About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Fastq and reference alignment of 19 samples for defining structural variation associated with breast cancer susceptibility by long-read genome sequencing

Long-read genome sequencing performed on the Oxford Nanopore Technologies' PromethION to resolve variants underlying breast cancer susceptibility in sixteen individuals with pathogenic germline SVs in BRCA1, BRCA2, CHEK2 or PALB2.

Request Access

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000014
version: 2019-01-07

research use only

This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

BC Cancer, part of the Provincial Health Services Authority - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005872 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00006127188 fastq.gz 68.9 GB Report
EGAF00006127189 fastq.gz 80.9 GB Report
EGAF00006127190 fastq.gz 95.9 GB Report
EGAF00006127191 fastq.gz 86.0 GB Report
EGAF00006127192 fastq.gz 57.3 GB Report
EGAF00006127193 fastq.gz 69.1 GB Report
EGAF00006127194 fastq.gz 50.6 GB Report
EGAF00006127195 fastq.gz 61.5 GB Report
EGAF00006127196 fastq.gz 42.3 GB Report
EGAF00006127197 fastq.gz 56.3 GB Report
EGAF00006127198 fastq.gz 75.3 GB Report
EGAF00006127199 fastq.gz 98.0 GB Report
EGAF00006127200 fastq.gz 117.3 GB Report
EGAF00006127201 fastq.gz 110.4 GB Report
EGAF00006127202 fastq.gz 89.5 GB Report
EGAF00006127203 fastq.gz 76.6 GB Report
EGAF00006127216 bam 104.7 GB Report
EGAF00006127217 bam 120.5 GB Report
EGAF00006127218 bam 143.7 GB Report
EGAF00006127219 bam 132.0 GB Report
EGAF00006127220 bam 89.3 GB Report
EGAF00006127221 bam 106.1 GB Report
EGAF00006127222 bam 74.5 GB Report
EGAF00006127223 bam 88.3 GB Report
EGAF00006127224 bam 64.6 GB Report
EGAF00006127225 bam 85.6 GB Report
EGAF00006127226 bam 115.5 GB Report
EGAF00006127227 bam 141.9 GB Report
EGAF00006127228 bam 173.6 GB Report
EGAF00006127229 bam 160.8 GB Report
EGAF00006127230 bam 133.0 GB Report
EGAF00006127231 bam 114.4 GB Report
EGAF00007920319 bam 46.0 GB Report
EGAF00007920320 bam 57.1 GB Report
EGAF00007920321 bam 42.9 GB Report
EGAF00007920322 fastq.gz 41.5 GB Report
EGAF00007920323 fastq.gz 49.9 GB Report
EGAF00007920324 fastq.gz 40.2 GB Report
38 Files (3.4 TB)