5 MB Report
EGAF00005777185 fastq.gz 338.2 MB Report
EGAF00005777186 fastq.gz 355.0 MB Report
EGAF00005777187 fastq.gz 725.5 MB Report
EGAF00005777188 fastq.gz 789.1 MB Report
EGAF00005777189 fastq.gz 329.1 MB Report
EGAF00005777190 fastq.gz 347.2 MB Report
EGAF00005777191 fastq.gz 291.2 MB Report
EGAF00005777192 fastq.gz 281.2 MB Report
EGAF00005777193 fastq.gz 320.8 MB Report
EGAF00005777194 fastq.gz 337.1 MB Report
EGAF00005777195 fastq.gz 324.9 MB Report
EGAF00005777196 fastq.gz 350.7 MB Report
EGAF00005777197 fastq.gz 681.4 MB Report
EGAF00005777198 fastq.gz 624.5 MB Report
EGAF00005777199 fastq.gz 392.0 MB Report
EGAF00005777200 fastq.gz 408.7 MB Report
EGAF00005777201 fastq.gz 291.9 MB Report
EGAF00005777202 fastq.gz 303.0 MB Report
EGAF00005777203 fastq.gz 325.0 MB Report
EGAF00005777204 fastq.gz 343.8 MB Report
EGAF00005777205 fastq.gz 367.7 MB Report
EGAF00005777206 fastq.gz 387.9 MB Report
EGAF00005777207 fastq.gz 325.0 MB Report
EGAF00005777208 fastq.gz 339.7 MB Report
EGAF00005777209 fastq.gz 312.6 MB Report
EGAF00005777210 fastq.gz 330.5 MB Report
EGAF00005777211 fastq.gz 299.0 MB Report
EGAF00005777212 fastq.gz 313.4 MB Report
EGAF00005777213 fastq.gz 290.1 MB Report
EGAF00005777214 fastq.gz 302.4 MB Report
EGAF00005777215 fastq.gz 342.2 MB Report
EGAF00005777216 fastq.gz 357.5 MB Report
EGAF00005777217 fastq.gz 365.1 MB Report
EGAF00005777218 fastq.gz 379.1 MB Report
EGAF00005777219 fastq.gz 333.1 MB Report
EGAF00005777220 fastq.gz 347.9 MB Report
EGAF00005777221 fastq.gz 762.3 MB Report
EGAF00005777222 fastq.gz 771.0 MB Report
EGAF00005777223 fastq.gz 700.2 MB Report
EGAF00005777224 fastq.gz 713.2 MB Report
EGAF00005777225 fastq.gz 301.1 MB Report
EGAF00005777226 fastq.gz 311.0 MB Report
EGAF00005777227 fastq.gz 782.4 MB Report
EGAF00005777228 fastq.gz 824.8 MB Report
EGAF00005777229 fastq.gz 339.3 MB Report
EGAF00005777230 fastq.gz 356.1 MB Report
EGAF00005777231 fastq.gz 761.8 MB Report
EGAF00005777232 fastq.gz 802.1 MB Report
EGAF00005777233 fastq.gz 580.4 MB Report
EGAF00005777234 fastq.gz 616.6 MB Report
EGAF00005777235 fastq.gz 270.7 MB Report
EGAF00005777236 fastq.gz 282.7 MB Report
EGAF00005777237 fastq.gz 323.1 MB Report
EGAF00005777238 fastq.gz 338.1 MB Report
EGAF00005777239 fastq.gz 755.8 MB Report
EGAF00005777240 fastq.gz 798.6 MB Report
EGAF00005777241 fastq.gz 575.4 MB Report
EGAF00005777242 fastq.gz 604.6 MB Report
EGAF00005777243 fastq.gz 310.3 MB Report
EGAF00005777244 fastq.gz 329.2 MB Report
EGAF00005777245 fastq.gz 334.8 MB Report
EGAF00005777246 fastq.gz 354.8 MB Report
