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Fastq and reference alignment of 19 samples for defining structural variation associated with breast cancer susceptibility by long-read genome sequencing

Long-read genome sequencing performed on the Oxford Nanopore Technologies' PromethION to resolve variants underlying breast cancer susceptibility in sixteen individuals with pathogenic germline SVs in BRCA1, BRCA2, CHEK2 or PALB2.

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BC Cancer, part of the Provincial Health Services Authority - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005872 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006127188 fastq.gz 68.9 GB
EGAF00006127189 fastq.gz 80.9 GB
EGAF00006127190 fastq.gz 95.9 GB
EGAF00006127191 fastq.gz 86.0 GB
EGAF00006127192 fastq.gz 57.3 GB
EGAF00006127193 fastq.gz 69.1 GB
EGAF00006127194 fastq.gz 50.6 GB
EGAF00006127195 fastq.gz 61.5 GB
EGAF00006127196 fastq.gz 42.3 GB
EGAF00006127197 fastq.gz 56.3 GB
EGAF00006127198 fastq.gz 75.3 GB
EGAF00006127199 fastq.gz 98.0 GB
EGAF00006127200 fastq.gz 117.3 GB
EGAF00006127201 fastq.gz 110.4 GB
EGAF00006127202 fastq.gz 89.5 GB
EGAF00006127203 fastq.gz 76.6 GB
EGAF00006127216 bam 104.7 GB
EGAF00006127217 bam 120.5 GB
EGAF00006127218 bam 143.7 GB
EGAF00006127219 bam 132.0 GB
EGAF00006127220 bam 89.3 GB
EGAF00006127221 bam 106.1 GB
EGAF00006127222 bam 74.5 GB
EGAF00006127223 bam 88.3 GB
EGAF00006127224 bam 64.6 GB
EGAF00006127225 bam 85.6 GB
EGAF00006127226 bam 115.5 GB
EGAF00006127227 bam 141.9 GB
EGAF00006127228 bam 173.6 GB
EGAF00006127229 bam 160.8 GB
EGAF00006127230 bam 133.0 GB
EGAF00006127231 bam 114.4 GB
EGAF00007920319 bam 46.0 GB
EGAF00007920320 bam 57.1 GB
EGAF00007920321 bam 42.9 GB
EGAF00007920322 fastq.gz 41.5 GB
EGAF00007920323 fastq.gz 49.9 GB
EGAF00007920324 fastq.gz 40.2 GB
38 Files (3.4 TB)