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PYDP Papuan Y chromosome Diversity Panel

The PYDP dataset includes 26 bam files of Y chromosome sequences for Papua New Guinean individuals from different locations, extracted from whole genome sequences. DNA was extrated from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer.

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The PYDP data is released for research purposes only. The PYDP dataset includes 26 Y chromosome sequences extracted from whole genome sequences, in BAM format. These are from Papua New Guinean individuals from different locations. DNA was extracted from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer. Data access is granted by the PYDP Data Access committee and Data is released by European Genome-Phenome Archive.

Request to Papua New Guinea Y chromosome Diversity Data Access Committee All research projects must be approved by the PYDP DA committee. of ethical approvals, including documentation from a Papuan New Guinean ethics body, may be necessary for approval to be granted in some cases. In case of approval, signing the Data Access Policy Data released through European Genome-Phenome Archive. Data is to be used for research purposes only (described in Appendix II). Limitations in Appendix I Users must be formally affiliated with an officially recognized Institution. User cannot publicly release PYDP data. All rights of data release remain with the PYDP DA committee. Users can replicate existing studies published by PYDP. Users can conduct new demographic studies which do not compete with ongoing studies by PYDP. User cannot undertake studies of a medical or clinical nature without first seeking the approval PYDP DA committee. User cannot undertake studies for personal use, such as family history research, or perform this research for others. A moratorium on publication until a given date may be a condition of data access and use, primarily in cases where a study proposed by the User with ongoing studies by PYDP.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006025 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005803872 bam 222.9 MB
EGAF00005803873 bam 228.2 MB
EGAF00005803874 bam 214.6 MB
EGAF00005803875 bam 243.5 MB
EGAF00005803876 bam 229.4 MB
EGAF00005803877 bam 225.2 MB
EGAF00005803878 bam 187.7 MB
EGAF00005803879 bam 210.7 MB
EGAF00005803880 bam 223.8 MB
EGAF00005803881 bam 238.2 MB
EGAF00005803882 bam 209.1 MB
EGAF00005803883 bam 203.2 MB
EGAF00005803884 bam 184.6 MB
EGAF00005803885 bam 219.2 MB
EGAF00005803886 bam 194.8 MB
EGAF00005803887 bam 230.7 MB
EGAF00005803888 bam 241.7 MB
EGAF00005803889 bam 280.8 MB
EGAF00005803890 bam 207.3 MB
EGAF00005803891 bam 197.5 MB
EGAF00005803892 bam 249.8 MB
EGAF00005803893 bam 218.4 MB
EGAF00005803894 bam 218.6 MB
EGAF00005803895 bam 215.2 MB
EGAF00005803896 bam 198.5 MB
EGAF00005803897 bam 198.7 MB
26 Files (5.7 GB)