EGAF00005777247 fastq.gz 783.7 MB Report
EGAF00005777248 fastq.gz 820.4 MB Report
EGAF00005777249 fastq.gz 635.3 MB Report
EGAF00005777250 fastq.gz 669.8 MB Report
EGAF00005777251 fastq.gz 300.2 MB Report
EGAF00005777252 fastq.gz 335.4 MB Report
EGAF00005777253 fastq.gz 326.6 MB Report
EGAF00005777254 fastq.gz 346.1 MB Report
EGAF00005777255 fastq.gz 607.2 MB Report
EGAF00005777256 fastq.gz 651.4 MB Report
EGAF00005777257 fastq.gz 324.5 MB Report
EGAF00005777258 fastq.gz 337.5 MB Report
EGAF00005777259 fastq.gz 372.5 MB Report
EGAF00005777260 fastq.gz 390.8 MB Report
EGAF00005777261 fastq.gz 323.0 MB Report
EGAF00005777262 fastq.gz 338.7 MB Report
EGAF00005777263 fastq.gz 333.9 MB Report
EGAF00005777264 fastq.gz 350.7 MB Report
EGAF00005777265 fastq.gz 300.6 MB Report
EGAF00005777266 fastq.gz 318.9 MB Report
EGAF00005777267 fastq.gz 292.2 MB Report
EGAF00005777268 fastq.gz 300.7 MB Report
EGAF00005777269 fastq.gz 330.6 MB Report
EGAF00005777270 fastq.gz 346.9 MB Report
EGAF00005777271 fastq.gz 375.4 MB Report
EGAF00005777272 fastq.gz 394.7 MB Report
EGAF00005777273 fastq.gz 303.0 MB Report
EGAF00005777274 fastq.gz 320.1 MB Report
EGAF00005777275 fastq.gz 378.3 MB Report
EGAF00005777276 fastq.gz 396.1 MB Report
EGAF00005777277 fastq.gz 293.7 MB Report
EGAF00005777278 fastq.gz 300.9 MB Report
EGAF00005777279 fastq.gz 461.0 MB Report
EGAF00005777280 fastq.gz 490.7 MB Report
EGAF00005777281 fastq.gz 327.2 MB Report
EGAF00005777282 fastq.gz 344.6 MB Report
EGAF00005777283 fastq.gz 759.2 MB Report
EGAF00005777284 fastq.gz 797.0 MB Report
EGAF00005777285 fastq.gz 320.9 MB Report
EGAF00005777286 fastq.gz 340.9 MB Report
EGAF00005777287 fastq.gz 315.1 MB Report
EGAF00005777288 fastq.gz 330.8 MB Report
EGAF00005777289 fastq.gz 889.0 MB Report
EGAF00005777290 fastq.gz 955.4 MB Report
EGAF00005777291 fastq.gz 612.3 MB Report
EGAF00005777292 fastq.gz 654.0 MB Report
EGAF00005777293 fastq.gz 605.7 MB Report
EGAF00005777294 fastq.gz 633.8 MB Report
EGAF00005777295 fastq.gz 330.8 MB Report
EGAF00005777296 fastq.gz 347.8 MB Report
EGAF00005777297 fastq.gz 284.9 MB Report
EGAF00005777298 fastq.gz 300.3 MB Report
EGAF00005777299 fastq.gz 730.5 MB Report
EGAF00005777300 fastq.gz 791.7 MB Report
EGAF00005777301 fastq.gz 630.3 MB Report
EGAF00005777302 fastq.gz 667.0 MB Report
EGAF00005777303 fastq.gz 370.9 MB Report
EGAF00005777304 fastq.gz 389.7 MB Report
EGAF00005777305 fastq.gz 287.3 MB Report
EGAF00005777306 fastq.gz 307.7 MB Report
EGAF00005777307 fastq.gz 273.3 MB Report
