About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Interval whole-genome sequence (WGS) data

Whole-genome sequencing (WGS) genotype data generated as part of the Interval project. The data are reported, separately per chromosome, in variant call format (VCF). The genotypes are denoted in diploid format (for chrY the genotype 1 denoted as 1/1 and 0 denoted as 0/0). Note that multi-allelic variants are present in the data, but encoded to appear on separate, consecutive lines. The data are reported in following versions - unphased, phased, phased with imputation, sites only. Note: the unphased version has additional genotype information, while the phased versions only contain the genotypes.

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Wellcome Trust Sanger Institute Data Sharing Policy

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002787 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00006072271 vcf.gz 250.6 GB
EGAF00006076425 vcf.gz 3.5 GB Report
EGAF00006076426 vcf.gz 3.5 GB Report
EGAF00006076427 vcf.gz 3.4 GB Report
EGAF00006076428 vcf.gz 2.5 GB Report
EGAF00006076429 vcf.gz 2.3 GB Report
EGAF00006076430 vcf.gz 2.0 GB Report
EGAF00006076431 vcf.gz 2.2 GB Report
EGAF00006076432 vcf.gz 2.0 GB Report
EGAF00006076433 vcf.gz 2.0 GB Report
EGAF00006076434 vcf.gz 1.7 GB Report
EGAF00006076435 vcf.gz 5.5 GB Report
EGAF00006076436 vcf.gz 1.6 GB Report
EGAF00006076437 vcf.gz 936.8 MB Report
EGAF00006076438 vcf.gz 999.5 MB Report
EGAF00006076439 vcf.gz 6.0 GB Report
EGAF00006076440 vcf.gz 5.0 GB Report
EGAF00006076441 vcf.gz 5.0 GB Report
EGAF00006076442 vcf.gz 4.5 GB Report
EGAF00006076443 vcf.gz 4.5 GB Report
EGAF00006076444 vcf.gz 4.1 GB Report
EGAF00006076445 vcf.gz 3.9 GB Report
EGAF00006076446 vcf.gz 3.1 GB Report
EGAF00006076447 vcf.gz 1.6 GB Report
EGAF00006106245 vcf.gz 3.4 GB Report
EGAF00006106246 vcf.gz 3.3 GB Report
EGAF00006106247 vcf.gz 3.2 GB Report
EGAF00006106248 vcf.gz 2.4 GB Report
EGAF00006106249 vcf.gz 2.2 GB Report
EGAF00006106250 vcf.gz 1.9 GB Report
EGAF00006106251 vcf.gz 2.1 GB Report
EGAF00006106252 vcf.gz 1.9 GB Report
EGAF00006106253 vcf.gz 1.9 GB Report
EGAF00006106254 vcf.gz 1.6 GB Report
EGAF00006106255 vcf.gz 5.3 GB Report
EGAF00006106256 vcf.gz 1.5 GB Report
EGAF00006106257 vcf.gz 891.9 MB Report
EGAF00006106258 vcf.gz 942.3 MB Report
EGAF00006106259 vcf.gz 5.7 GB Report
EGAF00006106260 vcf.gz 4.8 GB Report
EGAF00006106261 vcf.gz 4.8 GB Report
EGAF00006106262 vcf.gz 4.3 GB Report
EGAF00006106263 vcf.gz 4.3 GB Report
EGAF00006106264 vcf.gz 3.9 GB Report
EGAF00006106265 vcf.gz 3.7 GB Report
EGAF00006106266 vcf.gz 2.9 GB Report
EGAF00006106267 vcf.gz 1.5 GB Report
EGAF00006127299 vcf.gz 250.2 GB
EGAF00006127300 vcf.gz 244.6 GB
EGAF00006127301 vcf.gz 176.2 GB
EGAF00006127302 vcf.gz 163.9 GB
EGAF00006127303 vcf.gz 149.9 GB
EGAF00006127304 vcf.gz 169.9 GB
EGAF00006127305 vcf.gz 153.7 GB
EGAF00006127306 vcf.gz 138.9 GB
EGAF00006127307 vcf.gz 123.0 GB
EGAF00006127308 vcf.gz 409.1 GB
EGAF00006127309 vcf.gz 116.6 GB
EGAF00006127310 vcf.gz 65.3 GB
EGAF00006127470 vcf.gz 73.3 GB
EGAF00006127471 vcf.gz 439.7 GB
EGAF00006127472 vcf.gz 365.0 GB
EGAF00006127473 vcf.gz 349.8 GB
EGAF00006128182 vcf.gz 295.4 MB
EGAF00006128183 vcf.gz 294.9 MB
EGAF00006128184 vcf.gz 288.4 MB
EGAF00006128185 vcf.gz 209.2 MB
EGAF00006128186 vcf.gz 193.8 MB
EGAF00006128187 vcf.gz 176.7 MB
EGAF00006128188 vcf.gz 198.7 MB
EGAF00006128189 vcf.gz 179.8 MB
EGAF00006128190 vcf.gz 164.7 MB
EGAF00006128191 vcf.gz 143.3 MB
EGAF00006128192 vcf.gz 482.2 MB
EGAF00006128193 vcf.gz 136.7 MB
EGAF00006128194 vcf.gz 77.2 MB
EGAF00006128195 vcf.gz 85.4 MB
EGAF00006128196 vcf.gz 519.2 MB
EGAF00006128197 vcf.gz 431.4 MB
EGAF00006128198 vcf.gz 415.1 MB
EGAF00006128199 vcf.gz 386.5 MB
EGAF00006128200 vcf.gz 370.6 MB
EGAF00006128201 vcf.gz 350.1 MB
EGAF00006128202 vcf.gz 332.8 MB
EGAF00006128203 vcf.gz 262.8 MB
EGAF00006128204 vcf.gz 117.1 MB
EGAF00006128205 vcf.gz 484.4 kB
EGAF00006129904 vcf.gz 313.3 GB
EGAF00006129905 vcf.gz 296.7 GB
EGAF00006130536 vcf.gz 326.9 GB
EGAF00006130537 vcf.gz 282.2 GB
EGAF00006130538 vcf.gz 175.6 MB
EGAF00006130539 vcf.gz 109.2 GB
EGAF00006130973 vcf.gz 222.7 GB
94 Files (5.3 TB)