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Spatial transcriptome sequence data from cross section of cancer containing prostates

Spatial transcriptome sequence data from two tumour containing prostates. Entire cross section of organ divided into cubes to fit spatial transcriptomics arrays. The dataset contains paired-end sequences from 21 sections of 1k array sections and 9 sections of 10x Visium sections for patient 1 as well as 28 sections of 10x Visium sections for patient 2.

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Data Access Agreement

Data Access Agreement The terms and conditions stipulated below govern access to the controlled access data to which the Data Recipient has requested access for the purposes of the Research Project. Terms and conditions 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Research Project described and only for purposes which are within the Data Use Limitations. 2. You agree to only use the Data in accordance with all applicable Swedish legislation, rules, regulations, guidelines and ethical requirements, such as but not limited to GDPR and Swedish data protection laws. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You agree not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to identify Data Subjects. 5. You and your Authorised Personnel agree to take into consideration any usage restrictions, stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 6. You agree that in handling the Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following protective measures: a. Logging and auditing of Access to the Data and to the computer network; b. Strong password protection to Access computer network; c. Strong password protection and screen locks, set to lock after maximum five (5) minutes of inactivity to Access personal computers, workstations, laptops, smartphones and other portable devices; d. Virus and malware protection to computers on the computer network; e. Secure backup procedure; f. The Data shall be stored protected by strong encryption and preferably in the original encrypted form from EGA; g. The Data shall only be decrypted when necessary for the performance of the Research Project; h. Any decrypted files, including additional copies, any computer records or files containing Data that have been created by the Your automatic archiving and back-up procedures shall be deleted at the end of the Research Project; i. The Data shall not be accessed outside Your Institution’s network, using unauthorised devices, including personal devices, via mobile or wireless devices, or devices on networks with wireless access points; j. The Data shall not be stored on any portable device (laptop, smartphone, etc.) unless absolutely necessary and always strongly encrypted; k. Data written to removable storage media shall be automatically encrypted without Your intervention; 7. You acknowledge that Access to the Data is granted for the duration of the Research Project. Any use of the Data for another Research Project will need to be approved under a new Agreement. 8. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 9. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 10. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further research and to follow the applicable laws of the Data Controller(s). 11. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 12. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any purpose of the Data. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You agree to only transfer or disclose the Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. 16. You may not transfer the Data itself to anyone outside Your Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an External Collaborator, the External Collaborator must complete a separate Data Access Agreement. 18. You shall ensure that all who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a breach of the terms or conditions of this agreement by You and Your Authorised Personnel, You must notify Data Controller(s) as soon as You become aware of the breach. 21. You accept that this Agreement will terminate immediately upon any breach by You, or its termination. 22. You agree to destroy/discard the Data held, once it is no longer used for the Research Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 23. You agree to destroy/discard the Data held, including copies and backup copies, when this agreement terminates for any reason. This clause does not prevent You from retaining the Data for archival purpose in conformity with audit or legal requirements. 24. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. The award of the arbitration will be final and binding upon the parties concerned. 25. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. 26. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of Sweden, and shall be subject to the exclusive jurisdiction of the Swedish courts of law. Data Use Ontology (DUO) DUO:0000006 (health/medical/biomedical research and clinical care) DUO:0000018 (not-for-profit use only) DUO:0000021 (ethic approval required)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006124 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006128614 fastq.gz 4.6 GB
EGAF00006128615 fastq.gz 4.3 GB
EGAF00006128616 fastq.gz 4.7 GB
EGAF00006128617 fastq.gz 4.5 GB
EGAF00006128618 fastq.gz 3.2 GB
EGAF00006128619 fastq.gz 11.0 GB
EGAF00006128620 fastq.gz 3.6 GB
EGAF00006128621 fastq.gz 12.3 GB
EGAF00006128622 fastq.gz 3.1 GB
EGAF00006128623 fastq.gz 10.5 GB
EGAF00006128624 fastq.gz 7.7 GB
EGAF00006128625 fastq.gz 7.0 GB
EGAF00006128626 fastq.gz 5.2 GB
EGAF00006128627 fastq.gz 4.8 GB
EGAF00006128628 fastq.gz 7.9 GB
EGAF00006128629 fastq.gz 7.0 GB
EGAF00006128630 fastq.gz 7.2 GB
EGAF00006128631 fastq.gz 6.5 GB
EGAF00006128632 fastq.gz 2.7 GB
EGAF00006128633 fastq.gz 9.5 GB
EGAF00006128634 fastq.gz 2.7 GB
EGAF00006128635 fastq.gz 9.4 GB
EGAF00006128636 fastq.gz 2.9 GB
EGAF00006128637 fastq.gz 9.9 GB
EGAF00006128638 fastq.gz 6.8 GB
EGAF00006128639 fastq.gz 6.3 GB
EGAF00006128640 fastq.gz 6.6 GB
EGAF00006128641 fastq.gz 6.0 GB
EGAF00006128642 fastq.gz 2.3 GB
EGAF00006128643 fastq.gz 8.0 GB
EGAF00006128644 fastq.gz 3.2 GB
EGAF00006128645 fastq.gz 10.9 GB
EGAF00006128646 fastq.gz 3.2 GB
EGAF00006128647 fastq.gz 11.1 GB
EGAF00006128648 fastq.gz 11.6 GB
EGAF00006128649 fastq.gz 10.8 GB
EGAF00006128650 fastq.gz 2.0 GB
EGAF00006128651 fastq.gz 6.9 GB
EGAF00006128652 fastq.gz 2.2 GB
EGAF00006128653 fastq.gz 7.7 GB
EGAF00006128654 fastq.gz 7.5 GB
EGAF00006128655 fastq.gz 6.9 GB
EGAF00006128656 fastq.gz 5.3 GB
EGAF00006128657 fastq.gz 4.8 GB
EGAF00006128658 fastq.gz 4.8 GB
EGAF00006128659 fastq.gz 4.4 GB
EGAF00006128660 fastq.gz 7.3 GB
EGAF00006128661 fastq.gz 20.7 GB
EGAF00006128662 fastq.gz 6.6 GB
EGAF00006128663 fastq.gz 6.0 GB
EGAF00006128664 fastq.gz 7.9 GB
EGAF00006128665 fastq.gz 22.7 GB
EGAF00006128666 fastq.gz 4.1 GB
EGAF00006128667 fastq.gz 11.6 GB
EGAF00006128668 fastq.gz 5.4 GB
EGAF00006128669 fastq.gz 5.0 GB
EGAF00006128670 fastq.gz 6.5 GB
EGAF00006128671 fastq.gz 5.8 GB
EGAF00006128672 fastq.gz 2.6 GB
EGAF00006128673 fastq.gz 8.9 GB
EGAF00006128674 fastq.gz 4.0 GB
EGAF00006128675 fastq.gz 10.9 GB
EGAF00006128676 fastq.gz 6.3 GB
EGAF00006128677 fastq.gz 22.0 GB
EGAF00006128678 fastq.gz 3.3 GB
EGAF00006128679 fastq.gz 11.4 GB
EGAF00006128680 fastq.gz 3.4 GB
EGAF00006128681 fastq.gz 11.7 GB
EGAF00006128682 fastq.gz 3.5 GB
EGAF00006128683 fastq.gz 11.9 GB
EGAF00006128684 fastq.gz 3.9 GB
EGAF00006128685 fastq.gz 10.6 GB
EGAF00006128686 fastq.gz 4.9 GB
EGAF00006128687 fastq.gz 13.5 GB
EGAF00006128688 fastq.gz 3.8 GB
EGAF00006128689 fastq.gz 12.9 GB
EGAF00006128690 fastq.gz 6.5 GB
EGAF00006128691 fastq.gz 5.9 GB
EGAF00006128692 fastq.gz 10.4 GB
EGAF00006128693 fastq.gz 9.4 GB
EGAF00006128694 fastq.gz 2.3 GB
EGAF00006128695 fastq.gz 7.9 GB
EGAF00006128696 fastq.gz 3.7 GB
EGAF00006128697 fastq.gz 12.6 GB
EGAF00006128698 fastq.gz 3.0 GB
EGAF00006128699 fastq.gz 10.4 GB
EGAF00006128700 fastq.gz 2.0 GB
EGAF00006128701 fastq.gz 6.8 GB
EGAF00006128702 fastq.gz 6.2 GB
EGAF00006128703 fastq.gz 17.5 GB
EGAF00006128704 fastq.gz 4.7 GB
EGAF00006128705 fastq.gz 4.4 GB
EGAF00006128706 fastq.gz 5.0 GB
EGAF00006128707 fastq.gz 4.6 GB
EGAF00006128708 fastq.gz 2.9 GB
EGAF00006128709 fastq.gz 9.8 GB
EGAF00006128710 fastq.gz 6.4 GB
EGAF00006128711 fastq.gz 5.8 GB
EGAF00006128712 fastq.gz 6.7 GB
EGAF00006128713 fastq.gz 6.2 GB
EGAF00006128714 fastq.gz 2.2 GB
EGAF00006128715 fastq.gz 7.5 GB
EGAF00006128716 fastq.gz 2.4 GB
EGAF00006128717 fastq.gz 8.3 GB
EGAF00006128718 fastq.gz 2.1 GB
EGAF00006128719 fastq.gz 7.4 GB
EGAF00006128720 fastq.gz 2.9 GB
EGAF00006128721 fastq.gz 9.9 GB
EGAF00006128722 fastq.gz 2.8 GB
EGAF00006128723 fastq.gz 9.9 GB
EGAF00006128724 fastq.gz 3.5 GB
EGAF00006128725 fastq.gz 11.9 GB
EGAF00006128726 fastq.gz 2.9 GB
EGAF00006128727 fastq.gz 9.9 GB
EGAF00006128728 fastq.gz 3.0 GB
EGAF00006128729 fastq.gz 10.0 GB
116 Files (808.2 GB)