IYDP Indonesian Y chromosome Diversity Project
The IYDP dataset includes BAM files of 126 Y chromosomes extracted from whole genome sequences. These are from individuals from a broad range of Indonesian islands - communities close to mainland Asia through to New Guinea. The original whole genome sequencing libraries were prepared using TruSeq DNA PCR-Free and TruSeq Nano DNA HT kits depending on DNA quantity. 150 bp paired-end sequencing was performed on the Illumina HiSeq X sequencer. Individuals were sequenced to expected mean depth of 30x, with an achieved median depth of raw reads across samples of 43x.
- 126 samples
- DAC: EGAC00001002533
- Technology: HiSeq X Ten
The IYDP data is released for research purposes only. The IYDP dataset includes BAM files of 126 Y chromosomes extracted from whole genome sequences. These are from individuals from a broad range of Indonesian islands - communities close to mainland Asia through to New Guinea. Data access is granted by the IYDP Data Access committee and Data is released by European Genome-Phenome Archive.
Request to Indonesian Y chromosome Diversity Data Access Committee (IYDP) 1. All research projects must be approved by the IYDP DA committee. 2. Evidence of ethical approvals, including documentation from an Indonesian ethics body, may be necessary for approval to be granted in some cases. 3. In case of approval, signing the Data Access Policy 4.Data released through European Genome-Phenome Archive. Users must be formally affiliated with an officially recognized Institution The User cannot publicly release IYDP data, all rights regarding data release remain with the IYDP committee. The User cannot use IYDP data for for-profit purposes. The User can replicate existing studies published by the Indonesian Y Diversity Project (IYDP) The User cannot undertake studies of a medical or clinical nature without first seeking the approval of the IYDP committee. Evidence of specific ethical approvals, including documentation from an Indonesian ethics board, will likely be necessary for approval to be granted. All uses of the data must have specific prior approval from the IYDP committee A moratorium on publication until a given date may be a condition of data access and use in some cases. Full Data Access Policy: https://www.genomicus.com/public/IYDP_DATA_ACCESS_POLICY.docx
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
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