EGAF00005777308 fastq.gz 285.7 MB Report
EGAF00005777309 fastq.gz 293.4 MB Report
EGAF00005777310 fastq.gz 305.9 MB Report
EGAF00005777311 fastq.gz 322.6 MB Report
EGAF00005777312 fastq.gz 349.8 MB Report
EGAF00005777313 fastq.gz 336.2 MB Report
EGAF00005777314 fastq.gz 351.8 MB Report
EGAF00005777315 fastq.gz 336.8 MB Report
EGAF00005777316 fastq.gz 350.2 MB Report
EGAF00005777317 fastq.gz 382.6 MB Report
EGAF00005777318 fastq.gz 401.1 MB Report
EGAF00005777319 fastq.gz 298.1 MB Report
EGAF00005777320 fastq.gz 334.6 MB Report
EGAF00005777321 fastq.gz 285.8 MB Report
EGAF00005777322 fastq.gz 300.7 MB Report
EGAF00005777323 fastq.gz 343.1 MB Report
EGAF00005777324 fastq.gz 360.2 MB Report
EGAF00005777325 fastq.gz 333.6 MB Report
EGAF00005777326 fastq.gz 349.1 MB Report
EGAF00005777327 fastq.gz 569.5 MB Report
EGAF00005777328 fastq.gz 596.1 MB Report
EGAF00005777329 fastq.gz 310.5 MB Report
EGAF00005777330 fastq.gz 330.1 MB Report
EGAF00005777331 fastq.gz 308.2 MB Report
EGAF00005777332 fastq.gz 328.9 MB Report
EGAF00005777333 fastq.gz 286.7 MB Report
EGAF00005777334 fastq.gz 301.0 MB Report
EGAF00005777335 fastq.gz 437.9 MB Report
EGAF00005777336 fastq.gz 455.4 MB Report
EGAF00005777337 fastq.gz 301.7 MB Report
EGAF00005777338 fastq.gz 314.5 MB Report
EGAF00005777339 fastq.gz 322.8 MB Report
EGAF00005777340 fastq.gz 339.0 MB Report
EGAF00005777341 fastq.gz 602.4 MB Report
EGAF00005777342 fastq.gz 633.2 MB Report
EGAF00005777343 fastq.gz 253.3 MB Report
EGAF00005777344 fastq.gz 266.3 MB Report
EGAF00005777345 fastq.gz 375.0 MB Report
EGAF00005777346 fastq.gz 391.6 MB Report
EGAF00005777347 fastq.gz 583.4 MB Report
EGAF00005777348 fastq.gz 610.0 MB Report
EGAF00005777349 fastq.gz 363.7 MB Report
EGAF00005777350 fastq.gz 381.9 MB Report
EGAF00005777351 fastq.gz 325.8 MB Report
EGAF00005777352 fastq.gz 342.6 MB Report
EGAF00005777353 fastq.gz 304.6 MB Report
EGAF00005777354 fastq.gz 324.0 MB Report
EGAF00005777355 fastq.gz 811.2 MB Report
EGAF00005777356 fastq.gz 851.4 MB Report
EGAF00005777357 fastq.gz 362.4 MB Report
EGAF00005777358 fastq.gz 377.9 MB Report
EGAF00005777359 fastq.gz 803.2 MB Report
EGAF00005777360 fastq.gz 846.0 MB Report
EGAF00005777361 fastq.gz 251.8 MB Report
EGAF00005777362 fastq.gz 303.4 MB Report
EGAF00005777363 fastq.gz 380.1 MB Report
EGAF00005777364 fastq.gz 778.3 MB Report
EGAF00005777365 fastq.gz 349.2 MB Report
EGAF00005777366 fastq.gz 326.3 MB Report
EGAF00005777367 fastq.gz 296.9 MB Report
EGAF00005777368 fastq.gz 317.1 MB Report
EGAF00005779668 xlsx 464.3 kB
259 Files (109.8 GB)